View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_low_19 (Length: 229)
Name: NF20501_low_19
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 11933728 - 11933538
Alignment:
| Q |
22 |
ttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgc |
121 |
Q |
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| T |
11933728 |
ttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgc |
11933629 |
T |
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| Q |
122 |
cccagtttcaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagct |
212 |
Q |
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| T |
11933628 |
cccagtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagct |
11933538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 11946949 - 11946759
Alignment:
| Q |
22 |
ttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgc |
121 |
Q |
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| T |
11946949 |
ttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgc |
11946850 |
T |
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| Q |
122 |
cccagtttcaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagct |
212 |
Q |
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| T |
11946849 |
cccagtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagct |
11946759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 11917553 - 11917377
Alignment:
| Q |
26 |
atgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgcccca |
125 |
Q |
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| T |
11917553 |
atgtcctccaacaccaacagtcggacaaacgccggccgcaaaagcatgagttttacttttctcagcaattctatagtaaacttcaccaagtgttgcacca |
11917454 |
T |
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| Q |
126 |
gtttcaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatgg |
202 |
Q |
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| T |
11917453 |
ctttgaatccaagctgtttcagtgtttatgtcaatttcaattgatctaagattgaacatgtctaagatgaaaaatgg |
11917377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 11821198 - 11821110
Alignment:
| Q |
24 |
aaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
112 |
Q |
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| T |
11821198 |
aaatgaccaccaacaccgacagttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
11821110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 38129466 - 38129405
Alignment:
| Q |
24 |
aaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttactttt |
85 |
Q |
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||||| || ||||||||||| || |||||||||||||| ||||| ||||||||||||||||| |
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| T |
38129466 |
aaatggccaccaacaccaacagttggacaaacgccggcaggaaagccatgaactttactttt |
38129405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 38090679 - 38090627
Alignment:
| Q |
24 |
aaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaac |
76 |
Q |
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|||||||| ||||||||||| ||||||||||| || || |||||||||||||| |
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| T |
38090679 |
aaatgtccaccaacaccaacagtaggacaaaccccagctggaaaaccatgaac |
38090627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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