View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20500_low_4 (Length: 323)

Name: NF20500_low_4
Description: NF20500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20500_low_4
NF20500_low_4
[»] chr7 (2 HSPs)
chr7 (1-323)||(38176861-38177183)
chr7 (61-185)||(42414496-42414620)
[»] chr2 (4 HSPs)
chr2 (59-322)||(28626979-28627242)
chr2 (18-176)||(34211959-34212117)
chr2 (61-176)||(18977953-18978068)
chr2 (136-227)||(35582057-35582148)
[»] chr8 (1 HSPs)
chr8 (18-176)||(8619084-8619242)
[»] chr3 (3 HSPs)
chr3 (246-323)||(1526683-1526760)
chr3 (71-177)||(8689686-8689792)
chr3 (71-177)||(9041555-9041661)
[»] chr5 (2 HSPs)
chr5 (61-176)||(22498411-22498526)
chr5 (70-177)||(12169085-12169192)
[»] scaffold0094 (1 HSPs)
scaffold0094 (29-176)||(14431-14578)
[»] chr1 (1 HSPs)
chr1 (29-122)||(19024112-19024205)
[»] chr6 (1 HSPs)
chr6 (73-199)||(31973257-31973385)
[»] chr4 (1 HSPs)
chr4 (136-217)||(49110185-49110266)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 38177183 - 38176861
Alignment:
Q  1 ccgggagaatggactcgaatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  38177183 ccgggagaatggactcgaatgtggagtttgaagataccacaaagagtaaaagtctttctctggagagcgttgagaggtgttcttcctacgcgtatgcgac 38177084  T
Q  101 tgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatgcgatgaggcgaagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177083 tgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatgcgatgaggcgaagac 38176984  T
Q  201 agtttggcgaacagctggcttatgggacgtcatttctgcaactgttgctgttgccgagagctttgcagcttgtattttctctttactgtgcaggctgaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38176983 agtttggcgaacagctggcttatgggacgtcatttctgcaactgttgctgttgccgagagctttgcagcttgtattttctctttactgtgcaggctgata 38176884  T
Q  301 gttgaagaatgcaaggacttggc 323  Q
    |||||||||||||||||||||||    
T  38176883 gttgaagaatgcaaggacttggc 38176861  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 42414496 - 42414620
Alignment:
Q  61 tggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgaga 160  Q
    ||||| ||| ||||||| || || || |||||||||||||| ||||| |||||||| || || || ||| | || |||||||| |||||||||||||| |    
T  42414496 tggagggcactgagaggagtactccccacgcgtatgcgacttcaagataaaggtgttccgtgcacggatagctgccctttttgcgaaacaaattatgaaa 42414595  T
Q  161 atgactggcatgtttttcttggatg 185  Q
    |||| ||| || ||||  |||||||    
T  42414596 atgattggtatattttcattggatg 42414620  T

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Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 59 - 322
Target Start/End: Complemental strand, 28627242 - 28626979
Alignment:
Q  59 tctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatga 158  Q
    |||||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  28627242 tctggagagtgttgagaggtgttcttcctacgcgtatgcgactgccggacaaaggtgtgccatgtacatattgctctcctttttgtgaaacaaattatga 28627143  T
Q  159 gaatgactggcatgtttttcttggatgcgatgaggcgaagacagtttggcgaacagctggcttatgggacgtcatttctgcaactgttgctgttgccgag 258  Q
    ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||  |||||||||||| |||||| | ||||||| |||||| |||    
T  28627142 gaacgactggcatgtttttattggatgcgacgaggcgaagacagtttggcgaacaactaccttatgggacgtgatttctactactgttgatgttgctgag 28627043  T
Q  259 agctttgcagcttgtattttctctttactgtgcaggctgacagttgaagaatgcaaggacttgg 322  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||    
T  28627042 agctttgcaacttgtattttctctttactgtgcaggttgatagttgaagagtgcaagcacttgg 28626979  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 34211959 - 34212117
Alignment:
Q  18 aatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtg 117  Q
    |||||||||||| ||||| || |||||  ||||||| ||  | ||||||||  |||| |||| | | ||||||||||||||  ||||||| |||| |||     
T  34211959 aatgtggagtttaaagattcctcaaaggataaaagttttcctttggagagctgtgaggggtgctttgcctacgcgtatgcggttgcaagataaagttgtt 34212058  T
Q  118 ccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttt 176  Q
    || ||||| ||||| ||||||||||||||||||||||| |||||  | |||||||||||    
T  34212059 ccgtgtacggattgctgtcctttttgtgaaacaaattacgagaacaattggcatgtttt 34212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 18978068 - 18977953
Alignment:
Q  61 tggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgaga 160  Q
    ||||||||  |||| |||||| ||| || |||||||||  ||| ||| |||||||| |||||||| ||||| ||||||||||||||||||||||| || |    
T  18978068 tggagagctgtgaggggtgtttttcttatgcgtatgcggttgccagataaaggtgttccatgtacggattgctgtcctttttgtgaaacaaattacgaaa 18977969  T
Q  161 atgactggcatgtttt 176  Q
    | || |||||||||||    
T  18977968 acgattggcatgtttt 18977953  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 35582148 - 35582057
Alignment:
Q  136 cctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatgcgatgaggcgaagacagtttggcgaacagctggcttatggga 227  Q
    |||||||| ||||||||||||||||||||||  ||| ||||  |||| ||||| |||||||| |  ||||||| |||| |||| || |||||    
T  35582148 cctttttgcgaaacaaattatgagaatgactaacatattttcattgggtgcgaagaggcgaaaaatgtttggctaacaactggattgtggga 35582057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 8619242 - 8619084
Alignment:
Q  18 aatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtg 117  Q
    |||||||||||||||||| || ||||| |||||||| ||  | ||||||||  | || |||||| ||||||||||||||||  ||||||| ||||||||     
T  8619242 aatgtggagtttgaagattccgcaaagggtaaaagttttcctttggagagctgtaaggggtgtttttcctacgcgtatgcggatgcaagataaaggtgtt 8619143  T
Q  118 ccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttt 176  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  8619142 ccatgtacggattgttgtcctttttgtgaaacaaattacgagaacgattggcatgtttt 8619084  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 1526683 - 1526760
Alignment:
Q  246 tgctgttgccgagagctttgcagcttgtattttctctttactgtgcaggctgacagttgaagaatgcaaggacttggc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1526683 tgctgttgccgagagctttgcagcttgtattttctctttactgtgcaggctgacagttgaagaatgcaaggacttggc 1526760  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 8689686 - 8689792
Alignment:
Q  71 tgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggca 170  Q
    ||||||||||||| |  || |||||| |||| ||||| ||||||||||  ||| |  || |||| || ||||||| |||||||||||||||||| | |||    
T  8689686 tgagaggtgttctccaaactcgtatgagactacaagataaaggtgtgcagtgttcgaatagttggccattttgtgcaacaaattatgagaatgattagca 8689785  T
Q  171 tgttttt 177  Q
    |||||||    
T  8689786 tgttttt 8689792  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 9041555 - 9041661
Alignment:
Q  71 tgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggca 170  Q
    ||||||||||||| |  || |||||| |||| ||||| ||||||||||  ||| |  || |||| || ||||||| |||||||||||||||||| | |||    
T  9041555 tgagaggtgttctccaaactcgtatgagactacaagataaaggtgtgcagtgttcgaatagttggccattttgtgcaacaaattatgagaatgattagca 9041654  T
Q  171 tgttttt 177  Q
    |||||||    
T  9041655 tgttttt 9041661  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 22498526 - 22498411
Alignment:
Q  61 tggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgaga 160  Q
    ||||||||  |||| |||||| | ||||||||||||||  ||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||    
T  22498526 tggagagctgtgaggggtgttttgcctacgcgtatgcggttgcaagataaaggtgttccgtgtacggattgctgtcctttttgtgaaacaaattacgaga 22498427  T
Q  161 atgactggcatgtttt 176  Q
    | || |||||||||||    
T  22498426 acgattggcatgtttt 22498411  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 12169085 - 12169192
Alignment:
Q  70 ttgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggc 169  Q
    |||||||||||||| || || |||||| |||| ||||||||||| |||| |||||| ||| | ||||| ||||||||||| |||||||||||||| || |    
T  12169085 ttgagaggtgttctcccaactcgtatgagactacaagacaaaggcgtgcaatgtacggatagctgtccattttgtgaaactaattatgagaatgattgac 12169184  T
Q  170 atgttttt 177  Q
    | ||||||    
T  12169185 acgttttt 12169192  T

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Target: scaffold0094 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 14431 - 14578
Alignment:
Q  29 tgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacaga 128  Q
    ||||||| || |||||| | ||||| ||| | ||||| ||| ||||||| || || || |||||||||||||| ||||| |||||||| || || || ||    
T  14431 tgaagattccgcaaagaattaaagtatttttatggagggcactgagaggagtactccccacgcgtatgcgacttcaagataaaggtgttccgtgcacgga 14530  T
Q  129 ttgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttt 176  Q
    | | |  |||||||| |||||||||||||| ||||| |||||| ||||    
T  14531 tagctaccctttttgcgaaacaaattatgaaaatgattggcatatttt 14578  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 19024205 - 19024112
Alignment:
Q  29 tgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatg 122  Q
    ||||| |||| ||||| |||||||  ||| | ||||| ||||| ||||||||||||||||| || ||| |||| |||||||||||||| |||||    
T  19024205 tgaagttaccgcaaagggtaaaagcgtttttatggagggcattaagaggtgttcttcctacccggatgagacttcaagacaaaggtgttccatg 19024112  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 31973385 - 31973257
Alignment:
Q  73 agaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtaca--gattgttgtcctttttgtgaaacaaattatgagaatgactggca 170  Q
    ||||||||||||||||| || ||   ||| ||||| ||| |||||||||||||   ||| ||||||||  |||||| ||||||||||| ||||| |||||    
T  31973385 agaggtgttcttcctacacgaataaaactacaagaaaaatgtgtgccatgtacgaggatagttgtcctcattgtgagacaaattatgaaaatgattggca 31973286  T
Q  171 tgtttttcttggatgcgatgaggcgaaga 199  Q
    |||  || | |||||| | ||||||||||    
T  31973285 tgtcgttataggatgcaaggaggcgaaga 31973257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 49110185 - 49110266
Alignment:
Q  136 cctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatgcgatgaggcgaagacagtttggcgaacagctg 217  Q
    ||||||||| ||||||| ||||||||||| || ||||| ||  |||| ||||| |||||||| |  ||||||||||| ||||    
T  49110185 cctttttgtcaaacaaactatgagaatgattgacatgtgttcattggctgcgaagaggcgaaaaatgtttggcgaacggctg 49110266  T

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