View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_low_12 (Length: 348)
Name: NF20501_low_12
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 241205 - 241528
Alignment:
| Q |
17 |
atagttgagcttctttttcatggaaaaaaccaaaattgaagctagaattccatacaaatacccgaaaattgtaaaagcaactatgcatcaattattttac |
116 |
Q |
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| T |
241205 |
atagttgagcttctttttcatgaaaaaaaccaaaatcgaagccagaattccatacaaatacccgaaaattataaaagcaactatgcatcaattatttaac |
241304 |
T |
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| Q |
117 |
acatgcgtctaatgatttgnnnnnnnaaggaataattacgattgaaaaatgatgtttatgattaatatttggtgtgcaatattgcaggaaatgtgtggac |
216 |
Q |
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| T |
241305 |
acatgcgtctaatgatttgtttttttaaggaataattacgattgaaaaatgatgtttatgattaatatttggtgtgcaatattgcaggaaatgtgtggac |
241404 |
T |
|
| Q |
217 |
agcaacaacacacattataacagtggtagttggggcaggggtgttggctctagcatgggccatggctcaactaggatggatagctggtatagccagtata |
316 |
Q |
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| T |
241405 |
agcaacaacacacattataacagtggtagttggggcaggggtgttggctctagcatgggccatggctcaactaggatggatagctggtatagccagtata |
241504 |
T |
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| Q |
317 |
ataatctttgcatgcatctctgct |
340 |
Q |
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| T |
241505 |
ataatctttgcatgcatctctgct |
241528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 30 - 337
Target Start/End: Complemental strand, 223953 - 223636
Alignment:
| Q |
30 |
tttttcatggaaaaa-accaaaattgaagctagaattccatacaaatacccgaaaattgtaaaagcaactatgcatcaattattttacacatgcgtctaa |
128 |
Q |
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| T |
223953 |
tttttcatggaaaaagaccaaaatt-aagccagaattccatacaaatacccgaaagttttaaaagcaactatgcatcaactatttaacacatccgtctaa |
223855 |
T |
|
| Q |
129 |
tgatttgnnnnnnn----------aaggaataattacgattgaaaaatgatgtttatgattaatatttggtgtgcaatattgcaggaaatgtgtggacag |
218 |
Q |
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| T |
223854 |
tgatgtgtgttactgtataaattcatttaataagtatgaatgaaaaaacatgtttatgattaatatttggtgcgcaatattgcagggaacgtgtggacgg |
223755 |
T |
|
| Q |
219 |
caacaacacacattataacagtggtagttggggcaggggtgttggctctagcatgggccatggctcaactaggatggatagctggtatagccagtataat |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
223754 |
caacaacacacatcataacagtggtagttggggcaggggtgttggctctagcatgggctatggctcaactaggatggatagctggtatagccagtatact |
223655 |
T |
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| Q |
319 |
aatctttgcatgcatctct |
337 |
Q |
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|| |||||||| ||||||| |
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| T |
223654 |
aacctttgcatccatctct |
223636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 12031588 - 12031459
Alignment:
| Q |
201 |
caggaaatgtgtggacagcaacaacacacattataacagtggtagttggggcaggggtgttggctctagcatgggccatggctcaactaggatggatagc |
300 |
Q |
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||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| |||||||| ||||||| ||||| || ||| ||||||||||||| |
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| T |
12031588 |
caggaaatgtgtggacagctacaacacacataataacggtggtaattggtgcaggagtgttggccctagcatatgccattgcacaattaggatggatagc |
12031489 |
T |
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| Q |
301 |
tggtatagccagtataataatctttgcatg |
330 |
Q |
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| T |
12031488 |
tggtattgcaagtatattgatcttttcatg |
12031459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 51528415 - 51528520
Alignment:
| Q |
198 |
ttgcaggaaatgtgtggacagcaacaacacacattataacagtggtagttggggcaggggtgttggctctagcatgggccatggctcaactaggatggat |
297 |
Q |
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||||||| || |||| ||| |||||||||||||| ||||||||||| || || ||||| |||||||||||||||||||| || |||||||||||||||| |
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| T |
51528415 |
ttgcagggaacgtgttgacggcaacaacacacataataacagtggtggtgggtgcaggagtgttggctctagcatgggcaatttctcaactaggatggat |
51528514 |
T |
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| Q |
298 |
agctgg |
303 |
Q |
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|||||| |
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| T |
51528515 |
agctgg |
51528520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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