View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20500_low_1 (Length: 837)
Name: NF20500_low_1
Description: NF20500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20500_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 553 - 830
Target Start/End: Original strand, 5439141 - 5439416
Alignment:
| Q |
553 |
taatattattatatgtctcacacaaccgataatatcaacattgttagatttgatatatgtaaggatagtnnnnnnntttgtagttacatacacgggatat |
652 |
Q |
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| T |
5439141 |
taatattattatatgtctcacacaacc-ataatatcaacattgttagatttgatatatgtaaggatagtaaaaaactt-gtagttacatacacgggatat |
5439238 |
T |
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| Q |
653 |
gtatcctaacatatattcatactccttacataatggatgtatgaatgtacatttaacgatagtatatatgaaattcgtacttattaataaattaactata |
752 |
Q |
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| T |
5439239 |
gtatcctaacatatattcgtgctccttatgtaatggatgtatgaatatagatttaacgatagtatatatgaaattcgtatttattaataaattaactata |
5439338 |
T |
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| Q |
753 |
ttacttaaatatctttaactaaatatacaagtttcattttaaattgaaaacctagatattgtttatgctattcttctc |
830 |
Q |
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| T |
5439339 |
ttgcttaaatatctttaactaaatatacaagtttcattttaaattgaaaacctagatattgtttatgctattcttctc |
5439416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 85 - 280
Target Start/End: Original strand, 5438676 - 5438868
Alignment:
| Q |
85 |
tttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttccttaggtagcg |
184 |
Q |
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| T |
5438676 |
tttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaaagaacttgtagtgcttaataaagggttccttaggtagcg |
5438775 |
T |
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| Q |
185 |
gcggcggaggaggaggagccgtttgtgcccccatcgacgacggcgaagagaattcgttcgatttctgcccttgaaattgcttcagttgcgctgtta |
280 |
Q |
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| T |
5438776 |
gcggc---ggaggaggagccgtttgtgcccccatcgacgactgcgaagagaactcgttcgatttctgcccttgaaattgcttcagttgcgctgtta |
5438868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 353 - 469
Target Start/End: Original strand, 5438940 - 5439056
Alignment:
| Q |
353 |
tacatattttgggtttgtgattataaagctttggagaagaaccgtgatcagcaccaccttcactcattcttttattcacttttaccctaactctgatcac |
452 |
Q |
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| T |
5438940 |
tacatattttgggtttgtgattataaagctttggagaagaaccgtgatcagcaccaccttcactcattcttttattcacttttaccctaactcagatcac |
5439039 |
T |
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| Q |
453 |
actctacttgtcttgca |
469 |
Q |
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| T |
5439040 |
actctacttgtcttgca |
5439056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 85 - 280
Target Start/End: Original strand, 5432177 - 5432384
Alignment:
| Q |
85 |
tttttagcttttggggatttagaaaaattacctccaacacca---------gccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttcct |
175 |
Q |
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| T |
5432177 |
tttttagctttttgggttgtagaaaaattacctccaataccaaaattgacagccaatagcataggccaaacgaacttgtagcgcttaatgaagggttcct |
5432276 |
T |
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| Q |
176 |
taggtagcggcggcggaggaggaggagccgtttgtgcccccatcgacgacggcgaagagaattcgttcgatttc---tgcccttgaaattgcttcagttg |
272 |
Q |
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| T |
5432277 |
taggcagcggcggaggtggaggaggagccgtttgagtccccattgacggcggcgaagagaattcgttcgatttctgttggcctcgaaattgcttcagctg |
5432376 |
T |
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| Q |
273 |
cgctgtta |
280 |
Q |
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| T |
5432377 |
cgctgtta |
5432384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 5432463 - 5432558
Alignment:
| Q |
353 |
tacatattttgggtttgtgattataaagctttggagaagaaccgtgatcagcac------caccttcactcattcttttattcacttttaccctaa |
442 |
Q |
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| T |
5432463 |
tacattttttgggtttgtgattatatagttttggagaagaagcatgatcagcactaccaccaccttcactcattcttttcttcacttttaccctaa |
5432558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 5438602 - 5438640
Alignment:
| Q |
11 |
tcaaataaatcaaaccccatttcacaaactcaccaatca |
49 |
Q |
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| T |
5438602 |
tcaaagaaatcaaaccccatttcacaaactcaccaatca |
5438640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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