View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_high_4 (Length: 450)
Name: NF20502_high_4
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 167 - 432
Target Start/End: Complemental strand, 31942289 - 31942024
Alignment:
| Q |
167 |
gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942289 |
gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct |
31942190 |
T |
|
| Q |
267 |
gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942189 |
gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg |
31942090 |
T |
|
| Q |
367 |
agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatc |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942089 |
agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatc |
31942024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 167 - 432
Target Start/End: Complemental strand, 32001248 - 32000983
Alignment:
| Q |
167 |
gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001248 |
gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct |
32001149 |
T |
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| Q |
267 |
gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg |
366 |
Q |
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| T |
32001148 |
gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg |
32001049 |
T |
|
| Q |
367 |
agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatc |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001048 |
agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatc |
32000983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 167 - 362
Target Start/End: Complemental strand, 32004112 - 32003917
Alignment:
| Q |
167 |
gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct |
266 |
Q |
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|
||||||||||||| ||||||||| |||||||||||| || | ||||||||||||||||||||||| ||||||||||| || ||||||||||||||| | | |
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| T |
32004112 |
gaccatgaactttaccatgcttttagaatatcaagagaaaggggaagtgaaggttgaatgagtggtgtgattttgttgaggaaaagtcttgcaggttgtt |
32004013 |
T |
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| Q |
267 |
gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctccc |
362 |
Q |
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||||||||||||||||||| | |||||||||||||||||| | ||| || |||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
32004012 |
gtggtttggaggattcaaattaaagttgtctttgaacttttattttgttagtttctctaacaagtcttgcttttgcttccaaacgagcactttccc |
32003917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 31942436 - 31942334
Alignment:
| Q |
20 |
acaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942436 |
acagaaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat |
31942337 |
T |
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| Q |
120 |
gca |
122 |
Q |
| |
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||| |
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| T |
31942336 |
gca |
31942334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 32001395 - 32001293
Alignment:
| Q |
20 |
acaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat |
119 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001395 |
acagaaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat |
32001296 |
T |
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| Q |
120 |
gca |
122 |
Q |
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||| |
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| T |
32001295 |
gca |
32001293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 32004234 - 32004137
Alignment:
| Q |
20 |
acaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaaga---tcatcattggataacatcatagcatacat |
114 |
Q |
| |
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||||||||||| | |||||||| ||||||||| || ||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||| |
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| T |
32004234 |
acaggaagaggaagaggaagcagggttgttcccgggaagttcaaagtggatgtaggagattcaagattttcatcattggatgacatcataacatacat |
32004137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 3912071 - 3912013
Alignment:
| Q |
320 |
tctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgact |
378 |
Q |
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|||||||||||||| ||||| ||||| | | |||||| |||||||||||||||||||| |
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| T |
3912071 |
tctctaacaagtctagcttcagcttcaagtctagcactttcccattgagccatgtgact |
3912013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 28944732 - 28944780
Alignment:
| Q |
329 |
agtcttgcttctgcttccaaacgagcactctcccattgagccatgtgac |
377 |
Q |
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||||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
28944732 |
agtcttgcttctgcttcaagccttgcactctcccattgagccatgtgac |
28944780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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