View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20501_low_5 (Length: 557)
Name: NF20501_low_5
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_5 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 2624444 - 2623898
Alignment:
| Q |
1 |
tagagaaaagataaggcttttatatttttgaattacctaatgaacacaccatgagtggataagacactaattattacctaattagactaagaatttcaaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624444 |
tagagaaaagataaggcttatatatttttgaattacctaatgaacacaccatgagtggataagacactaattattacctaattagactaagaatttcaaa |
2624345 |
T |
|
| Q |
101 |
attcagca---tctgaaacagaaaacacgtcaaacaaattagttgagagttatacctgggaggaaagaagcatccatcctcttttgtgaccaagttaaac |
197 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2624344 |
attcagcagcatctgaaacagaaaacacatcaaacaaattagttgagagttatacctgggaggaaagaagcatccatcctcttttgtgaccaagttaagc |
2624245 |
T |
|
| Q |
198 |
tgcagt-agcaagatcaaaataagaacactgcatataatcttcattatagcaacgtagtgaaaaaaggtactgttaaattaatgctatatgactatgaaa |
296 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624244 |
tgcagttagcaagatcaaaataagaacactgcatataatcttcattatagcaacgtagtgaaaaaaggtactgttaaattaatgctatatgactatgaaa |
2624145 |
T |
|
| Q |
297 |
cactcgtgacatttattcaatggaattagactatgatacacggacacagaacatcgacacatcgatactggtcataatttgctaaatatgaagtatttga |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624144 |
cactcgtgacatttattcaatggaattagactatgatacacggacacagaacatcgacacatcgatactggtcataatttgctaaatatgaagtatttga |
2624045 |
T |
|
| Q |
397 |
atgggtcagttagtgtcactgtcggttactgacacatgtcagaccccaaactcaccttcaatctgattgttagcattacatagcaattggatcataaact |
496 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
2624044 |
atgggtcagttagtgtcactgtcgggtactgacacatgtcagaccccaaactcaccttcaatctgagtgttagcgttacatagaaattggatcataaact |
2623945 |
T |
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| Q |
497 |
ggacagagtaatctccattgaatactttcttactaagatatgcaatg |
543 |
Q |
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| T |
2623944 |
ggacagagtaatctccattgaatactttcttactaaaatatgcaatg |
2623898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 21871956 - 21872033
Alignment:
| Q |
186 |
accaagttaaactgcagt-agcaagatcaaaataagaacactgcatataatcttcattatagcaacgtagtgaaaaaa |
262 |
Q |
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| T |
21871956 |
accaaattaagctgcagttagcaagatcaaaataagaacacaacatataatcttcattataacattgtagtgaaaaaa |
21872033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 16517998 - 16518049
Alignment:
| Q |
150 |
tacctgggaggaaagaagcatccatcctcttttgtgaccaagttaaactgca |
201 |
Q |
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| T |
16517998 |
tacctgggaggaaagaagcatccatacgcttttgtgaccaagttaatctgca |
16518049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 16526524 - 16526576
Alignment:
| Q |
149 |
atacctgggaggaaagaagcatccatcctcttttgtgaccaagttaaactgca |
201 |
Q |
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| T |
16526524 |
atacccggtaggaaagaagcatccatacgcttttgtgaccaagttaatctgca |
16526576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 16586625 - 16586669
Alignment:
| Q |
151 |
acctgggaggaaagaagcatccatcctcttttgtgaccaagttaa |
195 |
Q |
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| T |
16586625 |
acctggtaggaaagaagcatccatacgcttttgtgaccaagttaa |
16586669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 1026 - 974
Alignment:
| Q |
149 |
atacctgggaggaaagaagcatccatcctcttttgtgaccaagttaaactgca |
201 |
Q |
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| T |
1026 |
ataccaggtaggaaagaagcatccatacgcttttgtgaccaagttaatctgca |
974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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