View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_low_10 (Length: 331)
Name: NF20502_low_10
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 14752661 - 14752358
Alignment:
| Q |
18 |
ggaatcaaaaagggtgatgttattctcctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcacca |
117 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752661 |
ggaatcaaaaagggtgatgttatcctcctcctttctcctaactccatttacttccctgtggtgtgtctcagtgtcatgtccctcggcgccatcatcacca |
14752562 |
T |
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| Q |
118 |
ccaccaatcccctcaacacagtacatgaaatcgcgaagcagatcgcggattccaaacctgtcctcgcctttacaacctcgcccctcatttccaaaatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14752561 |
ccaccaatcccctcaacacagtacatgaaatcgcgaagcagatcgcggattccaaacctgtcctcgcctttacaacctcgcccctcgtttccaaaatcaa |
14752462 |
T |
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| Q |
218 |
tgcagcatctccaactcttccaattattcttatggaagccgatgggaactcgacatcatcaaacacactggaggaaatgatgaagaaagaaggtcaatcc |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752461 |
tgcagcatcgccaactcttccaattattcttatggaagccgatgggaactcgacatcatcaaacacactggaggaaatgatgaagaaagaaggtcaatcc |
14752362 |
T |
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| Q |
318 |
tatg |
321 |
Q |
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|||| |
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| T |
14752361 |
tatg |
14752358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 8534963 - 8534830
Alignment:
| Q |
45 |
ctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatg |
144 |
Q |
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| T |
8534963 |
ctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtg |
8534864 |
T |
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| Q |
145 |
aaatcgcgaagcagatcgcggattccaaacctgt |
178 |
Q |
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| T |
8534863 |
aaattgctaaacagattgctgattccaaacctgt |
8534830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 8547985 - 8548118
Alignment:
| Q |
45 |
ctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatg |
144 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| || |
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| T |
8547985 |
ctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtg |
8548084 |
T |
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| Q |
145 |
aaatcgcgaagcagatcgcggattccaaacctgt |
178 |
Q |
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| T |
8548085 |
aaattgctaaacagattgctgattccaaacctgt |
8548118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 8600202 - 8600069
Alignment:
| Q |
45 |
ctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatg |
144 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| || |
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| T |
8600202 |
ctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtg |
8600103 |
T |
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| Q |
145 |
aaatcgcgaagcagatcgcggattccaaacctgt |
178 |
Q |
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|||| || || ||||| || |||||||||||||| |
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| T |
8600102 |
aaattgctaaacagattgctgattccaaacctgt |
8600069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 8613224 - 8613357
Alignment:
| Q |
45 |
ctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatg |
144 |
Q |
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||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| || |
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| T |
8613224 |
ctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtg |
8613323 |
T |
|
| Q |
145 |
aaatcgcgaagcagatcgcggattccaaacctgt |
178 |
Q |
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|||| || || ||||| || |||||||||||||| |
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| T |
8613324 |
aaattgctaaacagattgctgattccaaacctgt |
8613357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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