View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20501_low_8 (Length: 393)
Name: NF20501_low_8
Description: NF20501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20501_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 184147 - 183769
Alignment:
| Q |
1 |
acaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataattcaataaagtacctgggcagtaatcttgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184147 |
acaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataattcaataaagtacctgggcagtaatcttgattc |
184048 |
T |
|
| Q |
101 |
ccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaaacacactaaataatagaatacagctcctc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184047 |
ccatcacagctttgatttctttgtcgtgtatatacgatccctgaaattagacaaccattacttagctggaaacacactaaataatagaatacagctcctc |
183948 |
T |
|
| Q |
201 |
tgtcgaagacccctcaagctcagactaaacgggagtttcccatcccttccaaattccaatgacagtaaaaatgaagacctctccatcatagtaatatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
183947 |
tgtcgaagacccctcaagctcagactaaacgggagtttcccatcccttccaaattccaatgacagtaaaaatgaagacttctccatcatagtaatatgaa |
183848 |
T |
|
| Q |
301 |
ctatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctcacagtcatgtcctatg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183847 |
ctatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctcacagtcatgtcctatg |
183769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 590320 - 590414
Alignment:
| Q |
77 |
gtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaa |
171 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
590320 |
gtacctgggcagtgatcttgacgcccatcacagctttgatttctttgtgatgcataaatgatccctgaaatttgagaaccattacttagctggaa |
590414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 590209 - 590277
Alignment:
| Q |
1 |
acaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataatt |
69 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
590209 |
acaggaaatcttatcaaatctctcattctctacacatttctaaacataaaaataaagaaaaacataatt |
590277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 44628693 - 44628551
Alignment:
| Q |
75 |
aagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaa-ac |
173 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44628693 |
aagtacctgggcagtgatcttgatgcccatagcagctttgatttctttgtgatggatatacgatccctgaaattagacaaccattacttagctggaagac |
44628594 |
T |
|
| Q |
174 |
acactaaataatagaatacagctcctctgtcgaagacccctca |
216 |
Q |
| |
|
| |||||||| | ||||||||||||| ||| ||| ||||||| |
|
|
| T |
44628593 |
atactaaatagcaaaatacagctcctccgtcaaaggcccctca |
44628551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 44607182 - 44607087
Alignment:
| Q |
75 |
aagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctgga |
170 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44607182 |
aagtacctgggcagtgatcttgatacccatagcagctttgatttctttgtgatggatatatgatccctgaaattagacaaccattacttagctgga |
44607087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 44607073 - 44607003
Alignment:
| Q |
293 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctca |
364 |
Q |
| |
|
|||||||||||||| |||||||||| | || || | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44607073 |
aatatgaactatgaacaactatact-gctaaaacttggttccttcctgttaagcataatgttaagaatctca |
44607003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44607292 - 44607247
Alignment:
| Q |
1 |
acaggaaatcttatcaaatctctgattctctacacattcataaaca |
46 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
44607292 |
acaggaaatcttatcaaatctcagattctctacacatttataaaca |
44607247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 44628539 - 44628487
Alignment:
| Q |
293 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaag |
345 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
44628539 |
aatatgagctatgaacaactatacttgctataactcggttccttcatgttaag |
44628487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University