View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20500_high_6 (Length: 254)

Name: NF20500_high_6
Description: NF20500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20500_high_6
NF20500_high_6
[»] chr8 (8 HSPs)
chr8 (7-235)||(1788162-1788390)
chr8 (117-235)||(41509261-41509376)
chr8 (115-235)||(28542904-28543020)
chr8 (130-235)||(41243702-41243805)
chr8 (130-235)||(25120499-25120602)
chr8 (115-170)||(38531694-38531749)
chr8 (130-235)||(24719662-24719765)
chr8 (150-235)||(28835728-28835811)
[»] scaffold0447 (1 HSPs)
scaffold0447 (106-235)||(2218-2347)
[»] scaffold0383 (1 HSPs)
scaffold0383 (106-235)||(5082-5211)
[»] chr7 (11 HSPs)
chr7 (130-235)||(12545948-12546052)
chr7 (115-235)||(11285093-11285211)
chr7 (130-235)||(18305979-18306081)
chr7 (107-235)||(2024444-2024566)
chr7 (158-235)||(44863226-44863302)
chr7 (187-235)||(13875148-13875196)
chr7 (156-235)||(26072299-26072378)
chr7 (156-235)||(26096086-26096165)
chr7 (156-235)||(7290656-7290734)
chr7 (107-213)||(13845009-13845113)
chr7 (150-235)||(368892-368975)
[»] scaffold0044 (1 HSPs)
scaffold0044 (119-235)||(94012-94126)
[»] scaffold0103 (1 HSPs)
scaffold0103 (107-235)||(31527-31653)
[»] scaffold0077 (1 HSPs)
scaffold0077 (115-199)||(24712-24795)
[»] scaffold0292 (1 HSPs)
scaffold0292 (118-235)||(17483-17596)
[»] chr2 (3 HSPs)
chr2 (107-213)||(22692032-22692135)
chr2 (107-213)||(22696679-22696782)
chr2 (165-213)||(4450343-4450391)
[»] chr4 (8 HSPs)
chr4 (116-181)||(15116288-15116353)
chr4 (130-235)||(12838335-12838438)
chr4 (121-235)||(30236547-30236657)
chr4 (165-235)||(21961612-21961680)
chr4 (107-235)||(12901753-12901874)
chr4 (187-235)||(20814083-20814131)
chr4 (130-235)||(8874487-8874589)
chr4 (150-235)||(19998265-19998348)
[»] scaffold0597 (1 HSPs)
scaffold0597 (156-235)||(3257-3337)
[»] scaffold0039 (1 HSPs)
scaffold0039 (120-235)||(21486-21599)
[»] chr5 (1 HSPs)
chr5 (107-234)||(11338925-11339051)
[»] chr1 (6 HSPs)
chr1 (121-235)||(27331239-27331349)
chr1 (125-235)||(2423134-2423241)
chr1 (130-235)||(22408305-22408409)
chr1 (165-231)||(35524521-35524585)
chr1 (130-235)||(22079941-22080043)
chr1 (187-235)||(21716191-21716238)
[»] chr3 (10 HSPs)
chr3 (115-235)||(47786866-47786982)
chr3 (115-235)||(7851427-7851546)
chr3 (156-235)||(30140732-30140810)
chr3 (163-235)||(53900632-53900702)
chr3 (165-235)||(14296490-14296558)
chr3 (165-235)||(14302117-14302185)
chr3 (115-167)||(15874323-15874375)
chr3 (156-235)||(17098671-17098745)
chr3 (150-235)||(22272782-22272865)
chr3 (130-235)||(54042928-54043030)
[»] scaffold0269 (1 HSPs)
scaffold0269 (125-199)||(2836-2909)
[»] scaffold0158 (1 HSPs)
scaffold0158 (130-235)||(16126-16229)
[»] scaffold0120 (1 HSPs)
scaffold0120 (146-235)||(26627-26715)
[»] scaffold0049 (1 HSPs)
scaffold0049 (140-231)||(30408-30496)
[»] chr6 (5 HSPs)
chr6 (165-235)||(16104612-16104680)
chr6 (130-235)||(31626493-31626596)
chr6 (115-174)||(18396992-18397050)
chr6 (130-235)||(4988736-4988838)
chr6 (124-181)||(13623261-13623317)
[»] scaffold0004 (1 HSPs)
scaffold0004 (162-235)||(198146-198219)
[»] scaffold0240 (1 HSPs)
scaffold0240 (130-235)||(5598-5700)
[»] scaffold0037 (2 HSPs)
scaffold0037 (130-235)||(26804-26907)
scaffold0037 (124-235)||(66729-66837)
[»] scaffold0028 (1 HSPs)
scaffold0028 (115-199)||(91155-91239)
[»] scaffold0434 (1 HSPs)
scaffold0434 (164-235)||(2665-2735)
[»] scaffold0316 (1 HSPs)
scaffold0316 (165-213)||(20124-20172)
[»] scaffold0008 (1 HSPs)
scaffold0008 (130-232)||(28208-28307)
[»] scaffold0083 (1 HSPs)
scaffold0083 (130-235)||(12247-12348)
[»] scaffold0021 (1 HSPs)
scaffold0021 (158-235)||(76341-76417)
[»] scaffold0462 (1 HSPs)
scaffold0462 (187-235)||(4185-4233)
[»] scaffold0395 (1 HSPs)
scaffold0395 (156-232)||(13742-13816)
[»] scaffold0022 (1 HSPs)
scaffold0022 (187-235)||(114347-114394)
[»] scaffold0359 (1 HSPs)
scaffold0359 (156-235)||(13908-13986)
[»] scaffold0102 (1 HSPs)
scaffold0102 (156-235)||(37514-37592)
[»] scaffold0051 (1 HSPs)
scaffold0051 (121-235)||(55936-56045)
[»] scaffold0480 (1 HSPs)
scaffold0480 (127-235)||(7425-7528)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 1788162 - 1788390
Alignment:
Q  7 tcgagtgatatgaacgagtcattcagttcaatctgattcagtcatgtggttcgaccaatcatatgtttcataatgcaaattatgttcatagatcaatcat 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1788162 tcgagttatatgaacgagtcattcagttcaatctgattcagtcatgtggttcgaccaatcatatgtttcataatgcaaattatgttcatagatcaatcat 1788261  T
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1788262 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 1788361  T
Q  207 atgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||||||||||||||||    
T  1788362 atgttggaaattttgagatacatctatgt 1788390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 41509261 - 41509376
Alignment:
Q  117 agtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaa 216  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||| | ||||| |||| ||||||| |||| ||||||||||  |    
T  41509261 agtctaggttggctctgatctaggcgtcggttatgtctgtctagattatcttttgttttgta-ttttgttatgtttggaga-ttacccgtatgttgg-ga 41509357  T
Q  217 ttttgagatacatctatgt 235  Q
    ||||||||| |||||||||    
T  41509358 ttttgagatgcatctatgt 41509376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 28543020 - 28542904
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttgga 214  Q
    |||||||||||||| ||||||||||||||||||  |||| ||||||||||| |||| ||| ||| ||||| ||||| || |||||||| | |||||| ||    
T  28543020 agagtctaggttggctctgatctaggcgtcggt--tgtcgatctagattatattttatttcgga-ttttgttatgactgaagatttacccatatgtt-ga 28542925  T
Q  215 aattttgagatacatctatgt 235  Q
     |||||||||| |||||||||    
T  28542924 gattttgagattcatctatgt 28542904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 41243805 - 41243702
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  |||||||||||||||  |||||||||| | |||||||||||| |||| |||||||||||| ||||||||| |||    
T  41243805 tctgatctaggcttcg-ttgtgtcggtctagattatcttttactttggatttt-gttatgattggagacttacccgtatgttggaatttttgagattcat 41243708  T
Q  230 ctatgt 235  Q
    ||||||    
T  41243707 ctatgt 41243702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 25120602 - 25120499
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  |||||||||||||||  |||||||||| | ||||||||||||||| | |||||||||| |||| |||||| |||    
T  25120602 tctgatctaggcttcg-ttgtgtcggtctagattatcttttactttggatttt-gttatgattggagattttcccgtatgttgggaattatgagattcat 25120505  T
Q  230 ctatgt 235  Q
    ||||||    
T  25120504 ctatgt 25120499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 38531749 - 38531694
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatctttt 170  Q
    |||||||||| ||| ||||||||||| ||| ||||||||| |||||||||||||||    
T  38531749 agagtctaggatggctctgatctaggtgtctgttatgtcagtctagattatctttt 38531694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 24719662 - 24719765
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  ||||||||||||||| ||||||| || || |||| ||||||| |||| | |||||||| | ||||||||| |||    
T  24719662 tctgatctaggcttcg-ttgtgtcggtctagattatcttttattttggacttctgttatgtttggaga-ttacccttatgttgggatttttgagatgcat 24719759  T
Q  230 ctatgt 235  Q
    ||||||    
T  24719760 ctatgt 24719765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 28835811 - 28835728
Alignment:
Q  150 tgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||| |||||||||||||||  ||||| |||||| |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||    
T  28835811 tgtcagtctagattatcttttactttgg-tttttgttatgtttggaga-ttacccgtttgttgggatttttgagatgcatctatgt 28835728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 2347 - 2218
Alignment:
Q  106 tgtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatt-tttggtatgattggagatttacac 204  Q
    |||||||  |||||||||||||| ||| |||||||||| |||||||||  ||||||||||| ||||||||||||| |||| ||||||||||||||||| |    
T  2347 tgtgtttttagagtctaggttggctctaatctaggcgttggttatgtctgtctagattatcatttgttttggattatttgttatgattggagatttaccc 2248  T
Q  205 gtatgttggaaattttgagatacatctatgt 235  Q
    ||||||| |  |||||||||| |||||||||    
T  2247 gtatgttag-gattttgagatgcatctatgt 2218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 5211 - 5082
Alignment:
Q  106 tgtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatt-tttggtatgattggagatttacac 204  Q
    |||||||  |||||||||||||| ||| |||||||||| |||||||||  ||||||||||| ||||||||||||| |||| ||||||||||||||||| |    
T  5211 tgtgtttttagagtctaggttggctctaatctaggcgttggttatgtctgtctagattatcatttgttttggattatttgttatgattggagatttaccc 5112  T
Q  205 gtatgttggaaattttgagatacatctatgt 235  Q
    ||||||| |  |||||||||| |||||||||    
T  5111 gtatgttag-gattttgagatgcatctatgt 5082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 12545948 - 12546052
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||| | ||||||||| |||    
T  12545948 tctgatctaggcgtcggttatgtttgtctagattatcttttgttttgga-ttttgttatgattggagacttacccgtatgttgggatttttgagattcat 12546046  T
Q  230 ctatgt 235  Q
    ||||||    
T  12546047 ctatgt 12546052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 11285211 - 11285093
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttgga 214  Q
    ||||||||| |||| ||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||| |||| ||||||||||||  |||||||||     
T  11285211 agagtctagtttggctctgatctaggcgtcggttatatcggtctagattatcttttgttttgga-ttttgttatgtttggagatttacctgtatgttgg- 11285114  T
Q  215 aattttgagatacatctatgt 235  Q
     ||||||| || |||||||||    
T  11285113 gattttgatattcatctatgt 11285093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 18305979 - 18306081
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||  |||||||||| |||    
T  18305979 tctgatctaggcttcg-ttgtgtctgtctagattatcttttgttttgga-ttttgttatgattggagatttacccgtatgttgg-gattttgagattcat 18306075  T
Q  230 ctatgt 235  Q
    ||||||    
T  18306076 ctatgt 18306081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 2024566 - 2024444
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatt-tttggtatgattggagatttacacg 205  Q
    ||||||| |||||||||||||| |||||||||||| || ||  |   | |||||||   ||||||||||| ||| |||| ||||||||||||||||| ||    
T  2024566 gtgtttatagagtctaggttggctctgatctaggcctctgtcgt---agtctagat---cttttgttttgaattatttgttatgattggagatttacccg 2024473  T
Q  206 tatgttggaaattttgagatacatctatgt 235  Q
    ||||||||  |||||||||| |||||||||    
T  2024472 tatgttgg-gattttgagatgcatctatgt 2024444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 44863302 - 44863226
Alignment:
Q  158 tagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||  |||||||||| | |||| |||||||||||| |||||||||| |||||||| || |||||||||    
T  44863302 tagattatcttttactttggatttt-gttatgtttggagatttacccgtatgttgggaattttgaaattcatctatgt 44863226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 13875148 - 13875196
Alignment:
Q  187 atgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||||| |||| |||||||||||| ||||||||| |||||||||    
T  13875148 atgattggagacttacccgtatgttggaatttttgagattcatctatgt 13875196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 26072299 - 26072378
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgtt-ggaaattttgagatacatctatgt 235  Q
    |||||||||||||||  |||||||||| | |||||||||||| |||| |||||||| |||  ||||||||| |||||||||    
T  26072299 tctagattatcttttactttggatttt-gttatgattggagacttacccgtatgttgggattttttgagattcatctatgt 26072378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 26096086 - 26096165
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgtt-ggaaattttgagatacatctatgt 235  Q
    |||||||||||||||  |||||||||| | |||||||||||| |||| |||||||| |||  ||||||||| |||||||||    
T  26096086 tctagattatcttttactttggatttt-gttatgattggagacttacccgtatgttgggattttttgagattcatctatgt 26096165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 7290734 - 7290656
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||| ||||||||||  |||||||||||| |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||    
T  7290734 tctatattatcttttactttggatttttgttatgtttggaga-ttacccgtttgttgggatttttgagatgcatctatgt 7290656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 13845009 - 13845113
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 206  Q
    ||||||| ||||| ||||| || ||| ||||||||||| ||| |||   |||||||| |||||||||||||| ||||| |||| |||||||| ||| |||    
T  13845009 gtgtttatagagtttaggtaggctcttatctaggcgtcagtt-tgttggtctagattgtcttttgttttgga-ttttgttatgtttggagatatacccgt 13845106  T
Q  207 atgttgg 213  Q
     ||||||    
T  13845107 gtgttgg 13845113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 368975 - 368892
Alignment:
Q  150 tgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||| |||||||||||||||  ||||| |||||| |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||    
T  368975 tgtcagtctagattatcttttactttgg-tttttgttatgtttggaga-ttacccgtttgttgggatttttgagatgcatctatgt 368892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 94126 - 94012
Alignment:
Q  119 tctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaatt 218  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||| ||||||  | ||||| ||||||||||||||||| ||||||||||  |||    
T  94126 tctaggttggctctgatctaggcgtcggttatgtcggtctagattatcttctgtttttta-ttttgttatgattggagatttacccgtatgttgg-gatt 94029  T
Q  219 ttgagatacatctatgt 235  Q
    ||||||| |||||||||    
T  94028 ttgagattcatctatgt 94012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 31653 - 31527
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 206  Q
    ||||||| |||||||||||||| ||||||||||| ||||||| ||||  |||| |||||||||||||||||| ||||| ||||||||||||| ||| |||    
T  31653 gtgtttatagagtctaggttggctctgatctaggtgtcggttttgtcggtctatattatcttttgttttgga-ttttgttatgattggagatatacccgt 31555  T
Q  207 atgttggaaattttgagatacatctatgt 235  Q
     ||||||   ||||||||| |||||||||    
T  31554 gtgttgg-ggttttgagattcatctatgt 31527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 24712 - 24795
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatt 199  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||    
T  24712 agagtctaggttggctctgatctaggcgtcggttatgtctgtctagattatcttttgttttgga-ttttgttatgtttggagatt 24795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 17596 - 17483
Alignment:
Q  118 gtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaat 217  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||  ||||| ||||| |||||||||||| |||| ||||||||||  ||    
T  17596 gtctaggttggctctgatctaggcgtcggttatgtctgtctagattagcttttg--ttggacttttgttatgattggaga-ttacccgtatgttgg-gat 17501  T
Q  218 tttgagatacatctatgt 235  Q
    |||||||| |||||||||    
T  17500 tttgagatgcatctatgt 17483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 22692032 - 22692135
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 206  Q
    ||||||| |||||||||| ||| ||||||||||||||||||  ||||  ||||||||||| ||||||||||| ||||| ||||||||||||| ||| |||    
T  22692032 gtgtttatagagtctaggatggctctgatctaggcgtcggt--tgtcggtctagattatcgtttgttttgga-ttttgttatgattggagatatacccgt 22692128  T
Q  207 atgttgg 213  Q
    |||||||    
T  22692129 atgttgg 22692135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 22696679 - 22696782
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 206  Q
    ||||||| |||||||||| ||| ||||||||||||||||||  ||||  ||||||||||| ||||||||||| ||||| ||||||||||||| ||| |||    
T  22696679 gtgtttatagagtctaggatggctctgatctaggcgtcggt--tgtcggtctagattatcgtttgttttgga-ttttgttatgattggagatatacccgt 22696775  T
Q  207 atgttgg 213  Q
    |||||||    
T  22696776 atgttgg 22696782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 4450343 - 4450391
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttgg 213  Q
    |||||||||||||||| ||| | ||||||||||||||| | ||||||||    
T  4450343 tcttttgttttggattattgttgtgattggagatttacccttatgttgg 4450391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 15116288 - 15116353
Alignment:
Q  116 gagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggattt 181  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  15116288 gagtctaggttggctctgatctaggcgtctgttatgtcagtctagattatcttctgttttggattt 15116353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 12838335 - 12838438
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  |||||||||||||||  |||||||||| | |||||||||||| |||| |||||||||| | ||||||||| |||    
T  12838335 tctgatctaggcttcg-ttgtgtcggtctagattatcttttactttggatttt-gttatgattggagacttacccgtatgttgggatttttgagattcat 12838432  T
Q  230 ctatgt 235  Q
    ||||||    
T  12838433 ctatgt 12838438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 30236547 - 30236657
Alignment:
Q  121 taggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaatttt 220  Q
    |||||||| ||||||||| || ||| || ||||  ||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||  ||||     
T  30236547 taggttggctctgatctaagcatcg-ttgtgtcggtctagattatcttttgttttgga-ttttgttatgattggaga-ttacccgtatgttgg-gatttc 30236642  T
Q  221 gagatacatctatgt 235  Q
     ||||||||||||||    
T  30236643 aagatacatctatgt 30236657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 21961612 - 21961680
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||| |||| |  |||||||| |||||||||    
T  21961612 tcttttgttttggattattgttatgattggagatttacccgtattttggga--tttgagattcatctatgt 21961680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 12901753 - 12901874
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgt 206  Q
    ||||||| ||||| ||| |||| ||||||||||||||||||  ||||  ||||||||| ||||||  ||||| ||||| |||| ||| |||||||| |||    
T  12901753 gtgtttatagagtttag-ttggctctgatctaggcgtcggt--tgtcggtctagattagcttttg--ttgga-ttttgttatgtttgaagatttacccgt 12901846  T
Q  207 atgttggaaattttgagatacatctatgt 235  Q
     ||||||  ||||||||||||||||||||    
T  12901847 gtgttgg-gattttgagatacatctatgt 12901874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 20814083 - 20814131
Alignment:
Q  187 atgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||| ||| |||||||||| ||||||||||| |||||||||    
T  20814083 atgattggagatgtacccgtatgttgggaattttgagattcatctatgt 20814131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 8874487 - 8874589
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||| ||||||||||||||||  ||||| ||||| |||| ||||||| |||| | ||||||||   ||||||||| |||    
T  8874487 tctgatctaggcttcg-ttgtgtcagtctagattatcttttg-cttggagttttgttatgcttggaga-ttacccttatgttggggtttttgagattcat 8874583  T
Q  230 ctatgt 235  Q
    ||||||    
T  8874584 ctatgt 8874589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 19998348 - 19998265
Alignment:
Q  150 tgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||| |||||||||||||||  ||||| |||||| |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||    
T  19998348 tgtcagtctagattatcttttactttgg-tttttgttatgtttggaga-ttacccgtctgttgggatttttgagatgcatctatgt 19998265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0597 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 3257 - 3337
Alignment:
Q  156 tctagattatcttttgttttggatt-tttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||| | ||||||||| |||||||||    
T  3257 tctagattatcttttgttttggattatttgttatgattggagatttacccgtttgttgggatttttgagatgcatctatgt 3337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 21486 - 21599
Alignment:
Q  120 ctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattt 219  Q
    ||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||||  |||| |||| ||||||| |||| | | |||||| | |||    
T  21486 ctaggttgactctgatctaggcgtcggttatgtctgtctagattatcttttgttttgga-gtttgctatgtttggaga-ttacccatttgttgggatttt 21583  T
Q  220 tgagatacatctatgt 235  Q
    |||||| |||||||||    
T  21584 tgagatgcatctatgt 21599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 11338925 - 11339051
Alignment:
Q  107 gtgtttagagagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatt--tttggtatgattggagatttacac 204  Q
    ||||||| |||||||||||||| ||||||||||||||||||  ||||  | |||||||||||||||||||||||  ||   ||||||||||||||||| |    
T  11338925 gtgtttatagagtctaggttggctctgatctaggcgtcggt--tgtcggtttagattatcttttgttttggattaattgtttatgattggagatttactc 11339022  T
Q  205 gtatgttggaaattttgagatacatctatg 234  Q
    || |||| ||  ||||||||| ||||||||    
T  11339023 gtgtgtt-gaggttttgagattcatctatg 11339051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 27331239 - 27331349
Alignment:
Q  121 taggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaatttt 220  Q
    |||||||| ||||||||||||||| ||| ||||  ||||||||||| |||||||| || ||||| |||||||||||| |||| ||||||||||  |||||    
T  27331239 taggttggctctgatctaggcgtc-gttgtgtcggtctagattatcatttgttttaga-ttttgttatgattggaga-ttacccgtatgttgg-gatttt 27331334  T
Q  221 gagatacatctatgt 235  Q
    |||||||||||||||    
T  27331335 gagatacatctatgt 27331349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 2423134 - 2423241
Alignment:
Q  125 ttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgaga 224  Q
    |||| |||||||||||||||| || ||||  ||||||||| ||||||||  ||| ||||| |||  |||||||||||| |||||||||| | ||||||||    
T  2423134 ttggctctgatctaggcgtcg-ttgtgtcggtctagattagcttttgtt--ggacttttgttatttttggagatttacccgtatgttgggatttttgaga 2423230  T
Q  225 tacatctatgt 235  Q
    | |||||||||    
T  2423231 ttcatctatgt 2423241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 22408305 - 22408409
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggt-atgattggagatttacacgtatgttggaaattttgagataca 228  Q
    |||||||||||| ||| || ||||  ||||||| ||||||||||||||||| ||| | ||||| ||||||||||  ||||||||| ||||||||||| ||    
T  22408305 tctgatctaggcttcg-ttgtgtcggtctagat-atcttttgttttggattattgttcatgatgggagatttacctgtatgttgggaattttgagattca 22408402  T
Q  229 tctatgt 235  Q
    |||||||    
T  22408403 tctatgt 22408409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 35524521 - 35524585
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatct 231  Q
    |||||||||||||||| ||| ||||| ||||||||||| |||||||| |||  |||||||| |||||    
T  35524521 tcttttgttttggattattgttatgagtggagatttactcgtatgttcgaa--tttgagattcatct 35524585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 22080043 - 22079941
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  ||||||||||||||| ||||||| ||||| |||| |||||||||||| ||| ||| || | |||||||||  ||    
T  22080043 tctgatctaggcttcg-ttgtgtcggtctagattatcttttattttgga-ttttgttatg-ttggagatttacccgtttgtagggatttttgagatgaat 22079947  T
Q  230 ctatgt 235  Q
    ||||||    
T  22079946 ctatgt 22079941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 21716238 - 21716191
Alignment:
Q  187 atgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||| |||||||||| || |||||||| |||||||||    
T  21716238 atgattggagatttacccgtatgttgggaa-tttgagattcatctatgt 21716191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 47786866 - 47786982
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttgga 214  Q
    |||||||||| ||| | |||||||||||||  |||||||  ||||||||||||||| ||||||||| ||  ||||||||||||||||  ||||||||||     
T  47786866 agagtctaggatggctatgatctaggcgtct-ttatgtcggtctagattatcttttattttggattgtt--tatgattggagatttattcgtatgttgg- 47786961  T
Q  215 aattttgagatacatctatgt 235  Q
     |||||||||| |||||||||    
T  47786962 gattttgagattcatctatgt 47786982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 7851546 - 7851427
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttgg--tatgattggagatttacacgtatgttg 212  Q
    |||||||||||||| ||||||||||||||||||  ||||  |||||||||||||||  |||||||| || |  |||||||||||| ||||  ||||||||    
T  7851546 agagtctaggttggctctgatctaggcgtcggt--tgtcggtctagattatctttt-atttggattatttgtttatgattggagacttacctgtatgttg 7851450  T
Q  213 gaaattttgagatacatctatgt 235  Q
    | | ||||||||| |||||||||    
T  7851449 ggatttttgagattcatctatgt 7851427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 30140810 - 30140732
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||||||||| ||||||||||||| |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||    
T  30140810 tctagattatcttttattttggatttttgttatgtttggaga-ttacccgtttgttgggatttttgagatgcatctatgt 30140732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 53900632 - 53900702
Alignment:
Q  163 tatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||| ||||||||| ||| ||||||||||||||||| |||||||||| |  |||||||| |||||||||    
T  53900632 tatcttttattttggattattgttatgattggagatttacccgtatgttggga--tttgagattcatctatgt 53900702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 14296558 - 14296490
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||| ||| |||||| |||||||||| |||||||||| |  |||||||| |||||||||    
T  14296558 tcttttgttttggattattgttatgatcggagatttacccgtatgttggga--tttgagattcatctatgt 14296490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 14302185 - 14302117
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||| ||| |||||| |||||||||| |||||||||| |  |||||||| |||||||||    
T  14302185 tcttttgttttggattattgttatgatcggagatttacccgtatgttggga--tttgagattcatctatgt 14302117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 15874375 - 15874323
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatct 167  Q
    |||||||||| ||| |||||||||||||||||||||||   ||||||||||||    
T  15874375 agagtctaggatggctctgatctaggcgtcggttatgttggtctagattatct 15874323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 17098745 - 17098671
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||| ||||||||  ||||||||| |||| ||||||||| || |||||||||| |  ||||||||||||||||||    
T  17098745 tctagattagcttttgtt--ggatttttgttatgtttggagatt-acccgtatgttggga--tttgagatacatctatgt 17098671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 22272865 - 22272782
Alignment:
Q  150 tgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||| |||||||||||||||  ||||| |||||| |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||    
T  22272865 tgtcagtctagattatcttttactttgg-tttttgttatgtttggaga-ttacccgtttgttgggatttttgagatgcatctatgt 22272782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 54042928 - 54043030
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  ||||||||||||| | ||||||| ||||| |||||||||||| |||| ||| |||||| | ||||||||| |||    
T  54042928 tctgatctaggcttcg-ttgtgtcggtctagattatcttatattttgga-ttttgttatgattggaga-ttacccgtttgttgggatttttgagatgcat 54043024  T
Q  230 ctatgt 235  Q
    | ||||    
T  54043025 cgatgt 54043030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 2909 - 2836
Alignment:
Q  125 ttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatt 199  Q
    |||| |||||||||||||||||||||||   ||||||||||||||||||||||| ||||| |||| |||||||||    
T  2909 ttggctctgatctaggcgtcggttatgtttgtctagattatcttttgttttgga-ttttgttatgtttggagatt 2836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 16229 - 16126
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  ||||||||||||||| ||||||| || || |||| ||||||| |||||| |||||||||| ||||||||| |||    
T  16229 tctgatctaggcttcg-ttgtgtcggtctagattatcttttattttggacttctgttatgtttggaga-ttacacttatgttggaatttttgagatgcat 16132  T
Q  230 ctatgt 235  Q
    ||||||    
T  16131 ctatgt 16126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 26715 - 26627
Alignment:
Q  146 gttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||  |||||||||||||||  |||||||||| | |||||||||||| |||| |||||||||| | ||||||||| |||||||||    
T  26715 gttatgtcggtctagattatcttttactttggatttt-gttatgattggagacttacccgtatgttgggatttttgagattcatctatgt 26627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 30496 - 30408
Alignment:
Q  140 gcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatct 231  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||| |||| ||||||| |||| ||||||||||  |||||||||| |||||    
T  30496 gcgtcggttatgtctgtctagattatcttttgttttgga-ttttgttatgtttggaga-ttacccgtatgttgg-gattttgagatgcatct 30408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 16104680 - 16104612
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||| |  |||||||| |||||||||    
T  16104680 tcttttgttttggattattgatatgattggagatttacccgtatgttggga--tttgagattcatctatgt 16104612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 31626596 - 31626493
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  |||||||||||||||  ||| |||||| | |||||||||||| |||| |||||||||| | ||||||||| |||    
T  31626596 tctgatctaggcttcg-ttgtgtcggtctagattatcttttacttttgatttt-gttatgattggagacttacccgtatgttgggatttttgagattcat 31626499  T
Q  230 ctatgt 235  Q
    ||||||    
T  31626498 ctatgt 31626493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 18397050 - 18396992
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttt 174  Q
    ||||| |||||||| ||||||||||||||||||| ||||  |||||||| ||||||||||    
T  18397050 agagtttaggttggctctgatctaggcgtcggtt-tgtcggtctagattgtcttttgttt 18396992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 4988838 - 4988736
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  ||||||||||||| | ||||||| ||||| |||||||||||| |||| ||| |||||| | ||||||||| |||    
T  4988838 tctgatctaggcttcg-ttgtgtcggtctagattatcttatattttgga-ttttgttatgattggaga-ttacccgtttgttgggatttttgagatgcat 4988742  T
Q  230 ctatgt 235  Q
    | ||||    
T  4988741 cgatgt 4988736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 13623261 - 13623317
Alignment:
Q  124 gttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggattt 181  Q
    ||||| |||||||||||| ||| || ||||| ||||||||||||||| ||||||||||    
T  13623261 gttggctctgatctaggcttcg-ttgtgtcagtctagattatcttttattttggattt 13623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 198146 - 198219
Alignment:
Q  162 ttatcttttgttttggatt-tttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||||||||||||| |||| |||||| |||||||||| ||||||||||  |||||||||| |||||||||    
T  198146 ttatcttttgttttggattatttgttatgatcggagatttacccgtatgttgg-gattttgagattcatctatgt 198219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 5700 - 5598
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  |||||||||||||||  |||||| ||||| |||||||||||| |||| |||||||||| | ||||||||| |||    
T  5700 tctgatctaggcttcg-ttgtgtcggtctagattatcttttactttgga-ttttgttatgattggaga-ttacccgtatgttgggatttttgagattcat 5604  T
Q  230 ctatgt 235  Q
    ||||||    
T  5603 ctatgt 5598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 26804 - 26907
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||  |||||||||||||||  ||||||| || | |||||||||||| |||| |||||||||| | ||||||||| |||    
T  26804 tctgatctaggcttcg-ttgtgtcggtctagattatcttttactttggatctt-gttatgattggagacttacccgtatgttgggatttttgagattcat 26901  T
Q  230 ctatgt 235  Q
    ||||||    
T  26902 ctatgt 26907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 66729 - 66837
Alignment:
Q  124 gttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgag 223  Q
    ||||| ||||||||||| |||| ||  |||  |||||||||||||||||||| |  ||||| ||||||||||||||| | ||||| ||||  ||| | ||    
T  66729 gttggctctgatctaggggtcgatt--gtcggtctagattatcttttgtttttggattttgttatgattggagatttgcccgtattttgg-gattctaag 66825  T
Q  224 atacatctatgt 235  Q
    ||||||||||||    
T  66826 atacatctatgt 66837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 91155 - 91239
Alignment:
Q  115 agagtctaggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggt-atgattggagatt 199  Q
    |||||||||||||| | |||||||||||||  |||||||  ||||||||||||||| ||||||||| ||| | |||||||||||||    
T  91155 agagtctaggttggctatgatctaggcgtc-tttatgtcgctctagattatcttttattttggattattgttcatgattggagatt 91239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 2735 - 2665
Alignment:
Q  164 atcttttgttttggatt-tttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| |||||||||    
T  2735 atcttttgttttggattatttgttatgattggagatt-acccgtatgttggaa-ttttgagattcatctatgt 2665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 20172 - 20124
Alignment:
Q  165 tcttttgttttggatttttggtatgattggagatttacacgtatgttgg 213  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  20172 tcttttgttttggattattgatatgattggagatttacccgtatgttgg 20124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 28307 - 28208
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||| ||||| || ||||  |||||||||||||||  |||||| ||||| |||| |||||||||| | ||||||||||  ||||||||||||||    
T  28307 tctgatctagacgtcg-ttgtgtcgctctagattatcttttactttgga-ttttgttatgtttggagatttgcccgtatgttgg-gattttgagatacat 28211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 12348 - 12247
Alignment:
Q  130 tctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacat 229  Q
    |||||||||||| ||| || ||||| ||||||||||||||||  ||||| ||||| |||| ||||||| |||| ||||||||||  |||||||||| |||    
T  12348 tctgatctaggcttcg-ttgtgtcagtctagattatcttttg-cttggacttttgttatgtttggaga-ttacccgtatgttgg-gattttgagatgcat 12253  T
Q  230 ctatgt 235  Q
    ||||||    
T  12252 ctatgt 12247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 76417 - 76341
Alignment:
Q  158 tagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||  ||||||| || | |||||||||||| |||| |||||||||| | ||||||||| |||||||||    
T  76417 tagattatcttttactttggatctt-gttatgattggagacttacccgtatgttgggatttttgagattcatctatgt 76341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 4233 - 4185
Alignment:
Q  187 atgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||||||||    
T  4233 atgattggagttttacccgtatgttgggaattttgagattcatctatgt 4185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 13816 - 13742
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatcta 232  Q
    |||||||||||||||  |||||| ||||| |||||||||||| |||| |||||||||| | ||||||||| ||||||    
T  13816 tctagattatcttttactttgga-ttttgttatgattggagacttac-cgtatgttgggatttttgagattcatcta 13742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 114347 - 114394
Alignment:
Q  187 atgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  114347 atgattggagatttacccgtatgttggaaa-tttgagattcatctatgt 114394  T

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Target: scaffold0359 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 13908 - 13986
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    |||||||||||||||  ||||||| || | |||||||||||| |||| | |||||||| | ||||||||| |||||||||    
T  13908 tctagattatcttttactttggatatt-gctatgattggagacttacccatatgttgggatttttgagattcatctatgt 13986  T

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Target: scaffold0102 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 37592 - 37514
Alignment:
Q  156 tctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagatacatctatgt 235  Q
    ||||||||||| |||  ||||||||||   |||||||||||| |||| |||||||||| | ||||||||| |||||||||    
T  37592 tctagattatcctttactttggattttat-tatgattggagacttacccgtatgttgggatttttgagattcatctatgt 37514  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 56045 - 55936
Alignment:
Q  121 taggttggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaatttt 220  Q
    |||||||| ||||||||||||||| ||| ||||  ||||||||| |  |||| ||||| ||||| |||||||||||| |||| ||||||| ||  |||||    
T  56045 taggttggctctgatctaggcgtc-gttgtgtcggtctagattagc--ttgtgttggaattttgttatgattggaga-ttacccgtatgtagg-gatttt 55951  T
Q  221 gagatacatctatgt 235  Q
    ||||| |||||||||    
T  55950 gagattcatctatgt 55936  T

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Target: scaffold0480 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 7425 - 7528
Alignment:
Q  127 ggttctgatctaggcgtcggttatgtcaatctagattatcttttgttttggatttttggtatgattggagatttacacgtatgttggaaattttgagata 226  Q
    ||||||||||||||| ||| || ||||| ||||||||||||||||  |||||  |||| |||| ||||||| |||| ||||||||||  ||||||||||     
T  7425 ggttctgatctaggcttcg-ttgtgtcagtctagattatcttttg-cttgga-ctttgttatgtttggaga-ttacccgtatgttgg-gattttgagatg 7519  T
Q  227 catctatgt 235  Q
    |||||||||    
T  7520 catctatgt 7528  T

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