View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_low_12 (Length: 301)
Name: NF20502_low_12
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 30809340 - 30809197
Alignment:
| Q |
12 |
aaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttcttagtttacactaatttcttttttcaagt |
111 |
Q |
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| T |
30809340 |
aaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttcttagtttacactaatttctttttccaagt |
30809241 |
T |
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| Q |
112 |
ttataactttgttcaatgcactagttaaatatttatatattata |
155 |
Q |
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| T |
30809240 |
ttataactttgtccaatgcactagttaaatatttatatactata |
30809197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 30809191 - 30809122
Alignment:
| Q |
216 |
cagattatcaatcacggagtcccggagaatcaaatgaaagaaacaatgaatgttttcaaggaggtgtttc |
285 |
Q |
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| T |
30809191 |
cagattatcaatcatggagtcccagtgaatcaaatgaaagaaacaatgaatgtttttaaggaggtgtttc |
30809122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 30801933 - 30801864
Alignment:
| Q |
13 |
aagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc |
82 |
Q |
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| T |
30801933 |
aagggtgatagaagcaatataatcaagaaaattatcaaagctgctgaggagtttggattctttcaggttc |
30801864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 30784272 - 30784196
Alignment:
| Q |
208 |
gattgaagcagattatcaatcacggagtcccggagaatcaaatgaaagaaacaatgaatgttttcaaggaggtgttt |
284 |
Q |
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| T |
30784272 |
gattgaagtaggttatcaatcatggaatctcaatgaatcaaatgaaagaaacaatgagtgttttcaaggaggtgttt |
30784196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 30797596 - 30797527
Alignment:
| Q |
13 |
aagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc |
82 |
Q |
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| T |
30797596 |
aagggtgatagaaccaaaataattcaaaaaattattaaagctgctcagaagtttggattctttaaggttc |
30797527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 30750611 - 30750547
Alignment:
| Q |
16 |
ggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggt |
80 |
Q |
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| T |
30750611 |
ggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt |
30750547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 30752422 - 30752358
Alignment:
| Q |
16 |
ggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggt |
80 |
Q |
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| T |
30752422 |
ggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt |
30752358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 30762731 - 30762692
Alignment:
| Q |
41 |
aaatgatcaaagcttctgaggagtttggattctttcaggt |
80 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| |
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| T |
30762731 |
aaattatcaaggcttctgaggagtttggattctttcaggt |
30762692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 30795504 - 30795443
Alignment:
| Q |
17 |
gtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcag |
78 |
Q |
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|||||||||| ||||||||||| ||| | || |||||| || |||||||| ||||||||||| |
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| T |
30795504 |
gtgatagaaccaatataattcaaaaagttattaaagctgctcaggagttttgattctttcag |
30795443 |
T |
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