View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20501_high_3 (Length: 614)

Name: NF20501_high_3
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20501_high_3
NF20501_high_3
[»] chr3 (3 HSPs)
chr3 (6-599)||(9173061-9173682)
chr3 (96-170)||(25904196-25904271)
chr3 (526-587)||(9172369-9172430)
[»] chr8 (3 HSPs)
chr8 (6-257)||(12298248-12298500)
chr8 (318-465)||(12298013-12298160)
chr8 (6-65)||(23470456-23470515)
[»] chr7 (4 HSPs)
chr7 (6-257)||(15897523-15897775)
chr7 (257-496)||(15897257-15897500)
chr7 (526-599)||(31238850-31238923)
chr7 (534-597)||(8578601-8578664)
[»] chr2 (2 HSPs)
chr2 (257-496)||(2203525-2203768)
chr2 (6-257)||(2203250-2203502)
[»] chr5 (3 HSPs)
chr5 (6-257)||(18860357-18860609)
chr5 (257-496)||(18860632-18860875)
chr5 (558-599)||(34607141-34607182)
[»] chr1 (3 HSPs)
chr1 (6-257)||(24319421-24319674)
chr1 (257-478)||(24319697-24319922)
chr1 (536-599)||(29406859-29406922)
[»] chr6 (3 HSPs)
chr6 (257-497)||(28654247-28654499)
chr6 (527-599)||(28844792-28844864)
chr6 (166-257)||(28653614-28653705)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 6 - 599
Target Start/End: Original strand, 9173061 - 9173682
Alignment:
Q  6 attttgcatgtggca-tattatgaaaaaactttttgaaaaggtgggtggttccttgaatgagaataatgattttaataattgtttcacgtcatgtgtttg 104  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  9173061 attttgcatgtggcagtattatgaaaaaactttctgaaaaggtgggtggttccttgaatgagaataatgattttaataatcgtttcaagtcatgtgtttg 9173160  T
Q  105 gaactcagagtccttgaagaatttgaattagaatggaataatattattagtcattataagctggaaggaaatggttggctttctacaatgtatgaactta 204  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  9173161 gaactcatagtccttgaagaatttgaattagaatggaataatcttattagtcattataagctggaa----atggttggctttctacaatgtatgaactta 9173256  T
Q  205 gaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg---------------------tgaaaattcattctttagtaactact 283  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||                     ||||||||||||||||||||||||||    
T  9173257 gaagcatgtagatacctgcttattttaaagttacattaatggttggagttttgagaacaagctcaagatcagagtgaaaattcattctttagtaactact 9173356  T
Q  284 tgaatgtgaacctaactttagtggaattttgg----gatttgattcttctttaggagcactgagacacaaagaacttcttgcagagaataatacacttca 379  Q
    ||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  9173357 tgaatgtgaacctaactttagtggaattttggatacgatttgattctgctttaggagcacagagacacaaagaacttcttgtagagaataatacacttca 9173456  T
Q  380 ttctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttttatatatttcagaaggagttgtggagt 479  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  9173457 ttctaatccagaattgaagatgcacctgaatttagagaagcatggtagagaagtttatcctcgtgaaattttttatatattttagaaggagttgtggagt 9173556  T
Q  480 gcatgtgtagattgtggggcttataattcat------gtgtaagtgcatgtgtgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaa 573  Q
    |||||||||||||||||||||||||||||||      |||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9173557 gcatgtgtagattgtggggcttataattcatgtgtgagtgtgagtgtatgcgtgaatggaaaatgagaatggcacatgactaacttaagtgatgttttaa 9173656  T
Q  574 tctcatctctttattttaatctgatg 599  Q
    |||| || |||||||||||| |||||    
T  9173657 tctcgtccctttattttaatttgatg 9173682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 25904271 - 25904196
Alignment:
Q  96 atgtgtttggaactcagagtcct-tgaagaatttgaattagaatggaataatattattagtcattataagctggaa 170  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25904271 atgtgtttggaactcagagtcctatcaagaatttgaattagaatggaataatattattagtcattataagctggaa 25904196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 587
Target Start/End: Complemental strand, 9172430 - 9172369
Alignment:
Q  526 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttat 587  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  9172430 tgaatgggaaatggaaatggcacatgactaacttaagtgatgttttaatctcatccctttat 9172369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 12298500 - 12298248
Alignment:
Q  6 attttgcatgtggcatattatgaaaaaactttttgaaaaggtgggtggttccttgaatgagaataatgattttaataattgtttcacgtcatgtgtttgg 105  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||||  |||||||||| ||||||||||| |||||| ||||||  ||||||||||||    
T  12298500 attttgcatgtggcatattctcaaaaaactttcagaaaaggtgggtggcaccttgaatgataataatgatttcaataatcgtttcaattcatgtgtttgg 12298401  T
Q  106 aactcagagtcct-tgaagaatttgaattagaatggaataatattattagtcattataagctggaaggaaatggttggctttctacaatgtatgaactta 204  Q
    |||| |||||||| ||||||||||||||| ||||||||| ||||||||| | ||| |  | |||||| ||||||||||||||||||||||||||||||||    
T  12298400 aacttagagtcctctgaagaatttgaatttgaatggaatgatattattaatgattttgggttggaagaaaatggttggctttctacaatgtatgaactta 12298301  T
Q  205 gaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg 257  Q
    || ||||||||||||  |||||||||||||||| ||| |||| |||| |||||    
T  12298300 gacgcatgtggataccagcttattttaaagatatatttatggctggaattttg 12298248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 318 - 465
Target Start/End: Complemental strand, 12298160 - 12298013
Alignment:
Q  318 tttgattcttctttaggagcactgagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagaga 417  Q
    ||||||||| |||||| ||||| ||| |||||||||||||| ||||| |||  |||||||||||||| || || ||||||||||||| || |||||||||    
T  12298160 tttgattctgctttagaagcacagaggcacaaagaacttctggcagataatgctacacttcattctattccagcattgaagatgcacgtggatttagaga 12298061  T
Q  418 accatgctagagaggtttatcctcatgaaattttttatatatttcaga 465  Q
    | |||| ||||||| ||||| ||||||||| |||||| ||||||||||    
T  12298060 agcatggtagagagatttatactcatgaaaatttttacatatttcaga 12298013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 23470515 - 23470456
Alignment:
Q  6 attttgcatgtggcatattatgaaaaaactttttgaaaaggtgggtggttccttgaatga 65  Q
    |||||| ||||||||||||| ||||||| ||| |||||| ||||||| ||| ||||||||    
T  23470515 attttgtatgtggcatattaggaaaaaaatttctgaaaaagtgggtgcttctttgaatga 23470456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 15897775 - 15897523
Alignment:
Q  6 attttgcatgtggcatattatgaaaaaactttttgaaaaggtgggtggttccttgaatgagaataatgattttaataattgtttcacgtcatgtgtttgg 105  Q
    |||||||||||| |||||| | ||||||||||  |||||||||||| ||||| || ||||||||| || ||||||| || |||||| ||||||||| |||    
T  15897775 attttgcatgtgccatattctaaaaaaactttcagaaaaggtgggtagttccatggatgagaatagtggttttaatgatcgtttcaagtcatgtgtctgg 15897676  T
Q  106 aactcagagtccttg-aagaatttgaattagaatggaataatattattagtcattataagctggaaggaaatggttggctttctacaatgtatgaactta 204  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||| |||| ||  ||||||||||||| |||||||||||||||||||| || |    
T  15897675 aactcagagtccttggaagaatttgatttggaatggaataatattattagtgattacaacttggaaggaaatggatggctttctacaatgtatgatctaa 15897576  T
Q  205 gaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg 257  Q
    ||||||||||||||| ||| ||||||||||||||||| |||| |||| |||||    
T  15897575 gaagcatgtggatacctgcatattttaaagatacatttatggctggaattttg 15897523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 257 - 496
Target Start/End: Complemental strand, 15897500 - 15897257
Alignment:
Q  257 gtgaaaattcattctttagtaactacttgaatgtgaacctaactttagtggaattttggg----atttgattcttctttaggagcactgagacacaaaga 352  Q
    ||||||||||||||||| | ||||||||||||   ||| |||||||||||||||| ||||    |||||||||| |||||| |||||  |||||||||||    
T  15897500 gtgaaaattcattctttggcaactacttgaatcataacttaactttagtggaattctgggtgcgatttgattctgctttagcagcacaaagacacaaaga 15897401  T
Q  353 acttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttt 452  Q
    |||| |||| || |||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||||| |||| ||||  |||    
T  15897400 actttttgctgataataatacacttcattctaatccataattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacgaaaacttt 15897301  T
Q  453 tatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 496  Q
    || |||||||| ||||||||||||||||||||||||||||||||    
T  15897300 tacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 15897257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 31238850 - 31238923
Alignment:
Q  526 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatg 599  Q
    ||||||| | |||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  31238850 tgaatggcacatgacaatagcacatgactcacttaagtgatgttttaatctcatccctttattttaatctgatg 31238923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 597
Target Start/End: Complemental strand, 8578664 - 8578601
Alignment:
Q  534 aaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctga 597  Q
    ||||||||||| |||||||||||||||| | |||||||||| ||||| |||  |||||||||||    
T  8578664 aaatgagaatgacacatgactaacttaagttatgttttaatttcatcccttccttttaatctga 8578601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 257 - 496
Target Start/End: Original strand, 2203525 - 2203768
Alignment:
Q  257 gtgaaaattcattctttagtaactacttgaatgtgaacctaactttagtggaattttggg----atttgattcttctttaggagcactgagacacaaaga 352  Q
    ||||||||||||||||| | ||||||||||||   ||| |||||||||| ||||| ||||    |||||||||| |||||| |||||  |||||||||||    
T  2203525 gtgaaaattcattctttggcaactacttgaatcataacttaactttagtagaattctgggtgcgatttgattctgctttagcagcacaaagacacaaaga 2203624  T
Q  353 acttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttt 452  Q
    |||| |||| || |||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||  |||    
T  2203625 actttttgctgataataatacacttcattctaatccagaattgaatatgcacatgaatttagagaagcacgctagagaggtttatactcatgaaaacttt 2203724  T
Q  453 tatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 496  Q
    || |||||||| ||||||||||||||||||||||||||||||||    
T  2203725 tacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 2203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 2203250 - 2203502
Alignment:
Q  6 attttgcatgtggcatattatgaaaaaactttttgaaaaggtgggtggttccttgaatgagaataatgattttaataattgtttcacgtcatgtgtttgg 105  Q
    ||||||||||||||||||| | ||||||||||  |||||||||||| ||||| || ||||||||| || ||||||| || |||||| ||||||||| |||    
T  2203250 attttgcatgtggcatattctaaaaaaactttcagaaaaggtgggtagttccatggatgagaatagtggttttaatgatcgtttcaagtcatgtgtctgg 2203349  T
Q  106 aactcagagtccttg-aagaatttgaattagaatggaataatattattagtcattataagctggaaggaaatggttggctttctacaatgtatgaactta 204  Q
    ||||||||||||| | |||||||||| || ||||||||||||||||||||| |||| |   ||||||||||||| |||||||||||||||||||| || |    
T  2203350 aactcagagtcctcggaagaatttgatttggaatggaataatattattagtgattacagcttggaaggaaatggatggctttctacaatgtatgatctaa 2203449  T
Q  205 gaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg 257  Q
    |||||||||||||||  || ||||||||||||||||| |||| |||| |||||    
T  2203450 gaagcatgtggataccggcatattttaaagatacatttatggctggaattttg 2203502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 18860357 - 18860609
Alignment:
Q  6 attttgcatgtggcatattatgaaaaaactttttgaaaaggtgggtggttccttgaatgagaataatgattttaataattgtttcacgtcatgtgtttgg 105  Q
    ||||||||||||||||||| | ||||||||||  ||||||||| || ||||| || ||||||||| || ||||||| || |||||| ||||||||| |||    
T  18860357 attttgcatgtggcatattctaaaaaaactttcagaaaaggtgagtagttccatggatgagaatagtggttttaattatcgtttcaagtcatgtgtctgg 18860456  T
Q  106 aactcagagtccttg-aagaatttgaattagaatggaataatattattagtcattataagctggaaggaaatggttggctttctacaatgtatgaactta 204  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||| |||| |   ||||||||||||| |||||||||||||| ||||| || |    
T  18860457 aactcagagtccttggaagaatttgatttggaatggaataatattattagtgattacagcttggaaggaaatggatggctttctacaatatatgatctaa 18860556  T
Q  205 gaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg 257  Q
    |||||||||||||||  || ||||||||||||||||| |||| |||| |||||    
T  18860557 gaagcatgtggataccggcatattttaaagatacatttatggctggaattttg 18860609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 257 - 496
Target Start/End: Original strand, 18860632 - 18860875
Alignment:
Q  257 gtgaaaattcattctttagtaactacttgaatgtgaacctaactttagtggaattttggg----atttgattcttctttaggagcactgagacacaaaga 352  Q
    ||||||||||||||||| | ||||||||||||   ||| |||||||||| ||||| ||||    |||||||| | |||||| |||||  |||||||||||    
T  18860632 gtgaaaattcattctttggcaactacttgaatcataacttaactttagtagaattctgggtgcgatttgattatgctttagcagcacaaagacacaaaga 18860731  T
Q  353 acttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttt 452  Q
    |||| ||||  | |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||  |||    
T  18860732 actttttgctaataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaaccacgctagagaggtttatactcacgaaaacttt 18860831  T
Q  453 tatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 496  Q
    || |||||||| ||| ||||||||||||||||||||||||||||    
T  18860832 tacatatttcaaaagaagttgtggagtgcatgtgtagattgtgg 18860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 34607182 - 34607141
Alignment:
Q  558 ttaaatgatgttttaatctcatctctttattttaatctgatg 599  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
T  34607182 ttaagtgatgttttaatctcatccctttattttaatttgatg 34607141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 24319421 - 24319674
Alignment:
Q  6 attttgcatgtggcatattatgaaaaaa-ctttttgaaaaggtgggtggttccttgaatgagaataatgattttaataattgtttcacgtcatgtgtttg 104  Q
    ||||||||||||||||||| | |||||| ||||  ||||||||||||  |||| || ||||||||| || ||||||| || |||||| ||||||||| ||    
T  24319421 attttgcatgtggcatattctaaaaaaaactttcagaaaaggtgggttattccatggatgagaatagtggttttaatgatcgtttcaagtcatgtgtctg 24319520  T
Q  105 gaactcagagtccttg-aagaatttgaattagaatggaataatattattagtcattataagctggaaggaaatggttggctttctacaatgtatgaactt 203  Q
    |||||||||||||||| |||||||||| ||  |||||||||||||||||||| ||||||   |||||||||||||   |||||||||||||||||| ||     
T  24319521 gaactcagagtccttggaagaatttgatttgaaatggaataatattattagtgattatagcttggaaggaaatggagtgctttctacaatgtatgatcta 24319620  T
Q  204 agaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg 257  Q
    ||||||||||||||||   | ||||||||||||||||| |||| |||| |||||    
T  24319621 agaagcatgtggataccgacatattttaaagatacatttatggctggaattttg 24319674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 257 - 478
Target Start/End: Original strand, 24319697 - 24319922
Alignment:
Q  257 gtgaaaattcattctttagtaactacttgaatgtgaacctaactttagtggaattttggg----atttgattcttctttaggagcactgagacacaaaga 352  Q
    ||||||||||||||||| | |||||||| |||   ||| |||||||||||||||| ||||    |||||||||| |||||| |||||  || ||||||||    
T  24319697 gtgaaaattcattctttgggaactacttaaatcataacttaactttagtggaattctgggtgcgatttgattctgctttagcagcacaaaggcacaaaga 24319796  T
Q  353 acttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttt 452  Q
    |||| |||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||| |||| ||||  |||    
T  24319797 actttttgctgataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacgaaaaattt 24319896  T
Q  453 tatatatttcagaaggagttgtggag 478  Q
    || |||||||| ||||||||||||||    
T  24319897 tacatatttcaaaaggagttgtggag 24319922  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 599
Target Start/End: Complemental strand, 29406922 - 29406859
Alignment:
Q  536 atgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatg 599  Q
    |||| ||| |||||||||| | |||| |||||||||||||||||| ||||||||||||||||||    
T  29406922 atgacaatagcacatgactcatttaagtgatgttttaatctcatccctttattttaatctgatg 29406859  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 497
Target Start/End: Complemental strand, 28654499 - 28654247
Alignment:
Q  257 gtgaaaattcattctttagtaactacttgaatgtgaacctaactttagtggaattttggg----atttgattcttctttaggagcactgagacacaaaga 352  Q
    |||||||||||||||||  |||||||||||||  ||| || ||||||||||||| ||||     |||||||| | |||||| | |||  |  |||||| |    
T  28654499 gtgaaaattcattctttgctaactacttgaataagaatcttactttagtggaatattggatgcaatttgattatgctttagaatcacatatgcacaaaca 28654400  T
Q  353 acttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctca--------tg 444  Q
    |||| ||| ||| ||| || |||||| ||||| || | |||||||||||||| || ||||| |||| || | || |||||||||  ||||        |     
T  28654399 actttttgtagataatgatgcacttccttctattccaaaattgaagatgcacatggatttaaagaagcaaggtaaagaggtttacactcacatacttttt 28654300  T
Q  445 aaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggg 497  Q
     | ||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  28654299 tacttttttaaatattttggagggagttgtggagtgcatgtgtagattgtggg 28654247  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 599
Target Start/End: Original strand, 28844792 - 28844864
Alignment:
Q  527 gaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatg 599  Q
    |||||| | |||| ||| |||||||||| | |||| |||||||||||||||| | ||||||||||||||||||    
T  28844792 gaatggcacatgacaatagcacatgactcatttaagtgatgttttaatctcaaccctttattttaatctgatg 28844864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 28653614 - 28653705
Alignment:
Q  166 tggaaggaaatggttggctttctacaatgtatgaacttagaagcatgtggatacatgcttattttaaagatacattaatggttggagttttg 257  Q
    |||||| |||||  || ||||||| ||| ||||| ||| ||||||||||||||| | |||| |||||||||| ||| |||||| || |||||    
T  28653614 tggaagaaaatgaatgactttctaaaatatatgatctttgaagcatgtggatacctacttagtttaaagatatatttatggttagaattttg 28653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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