View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_high_3 (Length: 517)
Name: NF20502_high_3
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 3457113 - 3456617
Alignment:
| Q |
9 |
gagatgaagagtgattgtattgaagacatgatggacattgaagagttatcttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaaca |
108 |
Q |
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| T |
3457113 |
gagatggagagtgattgtattgaagacatgatggacattgaagagttatcttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaaca |
3457014 |
T |
|
| Q |
109 |
tagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatcttagaagaaccagctatagctgattttcaaagattaatggagcttacaaatta |
208 |
Q |
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| T |
3457013 |
tagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatcttagaagaaccagcaatagctgattttcaaagattaatggagcttacaaatta |
3456914 |
T |
|
| Q |
209 |
tacagataaagggtcatctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatctt |
308 |
Q |
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| T |
3456913 |
tacagataaagggtcatctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatctt |
3456814 |
T |
|
| Q |
309 |
agcaaacaaaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagttatggcggagacaaacgtccgg |
408 |
Q |
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| T |
3456813 |
agcaaacaaaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagttatggcggagacaaacgtccgg |
3456714 |
T |
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| Q |
409 |
tttcaatattggacgatgcttactatacttggcaagatctaccggcggcgataaggaaaagtaatgttgttgttcaaaacaagagaattgaaattga |
505 |
Q |
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| T |
3456713 |
tttcaatattggacgatgcttactatacttggcaagatctaccggcggcgataaggaaaagtgatattgttgttcagaacaagagaattgaaattga |
3456617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 117 - 378
Target Start/End: Complemental strand, 3481359 - 3481098
Alignment:
| Q |
117 |
ccaggaagagatcaagatatgttggaagaagtaacaatcttagaagaaccagctatagctgattttcaaagattaatggagcttacaaattatacagata |
216 |
Q |
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||||||| |||||| |||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
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| T |
3481359 |
ccaggaatggatcaaaatattttggaagaagtaacagtcttagaggaaccaattatagctgattttcaaagaattgtggagcttacagattatacagata |
3481260 |
T |
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| Q |
217 |
aagggtcatctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaaca |
316 |
Q |
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| T |
3481259 |
tagggtcttctcagttagctaatctcgtgaaacattgggagtataagcaggcaaatgcagtttgccttcttcgagaagagctcgacaaccttagcaaaca |
3481160 |
T |
|
| Q |
317 |
aaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaag |
378 |
Q |
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| T |
3481159 |
aaaggaggaagttgagcttaaaaagtgtgagatacttgaagacaataatagattcgaggaag |
3481098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 58 - 350
Target Start/End: Original strand, 48693755 - 48694050
Alignment:
| Q |
58 |
cttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatctt |
157 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||| || ||||| |||||||| ||||||| ||||||||| |||| ||||||||| ||||| | |
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| T |
48693755 |
cttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatcaagatgtgttagaagaagtatcaatcat |
48693854 |
T |
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| Q |
158 |
agaagaa---ccagctatagctgattttcaaagattaatggagcttacaaattatacagataaagggtcatctcaattggcttatttaatgcaacattgg |
254 |
Q |
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| T |
48693855 |
agatgaagttacaactatagctgatttcaagcgtctcattgagctcacgaatttcacagaaaaaggttcttctcaattagcctatcttatgaaacattgg |
48693954 |
T |
|
| Q |
255 |
gagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaacaaaggaaggaagttgagcaaagaaaattggagata |
350 |
Q |
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| T |
48693955 |
gagtataagcaggcgagcgtggcgcgtcttctaagagaagaactcgacaacctaaacaaacaaagacaggatgttgagctaaggaagttggagata |
48694050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 507
Target Start/End: Original strand, 48694156 - 48694198
Alignment:
| Q |
465 |
aaaagtaatgttgttgttcaaaacaagagaattgaaattgatg |
507 |
Q |
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| T |
48694156 |
aaaagtaatgttgttgtacaaaataagagagttgaaattgatg |
48694198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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