View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_high_15 (Length: 219)
Name: NF20502_high_15
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 31396838 - 31396716
Alignment:
| Q |
2 |
aaaagttta-ctcttaatctattcgagcatttacattctgaagagcttaatcaaacaataccatatttgagaccaaccttactgatgtagtcataaccgg |
100 |
Q |
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| T |
31396838 |
aaaagtttatctcttaatctattcgagcatttacattctgaagagcttaatcaaacaattccaaatttgatgccaaacttactgatgtagccagaacagg |
31396739 |
T |
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| Q |
101 |
tactagttggaaccaatttaatt |
123 |
Q |
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| T |
31396738 |
tactagttggaactactttaatt |
31396716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 31381701 - 31381597
Alignment:
| Q |
20 |
tattcgagcatttacattctgaagagcttaatcaaacaataccatatttgagaccaaccttact-gatgtagtcataaccggtactagttggaaccaatt |
118 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||| |||||||||||||| ||||||||||| ||| |||| |
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| T |
31381701 |
tatttgagcatttacattctgaagaccttaatcaaacaacaccaaatttgagatcaaccttactagatgtagtcataacaggtactagttgtaacaaatt |
31381602 |
T |
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| Q |
119 |
taatt |
123 |
Q |
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||||| |
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| T |
31381601 |
taatt |
31381597 |
T |
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