View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_low_10 (Length: 359)
Name: NF20501_low_10
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 27362787 - 27362443
Alignment:
| Q |
1 |
aaaaattagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttgtcattgaagcataaaaataaacatgagataaat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27362787 |
aaaaatgagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttgtcatttaagcataaaaataaacatgagataaat |
27362688 |
T |
|
| Q |
101 |
atttttcattgataaatagaaaggnnnnnnnnn-caagtgataaatatttgtcattggtacgtaaaataacacaaggctccgtcaattcaggaagtcatt |
199 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
27362687 |
atttttcattgataaatagaaaggaaaaaaaaaacaagggataaatatttgtcattggtacgtaaaata-cacaaggctccatcaattcaggaagtcatt |
27362589 |
T |
|
| Q |
200 |
cagcttagtcagagaaattggctctttgcaaaattgtgatcttatcaacaggaatcacttgagatttaatagcaagaagatcaacttcagatcagctatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27362588 |
cagcttagtcagagaaattggctctttgcaaaattgtgatcttatcagcaggaatcacttgagatttaatagcaagaagatcaacttcagatcagctatt |
27362489 |
T |
|
| Q |
300 |
aatctcatcatcttaggaactgccatgataggtaataactccaagt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27362488 |
aatctcatcatcttaggaactgccatgataggtaataactccaagt |
27362443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 45400943 - 45401292
Alignment:
| Q |
1 |
aaaaattagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttgtcattgaagcataaaaataaacatgagataa-- |
98 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45400943 |
aaaaatgagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttgtcattgaagcataaaaataaacatgagataata |
45401042 |
T |
|
| Q |
99 |
-atatttttcattgataaatagaaaggnnnnnnnnncaagtgataaatatttgtcattggtacgtaaaataacacaaggctccgtcaattcaggaagtca |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45401043 |
aatatttttcattgataaatagaaaggaaaaaaaaacaagggataaatatttgtcattggtacgtaaaataacacaaggctccatcaattcaggaagtca |
45401142 |
T |
|
| Q |
198 |
ttcagcttagtcagagaaattggctctttgcaaaattgtgatcttatcaacaggaatcacttgagatttaatagcaagaagatcaacttcagatcag--c |
295 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45401143 |
ttcagcttagtcagagaaattggctctttgcaaaattgtgatcttatcaacaggaatcacttgagatttaatagcaaggagatcaacttcagatcagtta |
45401242 |
T |
|
| Q |
296 |
tattaatctcatcatcttaggaactgccatgataggtaataactccaagt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45401243 |
tattaatctcatcatcttaggaactgccatgataggtaataactccaagt |
45401292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 14002465 - 14002390
Alignment:
| Q |
260 |
gagatttaatagcaagaagatcaacttcagatcagctattaatctcatcatcttaggaactgccatgataggtaat |
335 |
Q |
| |
|
||||||||| | ||| |||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
14002465 |
gagatttaacaacaaaaagatcaatgtcagatcagctatcaatctcattatcttaggaactgctatgataggtaat |
14002390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 8484237 - 8484201
Alignment:
| Q |
86 |
aaacatgagataaatatttttcattgataaatagaaa |
122 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||| |
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| T |
8484237 |
aaacatgagataaatatttgtcattgctaaatagaaa |
8484201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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