View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_low_13 (Length: 331)
Name: NF20501_low_13
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 36601259 - 36601573
Alignment:
| Q |
19 |
ttttgcctaaatcatataagatatacattatttaggaaaatgatttacccatgtcacgacacttgtctgcatacgatccaaagccttacgcccagttatg |
118 |
Q |
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| T |
36601259 |
ttttgcctaaatcatataagatatacattatttaggaaaatgatttacccatgtcacgacacttgtctgcatacgatccaaagccttacgcccagttatg |
36601358 |
T |
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| Q |
119 |
atctccaaaagtagaacaccgaaagagtaaacatcagttttctcatccactatgccatgcatgcaatattcaggagataaatatctgtgaaacaagtcat |
218 |
Q |
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| T |
36601359 |
atctccaaaagtagaacgccgaaagagtaaacatcagttttctcatccactatgccatgcatgcaatattcaggagataaatatctgtgaaacaagtcat |
36601458 |
T |
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| Q |
219 |
ttgtggaatattaaatcaagagaatcg----aaaagaaaagaaaaactatggcattagtatttcatgtttgcatacccgaatgtgccttcaaatgtggac |
314 |
Q |
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| T |
36601459 |
ttgtggaatattaaatcaagagaatcggaaaaaaaaaaaaaaaaaactatggcattagtatttcatgtttgcatacccgaatgtgccttcaaatgtggac |
36601558 |
T |
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| Q |
315 |
atattatggtgagtc |
329 |
Q |
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| T |
36601559 |
atattatggtgagtc |
36601573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 47016983 - 47016882
Alignment:
| Q |
93 |
gatccaaagccttacgcccagttatgatctccaaaagtagaacaccgaaagagtaaacatcagttttctcatccactatgccatgcatgcaatattcagg |
192 |
Q |
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||||||| ||| |||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
47016983 |
gatccaatgccctacggccagttataatctccaaaagtaggacaccaaaagaataaacatcagttttctcgtcgactatgccatgcataagatattcagg |
47016884 |
T |
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| Q |
193 |
ag |
194 |
Q |
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|| |
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| T |
47016883 |
ag |
47016882 |
T |
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