View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20501_high_4 (Length: 576)
Name: NF20501_high_4
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Original strand, 50392907 - 50393453
Alignment:
| Q |
15 |
aatatggcggttggtaattccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50392907 |
aatatggcggttggtaattccattggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcct |
50393006 |
T |
|
| Q |
115 |
cctttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacct |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393007 |
cctttcttatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacct |
50393106 |
T |
|
| Q |
215 |
ccttagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393107 |
ccttagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctata |
50393206 |
T |
|
| Q |
315 |
ctaaacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgcta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393207 |
ctaaacttttttggttactttatgatttggttatcagtcaccaaaaaaatagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgcta |
50393306 |
T |
|
| Q |
415 |
attctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttgg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
50393307 |
attctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggagcggttttgggaattcttaaaggttatgttgg |
50393406 |
T |
|
| Q |
515 |
tcttagtggtgcaataatcacacagctttactctgctatttactatg |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393407 |
tcttagtggtgcaataatcacacagctttactctgctatttactatg |
50393453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Original strand, 50384490 - 50385034
Alignment:
| Q |
17 |
tatggcggttggtaattccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcc |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
50384490 |
tatggcggtaggtaattccattggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcc |
50384589 |
T |
|
| Q |
117 |
tttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctcc |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
50384590 |
tttctaatcatggcagcagccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctcc |
50384689 |
T |
|
| Q |
217 |
ttagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatact |
316 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
50384690 |
ttagttttttcaaagactttggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattct |
50384789 |
T |
|
| Q |
317 |
aaacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaat |
416 |
Q |
| |
|
|| || ||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50384790 |
caatttctttggttacttcatgatttggttatcagttaccaaaaaaatagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaat |
50384889 |
T |
|
| Q |
417 |
tctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50384890 |
tctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtc |
50384989 |
T |
|
| Q |
517 |
ttagtggtgcaataatcacacagctttactctgctatttactatg |
561 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50384990 |
tcagtggtgcaatcatcacacagctttactctgctatttattatg |
50385034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 36 - 556
Target Start/End: Original strand, 50389654 - 50390174
Alignment:
| Q |
36 |
attggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcag |
135 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | || | |
|
|
| T |
50389654 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
50389753 |
T |
|
| Q |
136 |
ccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagttttttcaaagattt |
235 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50389754 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
50389853 |
T |
|
| Q |
236 |
tggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttacttt |
335 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| || || ||||||||||| |
|
|
| T |
50389854 |
tggtagcaatgttggtatccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttc |
50389953 |
T |
|
| Q |
336 |
atgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaaca |
435 |
Q |
| |
|
|||||||||||||| | || | ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50389954 |
atgatttggttatccataacaaaaaaaattgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaaca |
50390053 |
T |
|
| Q |
436 |
ctggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatcac |
535 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||||| ||||| ||| |||||||||||||||| || ||||| |
|
|
| T |
50390054 |
ccggttcacttgttacttgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaaggatatcttggtcttagtggtgctatcatcac |
50390153 |
T |
|
| Q |
536 |
acagctttactctgctattta |
556 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
50390154 |
acaactttactctgctattta |
50390174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 84 - 556
Target Start/End: Original strand, 50406589 - 50407061
Alignment:
| Q |
84 |
atcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaa |
183 |
Q |
| |
|
||||| ||||| |||||||| | ||||| || ||||| |||||| |||| | ||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
50406589 |
atcacaggacgatggttcgtggtgtttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactctagtaccataaaaacat |
50406688 |
T |
|
| Q |
184 |
cacttggctatgaccaaagcacactaaacctccttagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatcc |
283 |
Q |
| |
|
| | | ||||||||||| || || |||||||||||||| |||||||| || ||| ||||| ||||||| | | || || |||| ||| || || |
|
|
| T |
50406689 |
ccttagcctatgaccaaacaactcttaacctccttagtttcttcaaagacttaggtggcaaccttggtgttttctctggcttaatcaatgaaatcacacc |
50406788 |
T |
|
| Q |
284 |
accttgggtagttttaacaataggtgctatactaaacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttgg |
383 |
Q |
| |
|
||||| || ||| | |||| ||| | | || ||||| ||||||||||||||||| |||||| |||| || || ||| ||| ||||||||| |
|
|
| T |
50406789 |
accttatgttgttcttgcaattggttcccttcttaacttctttggttactttatgatatggttagcagtgactaaaaaaataccaaaaccgaaagtttgg |
50406888 |
T |
|
| Q |
384 |
caaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcg |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||| | |
|
|
| T |
50406889 |
caaatgtgtctttacatttgtataggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccccgaaactcgtggtg |
50406988 |
T |
|
| Q |
484 |
cggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatcacacagctttactctgctattta |
556 |
Q |
| |
|
|| ||||| ||| | ||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
50406989 |
ttgtgttggggattttaaaaggttatgttggtcttagtggtgctattatcacacaactttattctgctattta |
50407061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 492 - 561
Target Start/End: Original strand, 24223903 - 24223972
Alignment:
| Q |
492 |
ggaattcttaaaggctatgttggtcttagtggtgcaataatcacacagctttactctgctatttactatg |
561 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
24223903 |
ggaattcttaaatgttatgttggtcttagtggtgcaatcatcacacaactttactctgctatttattatg |
24223972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 470
Target Start/End: Original strand, 41333948 - 41334043
Alignment:
| Q |
375 |
aaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccct |
470 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| | ||||| ||| | | || ||||||||||||||||||||| |
|
|
| T |
41333948 |
aaagtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccct |
41334043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University