View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_high_13 (Length: 303)
Name: NF20501_high_13
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_high_13 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 42445870 - 42446160
Alignment:
| Q |
1 |
tggtatattgaaaccggatattataggaccaggcgtgaacatcctagcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaac |
100 |
Q |
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| T |
42445870 |
tggtatattgaaaccggatattataggaccaggcgtgaacatcctggcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaac |
42445969 |
T |
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| Q |
101 |
attatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctg |
200 |
Q |
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| T |
42445970 |
attatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctg |
42446069 |
T |
|
| Q |
201 |
ccataatgacttctgcagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
291 |
Q |
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| T |
42446070 |
ccataatgacttctgcagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
42446160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 3207962 - 3207862
Alignment:
| Q |
98 |
aacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaat |
197 |
Q |
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| T |
3207962 |
aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaat |
3207863 |
T |
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| Q |
198 |
c |
198 |
Q |
| |
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| T |
3207862 |
c |
3207862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 3179002 - 3179090
Alignment:
| Q |
110 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
198 |
Q |
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| T |
3179002 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3179090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 3239838 - 3239750
Alignment:
| Q |
110 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
198 |
Q |
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| T |
3239838 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3239750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 3201955 - 3201888
Alignment:
| Q |
131 |
catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
198 |
Q |
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| T |
3201955 |
catcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc |
3201888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 3225764 - 3225703
Alignment:
| Q |
137 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
198 |
Q |
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| T |
3225764 |
agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatc |
3225703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 5725736 - 5725700
Alignment:
| Q |
93 |
atttcaacattatgtcaggcacatcaatgtcatgccc |
129 |
Q |
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| T |
5725736 |
atttcaacattatctcaggcacatccatgtcatgccc |
5725700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 68159 - 68220
Alignment:
| Q |
93 |
atttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttg |
154 |
Q |
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| T |
68159 |
atttcaacattatctcaggcacatccatgtcatgccctcatgtaagtggattagcggctttg |
68220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 18214753 - 18214797
Alignment:
| Q |
166 |
tcatcctgattggtcaccagcagccataaaatctgccataatgac |
210 |
Q |
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| T |
18214753 |
tcatcctgattggtcacctgcagctataaaatctgctatcatgac |
18214797 |
T |
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