View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_low_20 (Length: 220)
Name: NF20501_low_20
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 27362838 - 27363022
Alignment:
| Q |
24 |
atgtagctttaaaaaatactttccctctatttttatatttataagtcacaaatacttgtctcatannnnnnnnnccgtatcaatgataaatatatatctc |
123 |
Q |
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| T |
27362838 |
atgtagctttaaaaaatactttccctctatttttatatttataagtcacaaatacttgtctcgtatttttttttacatatcaatgataaatatatatctc |
27362937 |
T |
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| Q |
124 |
gtgtttattctattcatcaacgagaaccatttgtctcgtgaattttgtaccaatgatgaatttttgtgttttgctttttaatatt |
208 |
Q |
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| T |
27362938 |
gtgtttattctattcatcaacgagaatcatttgtctcgtgaattttgtaccaatgatgaatttttgtgttttgctttttaatatt |
27363022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 45400892 - 45400786
Alignment:
| Q |
24 |
atgtagctttaaaaaatactttccctctatttttatatttataagtcacaaatacttgtctcatannnnnnnnnccgtatcaatgataaatatatatctc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |
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| T |
45400892 |
atgtagctttaaaaaatactttccctctatttttatatttataagtcacaaatatttgtctcgtatttttttta-cgtatcaatgataaatatatatctc |
45400794 |
T |
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| Q |
124 |
gtgtttat |
131 |
Q |
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||| |||| |
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| T |
45400793 |
gtgcttat |
45400786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 19724623 - 19724522
Alignment:
| Q |
101 |
tatcaatgataaatatatatctcgtgtttattctattcatcaacgagaaccatttgtctcgtgaattttgtaccaatgatgaatttttgtgttttgcttt |
200 |
Q |
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| T |
19724623 |
tatcaacgacaaatatttttcccgtgcttattctattcatcaatgagagccatttgtctcgtgaattttgtactaaggatgaatttttgtggtttgcttt |
19724524 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
19724523 |
tt |
19724522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 22283021 - 22282933
Alignment:
| Q |
100 |
gtatcaatgataaatatatatctcgtgtttattctattcatcaacgagaaccatttgtctcgtgaattttgtaccaatgatgaatttttgtgt |
192 |
Q |
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|||| |||||||||||| |||| ||||||| |||||||| |||| || ||| ||||||| | | ||||||||||||||||||| ||||||| |
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| T |
22283021 |
gtataaatgataaatatttatcccgtgttt-ttctattcgtcaatgaaaactatttgtcccat---ttttgtaccaatgatgaatatttgtgt |
22282933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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