View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20501_low_6 (Length: 476)

Name: NF20501_low_6
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20501_low_6
NF20501_low_6
[»] chr4 (3 HSPs)
chr4 (14-466)||(184124-184576)
chr4 (324-465)||(590090-590231)
chr4 (148-209)||(3014935-3015000)
[»] chr1 (3 HSPs)
chr1 (289-464)||(44607271-44607446)
chr1 (289-436)||(44628805-44628952)
chr1 (207-243)||(44628992-44629028)


Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Complemental strand, 184576 - 184124
Alignment:
Q  14 tcatcagcagattctttccctttctcttccttaatgttgtgggtgtaaaccttaaactgtcacttgcaagttccctatattcaggggtgactttgacatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  184576 tcatcagcagattctttccctttctcttccttaatgttgtgggtgtaaaccttaaactgtcacttgcaagttccctatattcaggggtgactttgacatc 184477  T
Q  114 aaacgtagtcaatatagtagaattctcctggacgttcttttcaagcattgcacttgcactggccttcttcacatctttcttatgtacacgacctatagcg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||     
T  184476 aaacgtagtcaatatagtagaattctcctggacgttcttttcaagcattgctcttgcactggccttcttcacatctttcttatgtacatgatctatagca 184377  T
Q  214 ctgacaggaatattcacttctggagttttcttaaaattcaatactcctcctttcaataatgagccaggcattgtagcctgaacataaatgctctcgccac 313  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  184376 ctgacaggaatattaacttctggagttttcttaaaattcattactcctcttttcaataatgagccaggtattgtagcctgaacataaatgctctcgccac 184277  T
Q  314 tcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagcc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  184276 tcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggcttcaccacatataaactagagcc 184177  T
Q  414 agcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctg 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  184176 agcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctg 184124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 324 - 465
Target Start/End: Original strand, 590090 - 590231
Alignment:
Q  324 cctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagca 423  Q
    |||||||||||| |||||||| ||||||| |||| ||| ||||| |||||| |||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  590090 cctgctcaagactgactccacatcttccatggccacttgtttaacatattccaaatcatcatcaggcttcaccaaatataaactagcaccagcaatagca 590189  T
Q  424 tgttcaagtccctacaataacaggaaatcttatcaaatctct 465  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  590190 tgttcaagtccctgcaataacaggaaatcttatcaaatctct 590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 3015000 - 3014935
Alignment:
Q  148 ttcttttcaagcattgcact----tgcactggccttcttcacatctttcttatgtacacgacctat 209  Q
    ||||||||||||||||||||    |||||||||||||| |||||| |||||||||| | |||||||    
T  3015000 ttcttttcaagcattgcactggcttgcactggccttctccacatccttcttatgtataggacctat 3014935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 289 - 464
Target Start/End: Complemental strand, 44607446 - 44607271
Alignment:
Q  289 gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag 388  Q
    ||||| ||| ||| || ||| |||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||| |||||  |||||||||| ||    
T  44607446 gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagactgactccacgtcttccaaggctgcttttttaatatatttcaaatcatcattag 44607347  T
Q  389 gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctc 464  Q
    | |||||||||| |||||||| |||||||| ||| |||||||||||||  ||||||||||||||||||||||||||    
T  44607346 gcttcaccacatgtaaactagcgccagcaacagcgtgttcaagtccctgaaataacaggaaatcttatcaaatctc 44607271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 289 - 436
Target Start/End: Complemental strand, 44628952 - 44628805
Alignment:
Q  289 gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag 388  Q
    ||||| ||| ||| || ||| |||||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||    
T  44628952 gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagaccgactccacgtcttccaaagctgcttttttaatatattccaaatcatcatcag 44628853  T
Q  389 gtttcaccacatataaactagagccagcaatagcatgttcaagtccct 436  Q
    | || ||||||||||||||||  |||||||||||||||||||| ||||    
T  44628852 gctttaccacatataaactagctccagcaatagcatgttcaagcccct 44628805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 44629028 - 44628992
Alignment:
Q  207 tatagcgctgacaggaatattcacttctggagttttc 243  Q
    |||||| || |||||||||||||||||||||||||||    
T  44629028 tatagcactaacaggaatattcacttctggagttttc 44628992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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