View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20502_high_17 (Length: 206)

Name: NF20502_high_17

Description: NF20502

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20502_high_17

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 164; E-Value: 7e-88

Query Start/End: Original strand, 17 - 188

Target Start/End: Original strand, 13441389 - 13441560

Alignment:

Q	17	ttattctattatattctactcactattcacgtttctatatctccccgtgtgtgagtgcatgagttcaagttcgaccatactttcgtttttatacgtaaat	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13441389	ttattctattatattctattcactattcacgtttctatatctccccgtgtgtgagtgcatgagttcaagttcgaccatactttcgtttttatacgtaaat	13441488	T

Q	117	aatatacttattattcatattattttattccatctgcacgagagccacgaggagagtaagagaatacaagtt	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	13441489	aatatacttattattcatattattttattccatctgcacgagagccacgaggagagtaagagaacacaagtt	13441560	T

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Target: chr2; HSP #2

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 124 - 168

Target Start/End: Original strand, 13462694 - 13462738

Alignment:

Q	124	ttattattcatattattttattccatctgcacgagagccacgagg	168	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	13462694	ttattattgttattattttattctatctgcacgagacccacgagg	13462738	T

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