View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20501_high_14 (Length: 275)

Name: NF20501_high_14
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20501_high_14
NF20501_high_14
[»] chr3 (6 HSPs)
chr3 (17-200)||(38682765-38682950)
chr3 (17-201)||(52023756-52023940)
chr3 (211-259)||(13662836-13662883)
chr3 (211-259)||(26293316-26293363)
chr3 (211-259)||(36054756-36054803)
chr3 (219-259)||(46251960-46251999)
[»] chr8 (4 HSPs)
chr8 (17-249)||(40013046-40013285)
chr8 (211-259)||(28620132-28620179)
chr8 (211-259)||(42275261-42275308)
chr8 (211-259)||(29260025-29260072)
[»] chr6 (2 HSPs)
chr6 (96-201)||(7858057-7858162)
chr6 (211-259)||(6476462-6476509)
[»] chr4 (1 HSPs)
chr4 (211-258)||(52109695-52109741)
[»] chr7 (2 HSPs)
chr7 (211-259)||(30111091-30111138)
chr7 (211-259)||(35089855-35089902)
[»] chr5 (1 HSPs)
chr5 (227-259)||(10571399-10571431)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 38682950 - 38682765
Alignment:
Q  17 aatatttgggaaggtgaagtgcaaagattgctggaatgtttgagttctcttnnnnnnn-ta-atatcagatattgcatttctgcaaagaatctacacgac 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||    
T  38682950 aatatttgggaaggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaaatatatatcagatattgcatttctgcaaagaatctacacgac 38682851  T
Q  115 agtggttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatct 200  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38682850 agaggttcgacgtcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatct 38682765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 52023756 - 52023940
Alignment:
Q  17 aatatttgggaaggtgaagtgcaaagattgctggaatgtttgagttctcttnnnnnnntaatatcagatattgcatttctgcaaagaatcta-cacgaca 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||    
T  52023756 aatatttgggaaggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaa-aatatcagatattgcatttctgcaaagaatctatcacgaca 52023854  T
Q  116 gtggttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatctt 201  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52023855 gaggttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatacatgtatctt 52023940  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 13662883 - 13662836
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    ||||||| ||||||||||| || |||||||||||||||| |||||||||    
T  13662883 tctcaaggttatgtgtggg-aggcagaaaagtctcaaggctaggtgtga 13662836  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 26293316 - 26293363
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||||    
T  26293316 tctcaaggctatgtgtggg-agacagaaaagtctcaagattaggtgtga 26293363  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 36054756 - 36054803
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||  |||||||||| ||||| |||||||||||||||||||||||    
T  36054756 tctcaaggctatgtgtggg-agacaaaaaagtctcaaggttaggtgtga 36054803  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 46251960 - 46251999
Alignment:
Q  219 ttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  46251960 ttatgtgtggg-agacagaaaagtctcaaggctaggtgtga 46251999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 40013046 - 40013285
Alignment:
Q  17 aatatttgggaaggtgaagtgcaaagattgctggaatgtttgagttctcttnnnnnnntaata--tcagatattgcatttctgcaaagaatctacacgac 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||        || |  |||||||||||||||||||| ||||||||||||||    
T  40013046 aatatttgggaaggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaaaaaaaaatcagatattgcatttctgcagagaatctacacgac 40013145  T
Q  115 agtggttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtata---tatgtatcttct-nnnnnnn 210  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||            
T  40013146 agaggttcgacgtcacaaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatagtatgtatcttctaaaaaaaa 40013245  T
Q  211 tctc-aagtttatgtgtggggagacagaaaagtctcaagg 249  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  40013246 tctcaaagtctatgtgtggggagacagaaaagtctcaagg 40013285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 28620179 - 28620132
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  28620179 tctcaaggttatgtgtggg-agacagaaaagtctcaagattaggtgtga 28620132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 42275308 - 42275261
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  42275308 tctcaaggttatgtgtggg-agacagaaaagtctcaaggctaggtgtga 42275261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 29260025 - 29260072
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||  |||||||||| ||| |||||||||||||||||||||||||    
T  29260025 tctcaaggctatgtgtggg-agatagaaaagtctcaaggttaggtgtga 29260072  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 7858057 - 7858162
Alignment:
Q  96 tgcaaagaatctacacgacagtggttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatg 195  Q
    ||||||||| ||||| ||||   |||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  7858057 tgcaaagaacctacatgacatatgttctacgtcacgaatcaccacgatattttgtatccagcatgccaatgaagaaaatgtcttttcaaaagtgtatatg 7858156  T
Q  196 tatctt 201  Q
    ||||||    
T  7858157 tatctt 7858162  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 6476462 - 6476509
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||  |||||||||| ||||||||||||||||||| |||||||||    
T  6476462 tctcaaggctatgtgtggg-agacagaaaagtctcaaggctaggtgtga 6476509  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 52109741 - 52109695
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtg 258  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  52109741 tctcaaggttatgtgtggg-agacagaaaagtctcaaggctaggtgtg 52109695  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 30111138 - 30111091
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||  |||||||||| ||||| |||||||||||||||||||||||    
T  30111138 tctcaaggctatgtgtggg-agacaaaaaagtctcaaggttaggtgtga 30111091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 35089855 - 35089902
Alignment:
Q  211 tctcaagtttatgtgtggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||  |||||||||| ||| |||||||||||||||||||||||||    
T  35089855 tctcaaggctatgtgtggg-agatagaaaagtctcaaggttaggtgtga 35089902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 10571431 - 10571399
Alignment:
Q  227 ggggagacagaaaagtctcaaggttaggtgtga 259  Q
    |||||||||||||||||| ||||||||||||||    
T  10571431 ggggagacagaaaagtcttaaggttaggtgtga 10571399  T

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