View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20501_high_8 (Length: 372)

Name: NF20501_high_8
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20501_high_8
NF20501_high_8
[»] chr8 (11 HSPs)
chr8 (13-354)||(953562-953906)
chr8 (94-277)||(2246709-2246892)
chr8 (109-241)||(14657709-14657841)
chr8 (119-269)||(26931874-26932024)
chr8 (109-241)||(14505726-14505858)
chr8 (109-241)||(17837157-17837289)
chr8 (109-241)||(37590040-37590172)
chr8 (109-241)||(15990413-15990545)
chr8 (177-240)||(34723924-34723987)
chr8 (191-241)||(1186550-1186600)
chr8 (185-246)||(4518354-4518415)
[»] chr6 (10 HSPs)
chr6 (109-277)||(23508853-23509021)
chr6 (109-277)||(16416570-16416738)
chr6 (91-214)||(13768185-13768308)
chr6 (109-264)||(34355747-34355902)
chr6 (109-202)||(187079-187172)
chr6 (180-264)||(13825454-13825538)
chr6 (177-241)||(9959232-9959296)
chr6 (185-241)||(1493321-1493377)
chr6 (183-241)||(16890215-16890273)
chr6 (184-264)||(10910512-10910592)
[»] chr1 (15 HSPs)
chr1 (109-273)||(24065186-24065350)
chr1 (94-276)||(29115381-29115563)
chr1 (95-200)||(3603510-3603615)
chr1 (91-241)||(4614895-4615045)
chr1 (109-277)||(40490017-40490185)
chr1 (127-241)||(13288092-13288206)
chr1 (115-277)||(49702395-49702556)
chr1 (109-239)||(41117196-41117326)
chr1 (176-264)||(9361749-9361837)
chr1 (94-241)||(5185260-5185407)
chr1 (109-195)||(6507914-6508000)
chr1 (176-264)||(24083357-24083445)
chr1 (109-241)||(30033587-30033719)
chr1 (115-239)||(34696112-34696236)
chr1 (119-241)||(24427509-24427630)
[»] chr4 (8 HSPs)
chr4 (94-277)||(13685977-13686160)
chr4 (91-241)||(37061034-37061184)
chr4 (94-243)||(16582326-16582475)
chr4 (109-241)||(16431358-16431490)
chr4 (109-276)||(20527782-20527949)
chr4 (109-241)||(18878179-18878311)
chr4 (109-241)||(30859368-30859500)
chr4 (94-158)||(4462660-4462724)
[»] chr2 (14 HSPs)
chr2 (94-277)||(11818431-11818614)
chr2 (164-264)||(44886277-44886377)
chr2 (91-202)||(33650921-33651032)
chr2 (130-239)||(36641366-36641475)
chr2 (109-241)||(20661198-20661330)
chr2 (109-241)||(16206544-16206676)
chr2 (91-238)||(23761360-23761507)
chr2 (91-238)||(23789504-23789651)
chr2 (109-267)||(2058687-2058845)
chr2 (110-241)||(11553332-11553463)
chr2 (91-238)||(23762493-23762640)
chr2 (130-241)||(27267912-27268023)
chr2 (177-241)||(11502327-11502391)
chr2 (109-241)||(23379874-23380005)
[»] chr7 (15 HSPs)
chr7 (95-277)||(33611022-33611204)
chr7 (91-276)||(48100725-48100910)
chr7 (109-239)||(13014966-13015096)
chr7 (109-239)||(15633236-15633366)
chr7 (91-236)||(11343102-11343247)
chr7 (94-258)||(44435440-44435604)
chr7 (109-236)||(3896475-3896602)
chr7 (94-241)||(48770117-48770264)
chr7 (109-238)||(30502514-30502643)
chr7 (183-264)||(17238750-17238831)
chr7 (109-241)||(24226210-24226342)
chr7 (109-241)||(32480220-32480352)
chr7 (177-256)||(3205202-3205281)
chr7 (185-241)||(8118878-8118934)
chr7 (185-241)||(47081731-47081787)
[»] scaffold0031 (1 HSPs)
scaffold0031 (110-277)||(44445-44613)
[»] chr3 (16 HSPs)
chr3 (94-258)||(18357095-18357260)
chr3 (95-241)||(49499415-49499561)
chr3 (109-239)||(16739433-16739563)
chr3 (109-234)||(29372955-29373080)
chr3 (95-206)||(36144766-36144877)
chr3 (109-241)||(6006038-6006170)
chr3 (94-241)||(18342639-18342787)
chr3 (109-241)||(53437541-53437672)
chr3 (109-238)||(38015066-38015194)
chr3 (109-241)||(53394840-53394971)
chr3 (109-275)||(31228209-31228375)
chr3 (179-241)||(31661046-31661108)
chr3 (96-194)||(35906922-35907020)
chr3 (185-238)||(31973506-31973559)
chr3 (185-241)||(8566019-8566075)
chr3 (185-241)||(31935245-31935301)
[»] chr5 (10 HSPs)
chr5 (91-206)||(23622543-23622658)
chr5 (109-239)||(2157780-2157910)
chr5 (91-236)||(29955449-29955594)
chr5 (95-277)||(19237635-19237811)
chr5 (109-241)||(19741533-19741665)
chr5 (94-233)||(36044930-36045069)
chr5 (109-241)||(22292384-22292516)
chr5 (117-233)||(13948800-13948916)
chr5 (177-241)||(28246262-28246326)
chr5 (199-239)||(40299909-40299949)
[»] scaffold0341 (2 HSPs)
scaffold0341 (109-195)||(1939-2025)
scaffold0341 (109-195)||(9595-9681)
[»] scaffold0011 (1 HSPs)
scaffold0011 (176-264)||(191074-191162)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 953906 - 953562
Alignment:
Q  13 gtttacatgatatatagtcatataaatacatgcatctataatgtacttttaaggtacaannnnnnnnnnnnnnnnnnn---aaagaaatatgatcatacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                      ||||||| ||| ||||| |    
T  953906 gtttacatgatatatagtcatataaatacatgcatctataatgtatttttaaggtacaaaaatatttttttttttttttttaaagaaacatgctcatagc 953807  T
Q  110 attttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacc 209  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||     
T  953806 attttattaataataagaggttcaatacaattagatatgtgaaaataaacaacgggactagctagtaacgtgacttctcctgcaagaacatgagcaaact 953707  T
Q  210 cgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacatcgtatatttataatagtaccttttttgacaaa 309  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  953706 cgtttgcttgtcgctaaacaaactccaccctaaaattaataaagaaagaactaaacagagaccgacatcatatatttataatagtaccttttttgacaaa 953607  T
Q  310 aatatatttataaaactgaacggtgcgtctacaatcggtgtattt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  953606 aatatatttataaaactgaacggtgcgtctacaatcggtgtattt 953562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 94 - 277
Target Start/End: Original strand, 2246709 - 2246892
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  2246709 gaaatatgcttatagcatttcattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacatgactagctagtaacatgacttctcctgca 2246808  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    ||||||||||||| | ||||| ||||| |||||||||||||||||||| | ||  ||||||||||| |||| ||||||||||||    
T  2246809 agaacatgagcaacctcgtttgcttgttgcctaacaaactccaccctagagttggtaaagaaagaattaaacagagaccgacat 2246892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 14657709 - 14657841
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| || ||||||| ||||||||||| |||||| | |||||||||||   || | |||||||||||| |||||| ||||||| ||||||  | |    
T  14657709 catttcattgattataagagtttcaatacaattaggtatatcaaaataaacaatgtgactggctagtaacgtggcttctcttgcaagagcatgagatacc 14657808  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
      |||  ||||||||||||||||||||||||||    
T  14657809 ttgttggcttgtcgcctaacaaactccacccta 14657841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 26931874 - 26932024
Alignment:
Q  119 ataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttactt 218  Q
    |||||||||| ||||||||| || | ||| ||||||||||   |  || |||||||||| ||| |||||||||||||||||||| |||   | ||  |||    
T  26931874 ataataagagattcaatacattcggatatatgaaaataaatggcgagactagctagtaatgtggcttctcctgcaagaacatgaacaacttcattggctt 26931973  T
Q  219 gtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagag 269  Q
    || ||||||||||||| |||||| | ||  ||||||||||||||| |||||    
T  26931974 gttgcctaacaaactctaccctagagttggtaaagaaagaactaactagag 26932024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 14505858 - 14505726
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||  | ||| ||||||   ||||| | || | ||||||| ||||||||| |    
T  14505858 catttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaacc 14505759  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  14505758 acgttggcttgtcgcctaacaaactccacccta 14505726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 17837157 - 17837289
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||||||||| | || ||||||| |||| ||||| |  ||||||||  ||||| ||||||   ||||| |||||| |||||||  |||||||| |    
T  17837157 catttcattaataattaaagattcaatataatcgggtatatcgaaataaacggcaggactagctaaagacgtggcttctcttgcaagagtatgagcaacc 17837256  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  17837257 gcgttggcttgtcgcctaacaaactccacccta 17837289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 37590040 - 37590172
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| |||||||||||  ||||| | |||||||||  | | | ||||||   ||||| | || | ||||||| ||||||||| |    
T  37590040 catttcattaataataagagtttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagcatgagcaacc 37590139  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  37590140 acgttggcttgtcgcctaacaaactccacccta 37590172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 15990413 - 15990545
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||  | ||| ||||||   ||||| | || | ||||||| ||||||||| |    
T  15990413 catttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaacc 15990512  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     |||   ||||||||||||||||||||||||||    
T  15990513 acgtaggcttgtcgcctaacaaactccacccta 15990545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 34723924 - 34723987
Alignment:
Q  177 acgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccct 240  Q
    ||||| |||||| |||||||  |||||||| | ||||  |||||||||||||||||||||||||    
T  34723924 acgtggcttctcttgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccct 34723987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 1186600 - 1186550
Alignment:
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||||| ||||||||| | ||||  ||||||||||||||||||||||||||    
T  1186600 gcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccacccta 1186550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 4518415 - 4518354
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaatt 246  Q
    |||| ||||||| ||||||| | | ||||  |||||||||||||||||||||||||| ||||    
T  4518415 tctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaaactccaccctataatt 4518354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 109 - 277
Target Start/End: Original strand, 23508853 - 23509021
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||| ||| |||||||||||||||||||||||| |    
T  23508853 catttcattaataataagaggttcaatacaatcaggtatgtgaaattaaacaacgggactagctcgtaatgtggcttctcctgcaagaacatgagcaacc 23508952  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    || ||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  23508953 ccatttgcttgtcgcctaacaaactccaccctagaattggtaaagaaagaactaaatagagaccgacat 23509021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 277
Target Start/End: Complemental strand, 16416738 - 16416570
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||||||||||||||||||||||||||  ||||| |||||||||| ||   || |||||||||| ||||| ||||||||||||| | |||||| |    
T  16416738 catttcattaataataagaggttcaatacaattgggtatatgaaaataaataatgagactagctagtaatgtgacatctcctgcaagaatacgagcaacc 16416639  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
     | |||||||||||||||||||||| ||||||| | ||  ||||||||||| | |||||||||| ||||    
T  16416638 tcatttacttgtcgcctaacaaactacaccctagagttggtaaagaaagaattgaatagagaccaacat 16416570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 13768308 - 13768185
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | ||| ||||| |||||||||||||| |||||||||||| ||||| | |||||||||||||  | || |||||||||||||||||| |    
T  13768308 aaagaaatatgcttatagcatttgattaataataagagattcaatacaatcgggtatataaaaataaacaacaaaactaactagtaacgtgacttctctt 13768209  T
Q  191 gcaagaacatgagcaaacccgttt 214  Q
    ||||||| |||  ||| |||||||    
T  13768208 gcaagaatatggacaaccccgttt 13768185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 34355747 - 34355902
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||| | ||| ||||||||||| ||  ||||| ||||||| ||||||||| |    
T  34355747 catttcattgataataagagtttcaatacaattgggtatatcaaaataaacagcgggactagctagtaacatggtttctcttgcaagagcatgagcaacc 34355846  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
     ||||  ||| |||| ||||||||| ||||||| | |||| ||| |||||| ||||    
T  34355847 tcgttggcttttcgcataacaaacttcaccctagagttaaaaaataaagaagtaaa 34355902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 187172 - 187079
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatga 202  Q
    ||||| |||||||||||||| |||||||||||  | ||||| |||||||| |||| || ||||||| || ||| ||||||||||||||||||||    
T  187172 catttcattaataataagagattcaatacaattggatatgttaaaataaataacaagactagctagaaatgtggcttctcctgcaagaacatga 187079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 13825538 - 13825454
Alignment:
Q  180 tgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
    ||||||||| |||||| |||||||||| | ||||  |||||||||||||||||||||| ||||| |||  |||||||||| ||||    
T  13825538 tgacttctcttgcaagtacatgagcaaccgcgttggcttgtcgcctaacaaactccacactaaagttagaaaagaaagaagtaaa 13825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 9959296 - 9959232
Alignment:
Q  177 acgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||||| ||||| ||||||| ||||||||| | ||||  ||||||||||||||||||||||||||    
T  9959296 acgtgagttctcgtgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccacccta 9959232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 1493321 - 1493377
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||| ||||||| ||||||||| | ||||  ||||||||||||||||||||||||||    
T  1493321 tctcttgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccacccta 1493377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 16890273 - 16890215
Alignment:
Q  183 cttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||||| ||||||| ||||||||| | ||||   |||||||||||||||||||||||||    
T  16890273 cttctcttgcaagagcatgagcaaccgcgttgctttgtcgcctaacaaactccacccta 16890215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 10910592 - 10910512
Alignment:
Q  184 ttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
    ||||| ||||||| ||||||||| |  |||   ||||| ||||||||||||||||||||| |||  |||||||| ||||||    
T  10910592 ttctcttgcaagagcatgagcaaccgtgttagtttgtcacctaacaaactccaccctaaagttagaaaagaaaggactaaa 10910512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 24065350 - 24065186
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |    
T  24065350 catttcattaataataagaagttcaatacaatcgggtatgtgaaaataaacaacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacc 24065251  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccg 273  Q
     ||||| |||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||    
T  24065250 tcgtttgcttgtcgcctaacaaactccaccctaaagttggtaaagaaagaactaaacagagaccg 24065186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 94 - 276
Target Start/End: Complemental strand, 29115563 - 29115381
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||  |||||||||||||||||| |||||||| ||||| ||||||||||||||| || |||||||||||||||| |||| | ||    
T  29115563 gaaatatgcttatatcattgcattaataataagaggttccatacaatcgggtatatgaaaataaacaacatgactagctagtaacgtgacctctcttaca 29115464  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgaca 276  Q
     |||||||||||| | ||||| ||||||| |||||||||| ||||||| | ||  ||||||||||||| || | |||||||||    
T  29115463 ggaacatgagcaacctcgtttgcttgtcgtctaacaaactacaccctagagttggtaaagaaagaactgaacaaagaccgaca 29115381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 3603510 - 3603615
Alignment:
Q  95 aaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaa 194  Q
    ||||||| | ||| ||||| |||||||||||||||||||||||||||  |||| |||||||||||||| ||| |||||||||||||| | ||||||||||    
T  3603510 aaatatgtttataacatttcattaataataagaggttcaatacaatcgtgtatatgaaaataaacaacgggagtagctagtaacgtggcctctcctgcaa 3603609  T
Q  195 gaacat 200  Q
    ||||||    
T  3603610 gaacat 3603615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 241
Target Start/End: Complemental strand, 4615045 - 4614895
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | |||  |||| |||||||||| ||| |||||||||||| | ||||| ||||| |||||| | | ||| ||| |||||| ||||| ||    
T  4615045 aaagaaatatgtttataaaatttcattaataatacgagattcaatacaatcggttatgttaaaatcaacaacggaactagttagaaacgtggcttcttct 4614946  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||| |||||||||| | | |||  |||||||||| ||||||||||||||    
T  4614945 gcaagcacatgagcaaccacatttgtttgtcgcctagcaaactccacccta 4614895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 277
Target Start/End: Original strand, 40490017 - 40490185
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| ||||||| | || ||||| | |||||||||| | ||| || ||||||||| |||||||| ||||||| ||||||| | |    
T  40490017 catttcattgataataagagtttcaatatattccggtatatcaaaataaacagcgggactaactagtaacgcgacttctcttgcaagagcatgagcgacc 40490116  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
     | ||   ||||||||||||||||||||||||| | |||  |||||| || ||||||| ||| ||||||    
T  40490117 tcattggtttgtcgcctaacaaactccaccctagagttagaaaagaatgagctaaataaagaacgacat 40490185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 13288206 - 13288092
Alignment:
Q  127 aggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgccta 226  Q
    ||||| |||||||||||  |||| |||||||||||| ||| ||||||| ||  || ||||||||||||| |||||||||| | | |||  ||||||||||    
T  13288206 aggttaaatacaatcagacatgttaaaataaacaacgggactagctagaaatatggcttctcctgcaagcacatgagcaaccgcatttgtttgtcgccta 13288107  T
Q  227 acaaactccacccta 241  Q
     ||||||||||||||    
T  13288106 gcaaactccacccta 13288092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 49702556 - 49702395
Alignment:
Q  115 attaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgttt 214  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||  ||||||  ||||||  || | ||| |||||| |||||||| || ||||||     
T  49702556 attaataataagaggttcaatacaatctggtatattaaaataaacaattggattatttagtaatatgtc-tcttctgcaataacatgagaaaccccgttg 49702458  T
Q  215 acttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    || |||| ||||||||||| || |||| | ||  |||||||| |||  || ||||||||||||    
T  49702457 acatgtcacctaacaaacttcatcctagagttggtaaagaaataaccgaaaagagaccgacat 49702395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 41117326 - 41117196
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| ||||||| || || ||||||||  ||||| | |||||||||    ||| |||||||||||||| |||||| ||||||| ||||||||| |    
T  41117326 catttcattgataataatagtttgaatacaattgggtatctcaaaataaacggtgggactagctagtaacgtggcttctcttgcaagagcatgagcaacc 41117227  T
Q  209 ccgtttacttgtcgcctaacaaactccaccc 239  Q
     | ||  ||||||||||||||||||||||||    
T  41117226 tcattggcttgtcgcctaacaaactccaccc 41117196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 9361837 - 9361749
Alignment:
Q  176 aacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
    |||||| |||||| ||||||  ||||||||| | ||||  |||||||||||||||||||||||||| | |||  |||||||||||||||    
T  9361837 aacgtggcttctcttgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagaactaaa 9361749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 5185260 - 5185407
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| |||||||||||||  ||||||| | || ||||| | ||||||||   | ||| ||||| |||| |||||||||| ||||    
T  5185260 gaaatatgcttataacatttcattaataataagatattcaatatattcgggtatataaaaataaatggcgggactagctggtaatgtgacttctcttgca 5185359  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||||||| ||| | | ||   ||||||| |||||||||||||||||    
T  5185360 agaacatgaacaacctcattggtttgtcgcttaacaaactccacccta 5185407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 6507914 - 6508000
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaag 195  Q
    ||||| ||||||||||| |||||||||||| |  ||||| | |||||||||||   || |||||||||||||||||||| |||||||    
T  6507914 catttcattaataataacaggttcaatacatttgggtatattaaaataaacaaagagactagctagtaacgtgacttcttctgcaag 6508000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 24083445 - 24083357
Alignment:
Q  176 aacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
    |||||| |||||| ||||||  ||||||||| | ||||  ||||||||||||||||||||||| || | |||  |||||||||||||||    
T  24083445 aacgtggcttctcttgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccgtagagttagaaaagaaagaactaaa 24083357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 30033719 - 30033587
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| ||||||| |||  ||||| | |||||||||  | ||| ||||||   ||||| | || | ||||||| ||||||||| |    
T  30033719 catttcatttataataagagtttcaatataattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaacc 30033620  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     || |  ||||||||||||||||||||||||||    
T  30033619 acgctggcttgtcgcctaacaaactccacccta 30033587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 34696112 - 34696236
Alignment:
Q  115 attaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgttt 214  Q
    ||||||||| | || |||||||||||  ||||| ||||||||||||||  || ||||||| ||||||   |||||| | |||  |||||||| | | |||    
T  34696112 attaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagctagaaacgtggtctctccttcgagagtatgagcaaccacattt 34696211  T
Q  215 acttgtcgcctaacaaactccaccc 239  Q
     |||||| |||| ||||||||||||    
T  34696212 tcttgtctcctagcaaactccaccc 34696236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 24427509 - 24427630
Alignment:
Q  119 ataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttactt 218  Q
    |||||||||| ||||||||||| | |||| | |||||||||| |||||| |||||| || |||  ||||| |||||||  |||||| | | | ||  |||    
T  24427509 ataataagagtttcaatacaatga-gtatttcaaaataaacagcaggatcagctaggaatgtggtttctcttgcaagagtatgagcgacctcattggctt 24427607  T
Q  219 gtcgcctaacaaactccacccta 241  Q
    ||||||||| |||||| ||||||    
T  24427608 gtcgcctaataaactcgacccta 24427630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 94 - 277
Target Start/End: Complemental strand, 13686160 - 13685977
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| |||||||||||||| |||||||||||| ||||| |||||||||||||  ||| ||||||||||||||||||||| ||||    
T  13686160 gaaatatgcttatagcatttcattaataataagagattcaatacaatcgggtatatgaaaataaacaatgggactagctagtaacgtgacttctcttgca 13686061  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| | ||  |||| |||||||| || | ||||||||||    
T  13686060 agaacatgagcaaccccgtttgcttgtcgcctaacaaactccaccctagagttggtaaacaaagaactgaacaaagaccgacat 13685977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 37061034 - 37061184
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | ||| |||||  ||||||||||||| |||||||||||| ||||||| |||||||||||| ||| ||||||| ||| || |||||| |    
T  37061034 aaagaaatatgcttataacatttcgttaataataagagattcaatacaatcgggtatgttaaaataaacaacgggactagctagaaacatggcttctctt 37061133  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||| |||||||||| | | |||  ||||| |||| ||||||||||||||    
T  37061134 gcaagcacatgagcaaccacatttgtttgtcacctagcaaactccacccta 37061184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 16582326 - 16582475
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||| ||||| ||| ||| | ||||||||||| || ||||||||||   ||||| | |||||||||    ||| ||||||||||||||||||||| ||||    
T  16582326 gaaacatgattatagcatatcattaataataatagtttcaatacaactgggtatttcaaaataaacggtgggactagctagtaacgtgacttctcttgca 16582425  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaa 243  Q
    ||| ||||||||  | ||||  |||||||||  |||||||||||||||||    
T  16582426 agagcatgagcagcctcgttggcttgtcgcccgacaaactccaccctaaa 16582475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 16431358 - 16431490
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||  ||||||||||    |||| | |||||||||| | ||| || ||||||||||| |||||| ||||||| ||||| ||| |    
T  16431358 catttcattaataataagaatttcaatacaactgagtatttcaaaataaacagcgggagtaactagtaacgtggcttctcttgcaagagcatgaacaacc 16431457  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||   |||||||||||||||||||||||||    
T  16431458 tcgttggtttgtcgcctaacaaactccacccta 16431490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 20527782 - 20527949
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||| ||||| | | ||||||   | ||| |||| ||||||  | | |||| ||||||| ||||||||| |    
T  20527782 catttcattgataataagagtttcaatacaatcgggtatatcataataaatggcgggactagcgagtaacaaggcctctcttgcaagagcatgagcaacc 20527881  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgaca 276  Q
    |||||  |||| ||||||||||||||||||||| | |||| |||   ||||||||||| ||| |||||    
T  20527882 ccgttagcttgccgcctaacaaactccaccctagagttaacaaaagtagaactaaataaagaacgaca 20527949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 18878311 - 18878179
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||||||||||| || ||||||||||   ||||| | | ||||||| ||  |||||||||  |||||| | |||| ||||| | |||||||||      
T  18878311 catttcattaataataatagtttcaatacaagtgggtatatcataataaacgacgagattagctaaaaacgtggcctctcgtgcaaaagcatgagcaact 18878212  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     | || |||||||||||||||||||||||||||    
T  18878211 gcattgacttgtcgcctaacaaactccacccta 18878179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 30859500 - 30859368
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||  | ||| ||| ||   ||||| | || | ||||||| ||||||||| |    
T  30859500 catttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagttaaagacgtggcctcccttgcaagagcatgagcaacc 30859401  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  30859400 acgttggcttgtcgcctaacaaactccacccta 30859368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 4462724 - 4462660
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaa 158  Q
    |||||||| | ||| ||||||||||||||||| || ||||||||| |||| ||| ||||||||||    
T  4462724 gaaatatgtttataacattttattaataataaaagtttcaatacattcagatatatgaaaataaa 4462660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 94 - 277
Target Start/End: Original strand, 11818431 - 11818614
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| |||||||||||||||||||||| |||  ||||| |||||||||| ||| ||| |||||||||||||| |||||||||||    
T  11818431 gaaatatgcttatagcatttcattaataataagaggttcaatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgca 11818530  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||| | ||  |||||||||||||||| |||||| |||||    
T  11818531 agaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctagagttggtaaagaaagaactaaacagagactgacat 11818614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 44886377 - 44886277
Alignment:
Q  164 ggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaa 263  Q
    ||||||||||  |||||| |||||| ||||||  ||||||||| | |||| ||||||||||||||||||||||||||| | |||  ||||||||||||||    
T  44886377 ggattagctaagaacgtggcttctcttgcaagtgcatgagcaaccgcgttgacttgtcgcctaacaaactccaccctagagttagaaaagaaagaactaa 44886278  T
Q  264 a 264  Q
    |    
T  44886277 a 44886277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 33651032 - 33650921
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | | | ||||| |||||||||||||  |||||||| ||  ||||||| |||||||||||| ||| ||||||| |||||||||||| ||    
T  33651032 aaagaaatatgtttagagcatttcattaataataagatattcaatacgattgggtatgttaaaataaacaacgggactagctagaaacgtgacttcttct 33650933  T
Q  191 gcaagaacatga 202  Q
    ||||| ||||||    
T  33650932 gcaagcacatga 33650921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 36641475 - 36641366
Alignment:
Q  130 ttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaaca 229  Q
    ||||||| |||  ||||| | |||||||||||| ||| |||||||||| ||| |||||  ||||||| ||||||||| | ||||  ||||||||||||||    
T  36641475 ttcaatataattgggtatctcaaaataaacaacgggactagctagtaatgtggcttcttttgcaagagcatgagcaacctcgttggcttgtcgcctaaca 36641376  T
Q  230 aactccaccc 239  Q
    ||||||||||    
T  36641375 aactccaccc 36641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 20661330 - 20661198
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| ||||| | || |||||||||||  ||||||| | |||| ||| | ||| ||||||||||||||   |||| ||||||| ||||||||| |    
T  20661330 catttcattgataatcaaagattcaatacaattgggtatgtcataatagacagcgggactagctagtaacgtggtgtctcttgcaagagcatgagcaacc 20661231  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
    | ||| ||||||| |||||||||||||||||||    
T  20661230 ctgttaacttgtcacctaacaaactccacccta 20661198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 16206676 - 16206544
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||  | ||| ||||||   ||||| | || | ||||||| ||||||||| |    
T  16206676 catttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaacc 16206577  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  16206576 acgttggcttgtcgcctaacaaactccacccta 16206544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 23761360 - 23761507
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||| ||| | ||| ||||| ||| ||||| |||| |||||||||||| ||||| | | |||||||  | ||| |||  ||||||  |   |||| |    
T  23761360 aaagaaacatgcttatagcatttcattgataatcagagtttcaatacaatcgggtatatcataataaacggcgggactagtgagtaacaaggtatctctt 23761459  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacc 238  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  23761460 gcaagagcatgagcaatcccgtttgcttgtcgcctaacaaactccacc 23761507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 23789504 - 23789651
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||| ||| | ||| ||||| ||| ||||| |||| |||||||||||| ||||| | | |||||||  | ||| |||  ||||||  |   |||| |    
T  23789504 aaagaaacatgcttatagcatttcattgataatcagagtttcaatacaatcgggtatatcataataaacggcgggactagtgagtaacaaggtatctctt 23789603  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacc 238  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  23789604 gcaagagcatgagcaatcccgtttgcttgtcgcctaacaaactccacc 23789651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 2058845 - 2058687
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | | |||||||| | |||||||||| ||||||   ||||| ||||||| |||||| || |    
T  2058845 catttaattgataataagagtttcaatacaattgggtatatcataataaacagcgggattagctaataacgtagtttctcttgcaagagcatgagtaacc 2058746  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatag 267  Q
      |||   |||||||||||||||||||||| || | ||   ||||||||| ||||||||    
T  2058745 gtgttggtttgtcgcctaacaaactccaccttagagttcgaaaagaaagagctaaatag 2058687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 11553463 - 11553332
Alignment:
Q  110 attttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacc 209  Q
    |||| |||||||||||||| ||||||| | || ||||| ||||||||||     ||| |||||||||| ||| |||||||||| ||||||||| ||| |     
T  11553463 atttcattaataataagagtttcaatatattcgggtatatgaaaataaatggtgggactagctagtaatgtggcttctcctgcgagaacatgatcaacct 11553364  T
Q  210 cgtttacttgtcgcctaacaaactccacccta 241  Q
    | ||  ||||||||| |  |||||||||||||    
T  11553363 cattagcttgtcgccgagtaaactccacccta 11553332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 23762493 - 23762640
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||| ||| | ||| ||||| ||| ||||| |||| |||||||||||| ||||| | | |||||||  | ||| |||| ||||||  | |  ||| |    
T  23762493 aaagaaacatgtttatagcatttcattgataatcagagtttcaatacaatcgggtatattataataaacggcgggactagcaagtaacaaggccactctt 23762592  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacc 238  Q
    |||||| || |||||| ||||||  |||||||||||||||||||||||    
T  23762593 gcaagagcacgagcaatcccgttagcttgtcgcctaacaaactccacc 23762640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 27267912 - 27268023
Alignment:
Q  130 ttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaaca 229  Q
    |||||||||||  ||||| | | |||||||||  ||| || ||||||||||| |||||| ||||||   |||||||| | ||||  |||||| |||||||    
T  27267912 ttcaatacaattgggtatttcataataaacaatgggactaactagtaacgtggcttctcttgcaagtgtatgagcaacctcgttagcttgtcacctaaca 27268011  T
Q  230 aactccacccta 241  Q
    ||||||||||||    
T  27268012 aactccacccta 27268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 11502391 - 11502327
Alignment:
Q  177 acgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||| |||||| |||||||  |||||||| | ||||  ||||||||||||||||||||||||||    
T  11502391 acgtggcttctcttgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccacccta 11502327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 23380005 - 23379874
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||||||||||| || |||||||||||  ||||| | |||||||||| | | | |||||||||| |||||||||| ||| ||| ||| | ||| |    
T  23380005 catttcattaataataatagtttcaatacaattgggtattttaaaataaacagcggaactagctagtaatgtgacttctcttgcgagagcataaacaacc 23379906  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  | |||| ||||| |||||||||||||    
T  23379905 tcgttggc-tgtcacctaataaactccacccta 23379874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 33611022 - 33611204
Alignment:
Q  95 aaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaa 194  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||  |||||||||| || | ||||||||||    
T  33611022 aaatatgcttatagcattttattaataataagaggttcaatacaatcgggtatatgaaaataaacaacgggaccagctagtaacatggcatctcctgcaa 33611121  T
Q  195 gaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    |||||||| ||| || |||| |||||||||||||||||||||||||| | ||  ||||||||||||| || ||||||||||||    
T  33611122 gaacatgaacaaccctgtttgcttgtcgcctaacaaactccaccctagagttggtaaagaaagaactgaacagagaccgacat 33611204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 276
Target Start/End: Original strand, 48100725 - 48100910
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | ||| ||||| |||||||||||||  |||||||||||||| |||   |||||||||||| ||| || |||| ||||||  |||||||    
T  48100725 aaagaaatatgcttatagcatttcattaataataagatattcaatacaatcagatatactaaaataaacaacgggactaactagaaacgtggattctcct 48100824  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgaca 276  Q
    ||||| |||||||||| | | ||| ||||||||||| |||||||||||||| | ||  |||| ||||| || |||||||| |||||    
T  48100825 gcaagcacatgagcaaccacatttgcttgtcgcctagcaaactccaccctagagttggtaaaaaaagagctgaatagagatcgaca 48100910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 13014966 - 13015096
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| ||||||| || |||||||||||  ||||| | |||||||||||||||| ||||||||||||||  ||||| ||||||| ||||||||| |    
T  13014966 catttcattgataataatagtttcaatacaattgggtatctcaaaataaacaacaggactagctagtaacgtggattctcttgcaagagcatgagcaacc 13015065  T
Q  209 ccgtttacttgtcgcctaacaaactccaccc 239  Q
     ||||  |||||||||||||||||| |||||    
T  13015066 tcgttggcttgtcgcctaacaaactacaccc 13015096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 15633366 - 15633236
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| ||||||| || |||||||||||  ||||| | ||| |||||||| ||| |||||||||||||| |||||| |||||||  |||||||| |    
T  15633366 catttcattgataataatagtttcaatacaattgggtatttcaaagtaaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaacc 15633267  T
Q  209 ccgtttacttgtcgcctaacaaactccaccc 239  Q
     | ||  ||||||||||||||||||||||||    
T  15633266 tcattggcttgtcgcctaacaaactccaccc 15633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 11343247 - 11343102
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | ||| ||||| ||| |||||||| | ||||||| | |  ||||| |||||||||||| | ||| |||| || |||||| || ||| |    
T  11343247 aaagaaatatgtttatagcatttcattgataataagtgtttcaatatattagggtatatgaaaataaacagcgggactagcgagcaacgtggctactctt 11343148  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactcca 236  Q
    |||||  |||||||||  ||||||| ||||||||||||||||||||    
T  11343147 gcaagggcatgagcaactccgtttatttgtcgcctaacaaactcca 11343102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 44435604 - 44435440
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||| || | ||| | |||||||| ||| | ||||| ||||||| | |||||||||  |    
T  44435604 gaaatatgattataacattttattaataataagagattcaatacattcggatatattaaaataaataacggaattagatagtaacataacttctccttta 44435505  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaaga 258  Q
     || |||| ||||   |||| | || ||| |||||||||| || |||||| || |||||||||||    
T  44435504 tgagcatgtgcaacttcgttgatttatcgtctaacaaacttcatcctaaagttgataaagaaaga 44435440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 3896602 - 3896475
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| |||||||||||| ||||| | |||||||||  | ||| ||||||   ||||| | |||| ||||||  ||||||||| |    
T  3896602 catttcattaataataagagtttcaatacaatcgggtatatcaaaataaacggcgggactagctaaagacgtggcctctcttgcaagtgcatgagcaacc 3896503  T
Q  209 ccgtttacttgtcgcctaacaaactcca 236  Q
     ||||  |||||||||||||||||||||    
T  3896502 acgttggcttgtcgcctaacaaactcca 3896475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 48770264 - 48770117
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| |||||||||||||| ||||||||| || ||||| ||||||||||     ||| ||||| |||| ||| ||||||||||     
T  48770264 gaaatatgcttatagcatttcattaataataagagtttcaatacattcgggtatatgaaaataaatggtgggactagcttgtaatgtggcttctcctgcg 48770165  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||||||||||| | | ||  ||| ||||| || |||||||||||||    
T  48770164 agaacatgagcaacctcattagcttctcgccgaataaactccacccta 48770117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 30502643 - 30502514
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| |||||||||||| ||||| | |||||||||  | ||| ||||||   ||||| | |||| |||||||  |||||||| |    
T  30502643 catttcattaataataagagtttcaatacaatcgggtatatcaaaataaactgcgggactagctaaggacgtggcctctcttgcaagagtatgagcaacc 30502544  T
Q  209 ccgtttacttgtcgcctaacaaactccacc 238  Q
     |||| ||||||||  ||||||||||||||    
T  30502543 gcgttgacttgtcgagtaacaaactccacc 30502514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 17238750 - 17238831
Alignment:
Q  183 cttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
    |||||| ||||||  ||||||||| | ||||  |||||||||||||||||||||||||| | |||  |||||||||||||||    
T  17238750 cttctcttgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagaactaaa 17238831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 24226210 - 24226342
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| || |||||||   ||||| | | |||||||  | ||| ||||||   ||||| | |||| ||||||| ||||||||| |    
T  24226210 catttcattaataataagagtttaaatacaagtgggtatatcataataaacgtcgggactagctaaagacgtggcctctcgtgcaagagcatgagcaacc 24226309  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  24226310 gcgttggcttgtcgcctaacaaactccacccta 24226342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 32480352 - 32480220
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| |||||||||||   |||| | |||||||||  | ||| ||||||   ||||| | || | |||||||  |||||||| |    
T  32480352 catttcattaataataagagtttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagtatgagcaacc 32480253  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  32480252 acgttggcttgtcgcctaacaaactccacccta 32480220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 3205202 - 3205281
Alignment:
Q  177 acgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaa 256  Q
    ||||| |||||| ||||||| ||||||||| | ||||   |||||||||||||||||||||| |||| |||  |||||||    
T  3205202 acgtggcttctcttgcaagagcatgagcaaccacgttgggttgtcgcctaacaaactccaccataaagttagaaaagaaa 3205281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 8118878 - 8118934
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||| ||||||| ||||||| | | ||||  ||||||||||||||||||||||||||    
T  8118878 tctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaaactccacccta 8118934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 47081731 - 47081787
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||| ||||||| ||||||| | | ||||  ||||||||||||||||||||||||||    
T  47081731 tctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaaactccacccta 47081787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 110 - 277
Target Start/End: Complemental strand, 44613 - 44445
Alignment:
Q  110 attttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttc-tcctgcaagaacatgagcaaac 208  Q
    |||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||  ||| ||| |  |||||||| |||||  | |    
T  44613 atttcattaataataagaggttcaatacaatcgggtatattaaaataaacaacaggattagctagtaatatgatttctttttgcaagaatatgagtgatc 44514  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    |||| | |||||||||||||||||| || |||| ||||  ||||||||||||| || ||||| ||||||    
T  44513 ccgtgtgcttgtcgcctaacaaactacatcctagaattggtaaagaaagaactgaaaagagatcgacat 44445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 18357260 - 18357095
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| || ||||||||||| ||||||| | || ||||| | |||||||||||| | |||||||||||||||| |||||||||||    
T  18357260 gaaatatgcttatagcatttcatgaataataagagattcaatatattcgggtatatcaaaataaacaacggaattagctagtaacgtggcttctcctgca 18357161  T
Q  194 agaacatgagcaaacccgttt-acttgtcgcctaacaaactccaccctaaaattaataaagaaaga 258  Q
    ||| ||||||||| |||||||  ||| || ||||||||||||||||||| | ||  ||||||||||    
T  18357160 agagcatgagcaatcccgtttggcttatcacctaacaaactccaccctagagttggtaaagaaaga 18357095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 49499561 - 49499415
Alignment:
Q  95 aaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaa 194  Q
    ||||||| | ||| ||||| |||||||||||||| |||||||||||| | ||||| |||||||| |||  || ||||||| |||||| |||||| |||||    
T  49499561 aaatatgtttatagcatttcattaataataagagattcaatacaatcggatatgttaaaataaataacgagactagctagaaacgtggcttctcttgcaa 49499462  T
Q  195 gaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||||||||||  | | ||| ||||||||||| ||||||||||||||    
T  49499461 gaacatgagcagccacatttgcttgtcgcctagcaaactccacccta 49499415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 16739433 - 16739563
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| ||||||| || |||||||||||  ||||| | |||||||||||| ||| |||||||||||||| |||||| ||||||| ||| ||||| |    
T  16739433 catttcattgataataatagtttcaatacaattgggtatctcaaaataaacaacgggactagctagtaacgtggcttctcttgcaagagcattagcaatc 16739532  T
Q  209 ccgtttacttgtcgcctaacaaactccaccc 239  Q
     ||||   |||||||||||||||||||||||    
T  16739533 tcgttggtttgtcgcctaacaaactccaccc 16739563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 29372955 - 29373080
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| ||||||||| || ||||  | |||||||||||| ||| ||||||||||||||||||||| || |||| |||| |||| |    
T  29372955 catttcattgataataagagtttcaatacattcgggtaaattaaaataaacaaccggactagctagtaacgtgacttctcttgaaagagcatgggcaacc 29373054  T
Q  209 ccgtttacttgtcgcctaacaaactc 234  Q
     ||||   ||||||||||||||||||    
T  29373055 tcgttggtttgtcgcctaacaaactc 29373080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 36144877 - 36144766
Alignment:
Q  95 aaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaa 194  Q
    ||||||| | ||| ||||| |||||||| |||||||||||||||||| ||||| |||||||||| |   ||| ||| ||||||| || | |||| |||||    
T  36144877 aaatatgcttatagcatttcattaataacaagaggttcaatacaatcgggtatatgaaaataaatagtgggactagttagtaacatggcctctcgtgcaa 36144778  T
Q  195 gaacatgagcaa 206  Q
    ||||||||||||    
T  36144777 gaacatgagcaa 36144766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 6006038 - 6006170
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||  | ||| ||||||   ||||| |||| | ||||||| |||||| || |    
T  6006038 catttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcttcccttgcaagagcatgagaaacc 6006137  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  6006138 acgttggcttgtcgcctaacaaactccacccta 6006170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 18342787 - 18342639
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| || ||||||||||| ||  ||||| ||  |||| | |||||||||||| | | |||||||||||||  ||||| |||||    
T  18342787 gaaatatgcttatagcatttcatgaataataagagattttatacattcgagtatattaaaataaacaacggaactagctagtaacgtagcttcttctgca 18342688  T
Q  194 agaacatgagcaaacccgttt-acttgtcgcctaacaaactccacccta 241  Q
    | | ||||||||| |||||||  ||||||| |||||||||| |||||||    
T  18342687 atagcatgagcaatcccgtttggcttgtcgtctaacaaacttcacccta 18342639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 53437672 - 53437541
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| ||||||| ||||||  || | ||||||||| ||| || ||||||   | ||| |||||| ||||||| ||||||||| |    
T  53437672 catttcattaataataagagtttcaatataatcaga-atatcaaaataaactacacgactagctaaagatgtggcttctcttgcaagagcatgagcaatc 53437574  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     | || ||||||| |||||||||||||||||||    
T  53437573 gcattgacttgtctcctaacaaactccacccta 53437541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 38015066 - 38015194
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| ||||||||||| || ||| | | |||| ||| |  || ||| |||||||||||| |||| ||||||  ||| ||||| |    
T  38015066 catttcattgataataagagattcaatacaatgag-tatatcataatagacagcgagactagttagtaacgtgacatctcttgcaagtgcataagcaacc 38015164  T
Q  209 ccgtttacttgtcgcctaacaaactccacc 238  Q
    |||||  |||||||||||||||||||||||    
T  38015165 ccgttagcttgtcgcctaacaaactccacc 38015194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 53394971 - 53394840
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| |||||||||||||| ||||||| ||||||  || | |||||||||  || || ||||||   ||||| |||||| ||||||| ||||||||| |    
T  53394971 catttcattaataataagagtttcaatataatcaga-atatcaaaataaactgcacgactagctaaagacgtggcttctcttgcaagagcatgagcaacc 53394873  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     | || ||||||| ||||| |||||||||||||    
T  53394872 gcattcacttgtctcctaaaaaactccacccta 53394840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 275
Target Start/End: Complemental strand, 31228375 - 31228209
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||    ||| | |||||||||  | ||||||||||   ||||| | ||   ||||||| ||||||||| |    
T  31228375 catttcatttataataagagtttcaatacaattgaatatattaaaataaactgcgggattagctaaagacgtggcctccattgcaagagcatgagcaacc 31228276  T
Q  209 ccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgac 275  Q
     ||||  |||||||||||||||||||||||||| | |||  |||||||| ||| |||| ||| ||||    
T  31228275 acgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaataaagaacgac 31228209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 31661046 - 31661108
Alignment:
Q  179 gtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||| |||| ||||||| ||||||||| | ||||  ||||||||||||||||||||||||||    
T  31661046 gtgacctctcgtgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccacccta 31661108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 35906922 - 35907020
Alignment:
Q  96 aatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaa 194  Q
    |||||| | ||| ||||| ||| ||||| | || |||||||||||  ||||| | |||||||||| | ||| |||||||||||||| |||||| |||||    
T  35906922 aatatgcttatagcatttcattgataatgatagtttcaatacaattgggtatctcaaaataaacagcgggactagctagtaacgtggcttctcttgcaa 35907020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 31973559 - 31973506
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacc 238  Q
    |||| ||||||| ||||||||| | ||||  |||||||||||||||||||||||    
T  31973559 tctcgtgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccacc 31973506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 8566075 - 8566019
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||| ||||||| ||||||| | | ||||  ||||||||||||||||||||||||||    
T  8566075 tctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaaactccacccta 8566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 31935301 - 31935245
Alignment:
Q  185 tctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||| ||||||| |||||||||   ||||  ||||||||||||||||||||||||||    
T  31935301 tctcgtgcaagagcatgagcaactgcgttggcttgtcgcctaacaaactccacccta 31935245  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 23622658 - 23622543
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||| | ||| ||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||  || ||||||| |||||| ||||||||    
T  23622658 aaagaaatatgcttatagcatttcattaataataagagattcaatacaatcgggtatgttaaaataaacaacgagactagctagaaacgtggcttctcct 23622559  T
Q  191 gcaagaacatgagcaa 206  Q
    ||||| ||||||||||    
T  23622558 gcaagcacatgagcaa 23622543  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 2157780 - 2157910
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| ||||||| || |||||||||||  ||||| | |||||||||||| ||| |||||||||||||| |||||| ||||||| ||| ||||| |    
T  2157780 catttcattgataataatagtttcaatacaattgggtatctcaaaataaacaacgggactagctagtaacgtggcttctcttgcaagagcataagcaatc 2157879  T
Q  209 ccgtttacttgtcgcctaacaaactccaccc 239  Q
     ||||  ||||||||||||||||||||||||    
T  2157880 tcgttggcttgtcgcctaacaaactccaccc 2157910  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 29955449 - 29955594
Alignment:
Q  91 aaagaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcct 190  Q
    ||||||||||||| ||| ||||| ||||||||||| || |||||||||||||||||||| |||||||||||   || ||| ||| ||||||||||||| |    
T  29955449 aaagaaatatgattataacatttcattaataataaaagattcaatacaatcaggtatgttaaaataaacaatgagactagttagaaacgtgacttctctt 29955548  T
Q  191 gcaagaacatgagcaaacccgtttacttgtcgcctaacaaactcca 236  Q
     |||| |||||||||| |   |||  |||||||||| |||||||||    
T  29955549 acaagcacatgagcaaccatatttgtttgtcgcctagcaaactcca 29955594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 19237811 - 19237635
Alignment:
Q  95 aaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaa 194  Q
    ||||||| | ||| ||||| |||||||||||||||||||      || | ||| ||||||||||||   | ||||||||||| |||||| |||| |||||    
T  19237811 aaatatgcttataacatttcattaataataagaggttca------tcggatatatgaaaataaacagtggaattagctagtagcgtgacctctcttgcaa 19237718  T
Q  195 gaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaatagagaccgacat 277  Q
    |||||||||||| | | ||| |||||||||||| ||||||||||||| | ||  ||||||||||||  || ||||| ||||||    
T  19237717 gaacatgagcaacctcatttgcttgtcgcctaataaactccaccctagagttggtaaagaaagaaccgaagagagatcgacat 19237635  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 19741533 - 19741665
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| ||||||||||  | |||| | |  ||||||| | ||| |||||||||| ||| |||||| ||||||| ||||||||| |    
T  19741533 catttcattgataataagagtttcaatacaaatatgtatttcatgataaacagcgggactagctagtaatgtggcttctcttgcaagagcatgagcaacc 19741632  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
    |||||  |||||||||||||||| | |||||||    
T  19741633 ccgttagcttgtcgcctaacaaatttcacccta 19741665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 36045069 - 36044930
Alignment:
Q  94 gaaatatgatcataccattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgca 193  Q
    |||||||| | ||| ||||| |||||||||||||| ||||||||| || || || ||||||||||     ||| |||||||||| ||| |||||||| ||    
T  36045069 gaaatatgcttatagcatttcattaataataagagattcaatacattcgggcatatgaaaataaatggtgggactagctagtaatgtggcttctcctaca 36044970  T
Q  194 agaacatgagcaaacccgtttacttgtcgcctaacaaact 233  Q
    |||| |||||||| | | ||  ||||||||||||||||||    
T  36044969 agaatatgagcaacctcattggcttgtcgcctaacaaact 36044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 22292516 - 22292384
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaac 208  Q
    ||||| ||| |||||||||| |||||||||||  ||||| | |||||||||  | ||| ||||||   ||||| | || | ||||||| ||||||||| |    
T  22292516 catttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaacc 22292417  T
Q  209 ccgtttacttgtcgcctaacaaactccacccta 241  Q
     ||||  ||||||||||||||||||||||||||    
T  22292416 acgttggcttgtcgcctaacaaactccacccta 22292384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 13948800 - 13948916
Alignment:
Q  117 taataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaagaacatgagcaaacccgtttac 216  Q
    ||||||| | || |||||||||||  ||||| |||||||||||||| | | ||||||| |||||||| |||| ||| |||  ||||| ||   | ||| |    
T  13948800 taataatcaaagtttcaatacaatagggtatatgaaaataaacaacggaactagctagaaacgtgacctctcatgcgagagtatgagaaactacatttgc 13948899  T
Q  217 ttgtcgcctaacaaact 233  Q
    ||||| |||||||||||    
T  13948900 ttgtctcctaacaaact 13948916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 28246326 - 28246262
Alignment:
Q  177 acgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccacccta 241  Q
    ||||||| |||| ||||||| ||||| ||| | |||| |||||||| ||||||||||||| ||||    
T  28246326 acgtgacctctcttgcaagagcatgaacaaccacgttgacttgtcgtctaacaaactccatccta 28246262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 40299949 - 40299909
Alignment:
Q  199 atgagcaaacccgtttacttgtcgcctaacaaactccaccc 239  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  40299949 atgagcaaccacgtttgcttgtcgcctaacaaactccaccc 40299909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 1939 - 2025
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaag 195  Q
    ||||| ||||||||||| |||||||||||| |  ||||| | |||||||||||   || |||||||||||||||||||| |||||||    
T  1939 catttcattaataataacaggttcaatacatttgggtatattaaaataaacaaagagactagctagtaacgtgacttcttctgcaag 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 9595 - 9681
Alignment:
Q  109 cattttattaataataagaggttcaatacaatcaggtatgtgaaaataaacaacaggattagctagtaacgtgacttctcctgcaag 195  Q
    ||||| ||||||||||| |||||||||||| |  ||||| | |||||||||||   || |||||||||||||||||||| |||||||    
T  9595 catttcattaataataacaggttcaatacatttgggtatattaaaataaacaaagagactagctagtaacgtgacttcttctgcaag 9681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 191074 - 191162
Alignment:
Q  176 aacgtgacttctcctgcaagaacatgagcaaacccgtttacttgtcgcctaacaaactccaccctaaaattaataaagaaagaactaaa 264  Q
    |||||| ||| || ||||||  ||||||||| | ||||  |||||||||||||||||||||||||| | |||  |||||||||||||||    
T  191074 aacgtggcttttcttgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagaactaaa 191162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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