View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_high_9 (Length: 317)
Name: NF20502_high_9
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 105 - 305
Target Start/End: Original strand, 6634904 - 6635104
Alignment:
| Q |
105 |
ccttccctaatcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcac |
204 |
Q |
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| T |
6634904 |
ccttccctaatcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcac |
6635003 |
T |
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| Q |
205 |
ccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6635004 |
ccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttga |
6635103 |
T |
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| Q |
305 |
t |
305 |
Q |
| |
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| |
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| T |
6635104 |
t |
6635104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6634794 - 6634833
Alignment:
| Q |
1 |
atattgaaaagtctcatattcttcacttcacaattgtctc |
40 |
Q |
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| T |
6634794 |
atattgaaaagtctcatattcttcacttcacaattgtctc |
6634833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 52163809 - 52163999
Alignment:
| Q |
115 |
tcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggttta |
214 |
Q |
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| T |
52163809 |
tcaagaatcaaaagaaaatggagtttgtaacagatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggttta |
52163908 |
T |
|
| Q |
215 |
ccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatgat |
305 |
Q |
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| T |
52163909 |
cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgat |
52163999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 305
Target Start/End: Original strand, 15964178 - 15964337
Alignment:
| Q |
146 |
agatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactg |
245 |
Q |
| |
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||||||||||| ||||||| | ||| |||||||||| | | || |||| | || ||||| ||||| |||||||||||||||||||||||||| || | |
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| T |
15964178 |
agatcataaggctcccaaagtgaatctaaaggacaagcttttttctcatcaagcctaacccaaggttttccttttccactccaatgcaataaactaacag |
15964277 |
T |
|
| Q |
246 |
gaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatgat |
305 |
Q |
| |
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|||||||||| | | |||||||| ||| ||||||||||||||||| ||||| |||| |
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| T |
15964278 |
gaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccatgttgat |
15964337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 305
Target Start/End: Original strand, 7266252 - 7266408
Alignment:
| Q |
149 |
tcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactggac |
248 |
Q |
| |
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||||| || ||||| | ||||||||| |||||||| | ||||||||| | || |||| |||||||| || ||||||||||| | ||||||||| || | |
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| T |
7266252 |
tcatatggggcccacaaagcatccaacggacaaggacgattagcatcaagcctggcccacggtttacccttcccactccaatgaagtaaactcaccgggc |
7266351 |
T |
|
| Q |
249 |
caggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatgat |
305 |
Q |
| |
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| T |
7266352 |
ccggatgcaaatcccgacaaagcccatggaaattatcaccgccaagcccatgttgat |
7266408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 48999158 - 48999205
Alignment:
| Q |
193 |
atccaatctcacccatggtttaccttttccactccaatgcaataaact |
240 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
48999158 |
atccaacctcaaccatggtttaccttttccactccaatgcaataaact |
48999205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 27101086 - 27101186
Alignment:
| Q |
205 |
ccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatga |
304 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | | ||||||| | | || ||||||||||||||||||||| ||| |
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| T |
27101086 |
ccatggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttga |
27101185 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
27101186 |
t |
27101186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 33346846 - 33346689
Alignment:
| Q |
148 |
atcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactgga |
247 |
Q |
| |
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|||||| || ||||| | ||||||||||||||||| ||||| |||| | || |||| || || |||||||||||||||||||| |||||||| || |
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| T |
33346846 |
atcatatggagcccacaaagcatccaaaggacaagccctattcccatcaagcctggcccacggcttcccttttccactccaatgcaacaaactcaccggg |
33346747 |
T |
|
| Q |
248 |
ccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatgat |
305 |
Q |
| |
|
|| ||||| | ||| | |||||| || |||||||||||||| || || ||||| |||| |
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|
| T |
33346746 |
cctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgat |
33346689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 2498498 - 2498598
Alignment:
| Q |
205 |
ccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgatga |
304 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | | ||||||| | | || ||||||||||||||||||||| ||| |
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| T |
2498498 |
ccatggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttga |
2498597 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
2498598 |
t |
2498598 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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