View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20500_low_2 (Length: 407)
Name: NF20500_low_2
Description: NF20500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20500_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 393
Target Start/End: Original strand, 41028489 - 41028868
Alignment:
| Q |
9 |
agcaaaggacctaacactcttatcctcatcttctgaacacatactcccaaaaacgaagatata--cacttgttaaatagaggctatagcgcaacagaata |
106 |
Q |
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| T |
41028489 |
agcaaaggacctaatactcttatcctcatcttctgaacacatactcccaaaaacgaagatatatacacttgttaaatagaggctatagcgcaacagaata |
41028588 |
T |
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| Q |
107 |
acggaatttgaacaaactactactgtcccccaatacgctattaactnnnnnnnnnnnnnntattgtggaatagcgactatactgaatttgaacaatatat |
206 |
Q |
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| T |
41028589 |
acggaatttgaacaaactgctactgtcccccaatacactattaactaaaaaaa-------tattgtggaatagcgactatactgaatttgaacaatccat |
41028681 |
T |
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| Q |
207 |
tatttttctacaatccacaattgacaacattgtatatacataatgttacttatgcatctattacaatgtttcactatcacactaagcaattattcaaaac |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41028682 |
tatttttctacaatccgcaattgacaacattgtatatacataatgtcacttatgcatctattacaatgtttcactatcacactaagcaattattcaaaac |
41028781 |
T |
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| Q |
307 |
aaccagcaacacatacactgcaattaattctgattctacacaatcaatagttcataaaaattgaaatcaattgaattaagaagaaat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41028782 |
aaccagcaacacatacactgcaattaattctgattctacacaatgaatagttcataaaaattgaaatcaattgaattaagaagaaat |
41028868 |
T |
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