View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20502_low_13 (Length: 286)

Name: NF20502_low_13
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20502_low_13
NF20502_low_13
[»] chr1 (41 HSPs)
chr1 (1-269)||(14477587-14477856)
chr1 (113-269)||(14470907-14471064)
chr1 (14-268)||(41872628-41872881)
chr1 (113-234)||(41873879-41874001)
chr1 (133-269)||(15072718-15072855)
chr1 (131-269)||(35943373-35943512)
chr1 (1-92)||(14478494-14478584)
chr1 (143-268)||(23091403-23091530)
chr1 (1-92)||(51445817-51445907)
chr1 (113-241)||(44999370-44999499)
chr1 (111-244)||(46467222-46467355)
chr1 (113-230)||(46468627-46468745)
chr1 (113-221)||(15746675-15746783)
chr1 (113-265)||(46110337-46110489)
chr1 (176-269)||(16123338-16123432)
chr1 (116-266)||(27814346-27814497)
chr1 (208-270)||(45585013-45585075)
chr1 (173-266)||(44276176-44276269)
chr1 (210-270)||(50442674-50442734)
chr1 (4-75)||(48527778-48527848)
chr1 (210-269)||(52628879-52628938)
chr1 (146-202)||(9226156-9226213)
chr1 (209-266)||(15071396-15071453)
chr1 (209-270)||(24499660-24499721)
chr1 (145-186)||(34350248-34350289)
chr1 (146-222)||(46318559-46318635)
chr1 (4-203)||(48096835-48097031)
chr1 (113-189)||(18821647-18821723)
chr1 (209-269)||(50444703-50444763)
chr1 (4-75)||(3616693-3616763)
chr1 (115-269)||(16965035-16965192)
chr1 (13-75)||(5612895-5612956)
chr1 (113-202)||(12665909-12665998)
chr1 (13-75)||(26286656-26286717)
chr1 (115-269)||(34351875-34352021)
chr1 (207-265)||(44278352-44278410)
chr1 (146-191)||(13147357-13147402)
chr1 (210-251)||(15232821-15232862)
chr1 (209-269)||(15234046-15234106)
chr1 (209-269)||(46111493-46111553)
chr1 (113-189)||(52078052-52078128)
[»] chr7 (37 HSPs)
chr7 (1-269)||(4298764-4299034)
chr7 (1-269)||(40508429-40508682)
chr7 (113-269)||(4299956-4300113)
chr7 (113-269)||(40509642-40509799)
chr7 (113-269)||(22115072-22115229)
chr7 (113-268)||(3413584-3413740)
chr7 (4-268)||(47059160-47059427)
chr7 (12-266)||(47060285-47060537)
chr7 (120-269)||(43459506-43459655)
chr7 (113-269)||(43460730-43460888)
chr7 (117-269)||(13564150-13564304)
chr7 (174-269)||(11344558-11344651)
chr7 (1-191)||(41328349-41328535)
chr7 (1-92)||(39981543-39981633)
chr7 (113-266)||(32255043-32255199)
chr7 (163-268)||(46835727-46835834)
chr7 (113-269)||(47454388-47454544)
chr7 (117-269)||(22336030-22336184)
chr7 (208-266)||(45454092-45454150)
chr7 (169-245)||(24282940-24283017)
chr7 (210-266)||(32602987-32603043)
chr7 (120-269)||(30310172-30310322)
chr7 (207-269)||(30311472-30311534)
chr7 (154-269)||(33779036-33779149)
chr7 (113-202)||(40811437-40811529)
chr7 (209-266)||(6173455-6173512)
chr7 (208-269)||(33096920-33096981)
chr7 (210-269)||(47456381-47456440)
chr7 (113-202)||(669297-669386)
chr7 (146-203)||(46201248-46201306)
chr7 (209-266)||(40812618-40812675)
chr7 (7-203)||(16755988-16756181)
chr7 (189-269)||(45455358-45455437)
chr7 (210-269)||(30333336-30333395)
chr7 (113-191)||(35295829-35295907)
chr7 (209-251)||(40738843-40738885)
chr7 (120-245)||(11501255-11501380)
[»] chr4 (61 HSPs)
chr4 (1-269)||(49343802-49344075)
chr4 (14-269)||(42810014-42810268)
chr4 (113-269)||(49342670-49342827)
chr4 (113-269)||(6348206-6348362)
chr4 (63-234)||(13165581-13165752)
chr4 (111-245)||(13166675-13166810)
chr4 (1-92)||(26496108-26496198)
chr4 (113-269)||(2312388-2312547)
chr4 (113-201)||(4714139-4714228)
chr4 (113-230)||(53435661-53435779)
chr4 (113-270)||(1794461-1794621)
chr4 (169-269)||(42871146-42871246)
chr4 (210-266)||(44501572-44501628)
chr4 (209-266)||(1190197-1190254)
chr4 (146-264)||(15450015-15450135)
chr4 (207-268)||(31968395-31968456)
chr4 (113-251)||(53205391-53205530)
chr4 (183-268)||(4871342-4871428)
chr4 (209-270)||(1587232-1587293)
chr4 (209-269)||(1188894-1188954)
chr4 (145-270)||(52963619-52963744)
chr4 (114-262)||(5591357-5591508)
chr4 (114-262)||(48126862-48127013)
chr4 (129-269)||(50546957-50547099)
chr4 (113-263)||(53432119-53432270)
chr4 (13-75)||(1520055-1520116)
chr4 (211-269)||(1588096-1588154)
chr4 (211-269)||(1829804-1829862)
chr4 (1-75)||(52138590-52138663)
chr4 (145-269)||(6349491-6349618)
chr4 (209-270)||(44503684-44503744)
chr4 (113-269)||(52239928-52240086)
chr4 (4-96)||(36845633-36845724)
chr4 (175-269)||(37882885-37882981)
chr4 (211-270)||(24426389-24426448)
chr4 (207-266)||(42872302-42872361)
chr4 (113-188)||(44498594-44498669)
chr4 (113-203)||(56085464-56085555)
chr4 (190-268)||(31965887-31965964)
chr4 (207-269)||(50548226-50548288)
chr4 (208-269)||(2310974-2311035)
chr4 (208-269)||(7707639-7707700)
chr4 (120-268)||(7708704-7708852)
chr4 (176-269)||(390268-390361)
chr4 (209-269)||(1831268-1831328)
chr4 (111-201)||(8682754-8682845)
chr4 (1-73)||(45535291-45535362)
chr4 (173-269)||(10168750-10168848)
chr4 (113-188)||(19750202-19750277)
chr4 (113-188)||(19789529-19789604)
chr4 (113-234)||(36243605-36243727)
chr4 (4-75)||(6349352-6349420)
chr4 (113-186)||(27850845-27850918)
chr4 (129-203)||(33231506-33231582)
chr4 (120-157)||(35787957-35787994)
chr4 (209-269)||(393643-393703)
chr4 (209-269)||(4129044-4129104)
chr4 (209-269)||(10167476-10167536)
chr4 (1-73)||(23103807-23103878)
chr4 (210-266)||(54484367-54484423)
chr4 (210-250)||(54865174-54865214)
[»] chr5 (18 HSPs)
chr5 (113-251)||(33173867-33174007)
chr5 (113-269)||(30859078-30859237)
chr5 (113-266)||(22308707-22308861)
chr5 (148-269)||(22047783-22047907)
chr5 (113-269)||(325094-325250)
chr5 (179-266)||(22049111-22049198)
chr5 (123-202)||(35081355-35081435)
chr5 (4-203)||(1102735-1102932)
chr5 (114-269)||(30910792-30910950)
chr5 (111-268)||(27705221-27705380)
chr5 (113-269)||(39603904-39604063)
chr5 (133-269)||(30912091-30912227)
chr5 (150-250)||(33172623-33172723)
chr5 (208-269)||(39605473-39605534)
chr5 (113-153)||(26912251-26912291)
chr5 (208-266)||(15941327-15941385)
chr5 (146-191)||(4127194-4127239)
chr5 (209-250)||(22307578-22307619)
[»] scaffold0201 (1 HSPs)
scaffold0201 (113-266)||(21181-21335)
[»] chr8 (34 HSPs)
chr8 (1-269)||(42870864-42871133)
chr8 (113-269)||(32798439-32798597)
chr8 (113-270)||(32695181-32695341)
chr8 (129-262)||(42872114-42872247)
chr8 (210-269)||(29104371-29104430)
chr8 (189-270)||(41630111-41630190)
chr8 (63-269)||(6397834-6398039)
chr8 (83-268)||(8571494-8571681)
chr8 (173-266)||(26697801-26697894)
chr8 (1-191)||(9854677-9854865)
chr8 (113-269)||(22551058-22551214)
chr8 (113-221)||(38696407-38696516)
chr8 (209-268)||(8570170-8570229)
chr8 (227-269)||(13197964-13198006)
chr8 (120-269)||(32797189-32797341)
chr8 (210-266)||(28418860-28418916)
chr8 (210-266)||(28420180-28420236)
chr8 (110-220)||(14840804-14840915)
chr8 (113-203)||(24192571-24192662)
chr8 (113-188)||(30786810-30786885)
chr8 (4-191)||(43202226-43202411)
chr8 (177-250)||(212684-212758)
chr8 (177-250)||(239496-239570)
chr8 (177-250)||(726307-726381)
chr8 (177-250)||(792851-792925)
chr8 (177-250)||(798808-798882)
chr8 (207-269)||(26696583-26696645)
chr8 (116-220)||(17455147-17455252)
chr8 (210-266)||(6398503-6398559)
chr8 (209-269)||(29103538-29103598)
chr8 (146-220)||(10669386-10669461)
chr8 (113-269)||(44076269-44076428)
chr8 (209-251)||(13117638-13117680)
chr8 (120-269)||(13116381-13116530)
[»] scaffold0019 (1 HSPs)
scaffold0019 (113-251)||(63039-63178)
[»] chr3 (35 HSPs)
chr3 (14-266)||(23443268-23443519)
chr3 (1-92)||(13621147-13621237)
chr3 (1-92)||(49379929-49380019)
chr3 (113-262)||(42684934-42685084)
chr3 (113-269)||(38242423-38242581)
chr3 (175-266)||(40364373-40364465)
chr3 (113-266)||(53194779-53194932)
chr3 (146-268)||(34819225-34819348)
chr3 (113-268)||(53420368-53420525)
chr3 (209-266)||(41544716-41544773)
chr3 (175-269)||(38240957-38241051)
chr3 (209-268)||(53421766-53421825)
chr3 (146-269)||(53614213-53614338)
chr3 (120-270)||(35372075-35372224)
chr3 (212-270)||(37736089-37736147)
chr3 (210-269)||(18458663-18458722)
chr3 (148-266)||(3208538-3208658)
chr3 (209-269)||(18197198-18197258)
chr3 (210-266)||(50809475-50809531)
chr3 (210-266)||(50866331-50866387)
chr3 (1-73)||(54110083-54110154)
chr3 (207-265)||(12106629-12106687)
chr3 (210-268)||(42686151-42686209)
chr3 (115-269)||(18442303-18442454)
chr3 (115-269)||(19487377-19487528)
chr3 (209-270)||(53624366-53624427)
chr3 (210-266)||(37735360-37735416)
chr3 (1-73)||(44602842-44602913)
chr3 (210-266)||(50810840-50810896)
chr3 (210-266)||(50864968-50865024)
chr3 (111-202)||(21074186-21074279)
chr3 (121-270)||(40244237-40244385)
chr3 (211-270)||(44182332-44182391)
chr3 (173-229)||(20288192-20288249)
chr3 (210-269)||(36176512-36176572)
[»] chr2 (26 HSPs)
chr2 (146-270)||(43034411-43034537)
chr2 (148-269)||(43033133-43033254)
chr2 (120-269)||(32470491-32470640)
chr2 (133-269)||(11315984-11316120)
chr2 (1-94)||(4920858-4920950)
chr2 (211-269)||(17459304-17459362)
chr2 (1-92)||(28611052-28611142)
chr2 (113-269)||(29219436-29219595)
chr2 (113-269)||(29332735-29332894)
chr2 (113-266)||(28562718-28562871)
chr2 (146-269)||(12359620-12359744)
chr2 (173-270)||(28561418-28561517)
chr2 (113-191)||(34513461-34513539)
chr2 (113-269)||(18616912-18617071)
chr2 (146-269)||(11317308-11317433)
chr2 (133-269)||(17460613-17460749)
chr2 (113-203)||(34464085-34464176)
chr2 (125-203)||(34512930-34513008)
chr2 (111-219)||(34467607-34467716)
chr2 (210-269)||(34469009-34469068)
chr2 (111-269)||(32469199-32469360)
chr2 (113-221)||(35903607-35903715)
chr2 (113-157)||(2277377-2277421)
chr2 (113-157)||(20493481-20493525)
chr2 (113-189)||(26205142-26205218)
chr2 (210-266)||(36011648-36011704)
[»] scaffold0031 (2 HSPs)
scaffold0031 (146-269)||(124020-124143)
scaffold0031 (113-269)||(125138-125298)
[»] scaffold0118 (1 HSPs)
scaffold0118 (113-266)||(43481-43637)
[»] chr6 (17 HSPs)
chr6 (131-250)||(32506952-32507072)
chr6 (1-92)||(11723014-11723104)
chr6 (111-269)||(23392265-23392425)
chr6 (148-266)||(6452453-6452573)
chr6 (146-270)||(12669773-12669898)
chr6 (208-266)||(6452338-6452396)
chr6 (120-269)||(23397270-23397419)
chr6 (113-215)||(32505773-32505876)
chr6 (209-266)||(232230-232285)
chr6 (120-251)||(29380260-29380391)
chr6 (113-269)||(7311632-7311789)
chr6 (228-269)||(27082168-27082209)
chr6 (175-266)||(7310330-7310421)
chr6 (213-269)||(34024073-34024129)
chr6 (210-268)||(27080976-27081034)
chr6 (173-225)||(15728825-15728878)
chr6 (209-269)||(17839144-17839204)
[»] scaffold2071 (1 HSPs)
scaffold2071 (113-221)||(589-698)
[»] scaffold0077 (2 HSPs)
scaffold0077 (113-269)||(54091-54250)
scaffold0077 (209-269)||(52643-52703)
[»] scaffold0219 (1 HSPs)
scaffold0219 (113-191)||(8099-8176)
[»] scaffold0034 (2 HSPs)
scaffold0034 (113-268)||(109654-109809)
scaffold0034 (189-266)||(108567-108643)
[»] scaffold0126 (1 HSPs)
scaffold0126 (111-178)||(18469-18535)
[»] scaffold0078 (1 HSPs)
scaffold0078 (209-264)||(18868-18923)
[»] scaffold0011 (2 HSPs)
scaffold0011 (117-202)||(127551-127637)
scaffold0011 (12-73)||(127679-127739)
[»] scaffold0178 (1 HSPs)
scaffold0178 (113-153)||(1375-1414)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 14477587 - 14477856
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||    
T  14477587 aagaagagtgaagaagaagatgaagaaaatggagaaataattaggtgttgtttcctcaccgtaagataaaatacatatgtgtaatccaatgatcattctt 14477686  T
Q  101 ttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaactt 199  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  14477687 ttaaaaagacatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatctaccatagacatttagagttaaactt 14477786  T
Q  200 aacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  14477787 aacatcgaaggatttatttggcaaacggagaaaaaagtgagggacttaaacgtacgttttattaattgtg 14477856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 14471064 - 14470907
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaagga 211  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||| |||||| |||||| |||||||||||| |||||||    
T  14471064 atcaaacggtcaaaatttaaaaaattaatgaagtttatggtggaccactcttaaggttggtccactatagacgtttggggttaaacttaacaccgaagga 14470965  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  14470964 tttatttggcaaacgaaggaaaaagtgagggacttaaccgtacgttttattaattgtg 14470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 41872881 - 41872628
Alignment:
Q  14 aagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttnnnnnnncata 113  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||||||| ||||  |||  |||||| ||  ||||        |||    
T  41872881 aagaaggtgaagaaa-gggagaaataattaagtgttgttgactcaccgtaagataaaatacacctgtataattgaatgataatcttttttcaaaaaaata 41872783  T
Q  114 tcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg--ttaaacttaacatcgaagga 211  Q
    |||| ||||| ||||| ||||| ||||| | |||||||||| || | ||||||||||| | |||||||||||||||||  |||||||||||| | || ||    
T  41872782 tcaa-cggtttaaattaaaaaatttaataaggtctatggtgaactaatcttaagattggttcaccatagacatttgggggttaaacttaacacc-aatga 41872685  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  41872684 tttatttggcaaacggaggaaaaagtgagagacttaaacgtacgttttattaattgt 41872628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 41873879 - 41874001
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||| | |||||    
T  41873879 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccaccatagacatttgtggttaaacttaacaaccaagga 41873978  T
Q  212 tttatttgacaaacagaggaaaa 234  Q
    ||||||||  |||| ||||||||    
T  41873979 tttatttggtaaacggaggaaaa 41874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 15072718 - 15072855
Alignment:
Q  133 aaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagagga 231  Q
    |||||||||  |||||| ||||||| |||||| || ||| ||||||||||||||||| ||||||| ||||||   | ||||||||||| ||||| |||||    
T  15072718 aaaattaatagagtctacggtggaccactctttaggttggtccaccatagacatttgaggttaaagttaacagacatggatttatttggcaaacggagga 15072817  T
Q  232 aaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||| | ||||||  ||| |||||||||||||||||||    
T  15072818 aaaaataagggaccaaaatgtacgttttattaattgtg 15072855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 269
Target Start/End: Original strand, 35943373 - 35943512
Alignment:
Q  131 aaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcga-aggatttatttgacaaacaga 228  Q
    ||||| ||||| | ||||||||||||  ||||||||| ||| |||||||||||||||| ||||||||||||||| | |  ||||||||||| |||||  |    
T  35943373 aaaaatttaataaggtctatggtggatcactcttaaggttggtccaccatagacatttagggttaaacttaacagccaggggatttatttggcaaacgaa 35943472  T
Q  229 ggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||  ||| |||||||||||||||||||    
T  35943473 ggaaaaagtga-ggaccaaaatgtacgttttattaattgtg 35943512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 14478584 - 14478494
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||| ||| | ||| ||||||    
T  14478584 aagaaaagtgaggaagaagatgaagaaa-gggagaaataattaagtgttgttgactcaccgtaagataaaatacacctgcgtaattcaatga 14478494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 23091530 - 23091403
Alignment:
Q  143 aagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacat-cgaaggatttatttgacaaacagaggaaaaagtgag 240  Q
    ||||||||||||||| ||| ||||  ||| ||||||||||||||||| | ||||||||||||  | | ||||||||||| ||||| ||| ||||||||||    
T  23091530 aagtctatggtggaccacttttaaagttggtccaccatagacatttgagattaaacttaacagactagggatttatttggcaaacggagaaaaaagtgag 23091431  T
Q  241 ggacttaaacgtacgttttattaattgt 268  Q
     |||  ||||||||||||||||||||||    
T  23091430 tgaccaaaacgtacgttttattaattgt 23091403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 51445907 - 51445817
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||| ||||||||||||| ||| | ||||||||||    
T  51445907 aagaagggtgaggaagaagatgaagaaa-gggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatga 51445817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 44999370 - 44999499
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    |||||| |||| || || ||| ||||||| |  ||||||||| || ||||||| ||||| ||||||||||||||||  ||||||| |||||| | | |||    
T  44999370 atcaaatggtttaagttaaaataattaataagatctatggtgaaccactcttacgattggtccaccatagacatttaaggttaaagttaacagctaggga 44999469  T
Q  212 tttatttgacaaacagaggaaaaagtgagg 241  Q
    |||||||| ||||||||||||||| |||||    
T  44999470 tttatttggcaaacagaggaaaaaatgagg 44999499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 46467355 - 46467222
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaag 209  Q
    ||||||||||||| ||||| ||||| ||||| |  |||| ||||||  ||| ||||  ||| ||||||||||||||||  |||||||||||||| ||| |    
T  46467355 atatcaaacggtttaaatt-aaaaatttaataacatctacggtggatcacttttaatgttggtccaccatagacatttatggttaaacttaacagcgagg 46467257  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggac 244  Q
    |||||||||||||||| |||| |||  ||||||||    
T  46467256 gatttatttgacaaacggaggcaaacctgagggac 46467222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 46468627 - 46468745
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    |||||||||||||||||| | ||||||||||||||||||||| || ||||||||  | ||||  |  |||| || || ||||||||||| || ||  |||    
T  46468627 atcaaacggttaaaattttataaattaatgaagtctatggtgaaccactcttaaagtggatctgctgtagatatctgaggttaaacttatcagcgtggga 46468726  T
Q  212 tttatttgacaaacagagg 230  Q
    |||||||||||||||||||    
T  46468727 tttatttgacaaacagagg 46468745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 15746675 - 15746783
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    |||||| |||||||||| |||| ||||||    |||||||||||| ||||||||||||| |||||||||||||||||  |||||||||||||  | | ||    
T  15746675 atcaaagggttaaaatt-aaaagattaataggatctatggtggaccactcttaagattggtccaccatagacatttgaagttaaacttaacagtggatga 15746773  T
Q  212 tttatttgac 221  Q
    ||||||||||    
T  15746774 tttatttgac 15746783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 46110489 - 46110337
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca-tcgaagg 210  Q
    ||||||||||||||||| | ||||||||| | ||||| | ||||| ||||||||| ||| ||||||||||| |||| | |||||| |||||| ||||  |    
T  46110489 atcaaacggttaaaattaacaaaattaataaggtctacgatggaccactcttaaggttggtccaccatagatatttagagttaaagttaacagtcga--g 46110392  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaat 265  Q
    ||||||||  ||||| ||| ||||  |||| |||  ||| |||||||||||||||    
T  46110391 atttatttagcaaacggagaaaaacttgagtgaccaaaaagtacgttttattaat 46110337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 16123432 - 16123338
Alignment:
Q  176 accatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||| | |||||||||||| | | ||||||||||| ||||| || |||||| ||||||||| ||||||   ||||||||||||||    
T  16123432 accatagacatttgagattaaacttaacaaccagggatttatttggcaaacggaagaaaaaatgagggactaaaacgtgaattttattaattgtg 16123338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 27814497 - 27814346
Alignment:
Q  116 aaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaac-ttaaca-tcgaaggat 212  Q
    |||||||||||||| | ||||||||| | || || | ||||| ||| ||||  ||| |||||||||||||||| | ||||||  |||||  |||  ||||    
T  27814497 aaacggttaaaattaacaaaattaataaggtttacgatggaccacttttaaagttggtccaccatagacatttagagttaaaagttaaccgtcg--ggat 27814400  T
Q  213 ttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||| ||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  27814399 ttatttggcaaacagaggaaaaaatgagggaccaaaaggtacgttttattaatt 27814346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 45585013 - 45585075
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    |||||||||||| ||||| ||||||||||||| ||||  ||| ||||||||||||||||||||    
T  45585013 aggatttatttggcaaacggaggaaaaagtgaaggaccaaaaggtacgttttattaattgtga 45585075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 44276269 - 44276176
Alignment:
Q  173 tccaccatagacatttg-ggttaaacttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||  |||||| |||||||||||||| ||  |||||||| ||||||||||||| ||||||||| |||   ||||||||||||||||||||    
T  44276269 tccaccatacgcatttgtggttaaacttaacagtc--aggatttaattgacaaacagagaaaaaagtgaaggatcaaaacgtacgttttattaatt 44276176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 50442734 - 50442674
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||||||||||||||||||| |||||| |   ||| ||||||||||||||||||||    
T  50442734 gatttatttgacaaacagaggaaaaggtgaggaatcaaaatgtacgttttattaattgtga 50442674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 48527848 - 48527778
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    |||||||||||||||||||||||||| | | || ||||||| |||| || |||||||| |||||||||||||    
T  48527848 aagagtgaggaagaagatgaagaaaa-gaaaaattaattagttgttattgactcaccggaagataaaataca 48527778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 52628879 - 52628938
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| ||||| ||||||||| ||||||||  ||| |||||||||||||||||||    
T  52628879 gatttatttggcaaacggaggaaaaaatgagggaccaaaaggtacgttttattaattgtg 52628938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 9226156 - 9226213
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac 202  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||| ||||||| |||||    
T  9226156 tctatggtggaccacttttaaggttgatccaccatagacatttgaggttaaatttaac 9226213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 15071453 - 15071396
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||  |||| ||||||||||||||||||  |||| |||||||||||||||    
T  15071453 ggatttatttggtaaacggaggaaaaagtgagggaccaaaacatacgttttattaatt 15071396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 24499660 - 24499721
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    |||||||||||  |||| ||||||||||||||||||  ||||||  ||||||||||||||||    
T  24499660 ggatttatttggtaaacggaggaaaaagtgagggaccaaaacgtgagttttattaattgtga 24499721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 34350289 - 34350248
Alignment:
Q  145 gtctatggtggacaactcttaagattgatccaccatagacat 186  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  34350289 gtctatggtggaccactcttaaggttgatccaccatagacat 34350248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 46318559 - 46318635
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaaggatttatttgaca 222  Q
    |||||||||||| ||||| || | | ||||| |||||||||||||| |||||||||||| | ||||||||||||||||    
T  46318559 tctatggtggaccactctaaa-agtaatccatcatagacatttggggttaaacttaacagccaaggatttatttgaca 46318635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 48096835 - 48097031
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttn 103  Q
    |||||| |||||||||||||||||||  || || ||||||| |||| |  |||||||| ||||||||||||| || || ||||||||| ||   ||  |     
T  48096835 aagagtaaggaagaagatgaagaaaa-agaaaattaattagttgttatcgactcaccgtaagataaaatacacctatgtaatccaatggtc---ctcgta 48096930  T
Q  104 nnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac 202  Q
           | |||||||| |||| ||||||| |||||||    |||||||| ||| ||||||||| ||| ||||||||| ||||||| |||||||||||||    
T  48096931 aaaaaaaagatcaaacgattaatatttaaataattaataggatctatggtagaccactcttaaggttggtccaccatatacatttgaggttaaacttaac 48097030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 18821647 - 18821723
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg 189  Q
    |||||||||||||| ||||||||||||||    ||| |||| ||| ||||||||| ||  |||||||||||||||||    
T  18821647 atcaaacggttaaattttaaaaaattaataggatctttggtagaccactcttaaggttagtccaccatagacatttg 18821723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 50444703 - 50444763
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||| | ||||||||| ||||||||  ||| |||||||||||||||||||    
T  50444703 ggatttatttggcaatcggaggaaaaaatgagggaccaaaatgtacgttttattaattgtg 50444763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 3616693 - 3616763
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    ||||||||||||||||||||||  ||||| ||| ||||||| ||||||| ||||||   |||||||||||||    
T  3616693 aagagtgaggaagaagatgaag-gaagggggaattaattagttgttgttgactcactctaagataaaataca 3616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 16965035 - 16965192
Alignment:
Q  115 caaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaac-atcgaag 209  Q
    ||||||||| ||||| ||| |||||||    |||||||||||| ||||||||  ||| ||||||||| ||||    | |||||||||||||| |||| |     
T  16965035 caaacggttgaaattaaaataattaataggatctatggtggaccactcttaaagttggtccaccatatacatcatttggggttaaacttaaccatcgga- 16965133  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     |||||||||| |||| || ||||| || ||||||| ||||||   ||||||||||||||    
T  16965134 -atttatttgataaacggaagaaaatgtaagggactaaaacgtcatttttattaattgtg 16965192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 5612895 - 5612956
Alignment:
Q  13 gaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    |||||||||||||||| |||||| ||||||| |||||||| | |||||  |||||||||||||    
T  5612895 gaagaagatgaagaaa-gggagacataattaagtgttgttgattcaccataagataaaataca 5612956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 12665998 - 12665909
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac 202  Q
    ||||||||||| ||||| | ||||||||| |  |||||||||||| |||||||||| || | ||||||| ||||||| ||||||| |||||    
T  12665998 atcaaacggtttaaattaacaaaattaataagatctatggtggaccactcttaaga-tggttcaccataaacatttgaggttaaagttaac 12665909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 26286717 - 26286656
Alignment:
Q  13 gaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    |||||||||||||||| |||||| |||||||||| ||||| | |||||| | |||||||||||    
T  26286717 gaagaagatgaagaaa-gggagacataattaggttttgttgattcaccgtacgataaaataca 26286656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 34351875 - 34352021
Alignment:
Q  115 caaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgggttaaacttaacatcgaaggattt 214  Q
    |||| ||||||||||  ||| |||||| | || |||||||||| ||||||||| ||| ||||||||||||  ||  ||| |||    ||||  |||||||    
T  34351875 caaagggttaaaattagaaatattaataaggtttatggtggaccactcttaag-ttggtccaccatagactcttaagtttaac----catc--aggattt 34351967  T
Q  215 atttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||||  |||||||||||||||||  ||| |||| ||||||||||||||    
T  34351968 -tttgacaaacgtaggaaaaagtgagggaccaaaaggtacattttattaattgtg 34352021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 44278352 - 44278410
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaat 265  Q
    |||||| |||||| ||||| ||| ||||| ||||||||  |||||||||||||||||||    
T  44278352 aaggatctatttggcaaacggagaaaaaaatgagggaccaaaacgtacgttttattaat 44278410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 13147357 - 13147402
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    |||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  13147357 tctatggtggaccactattaaggttggtccaccatagacatttggg 13147402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 15232862 - 15232821
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    |||||||||| |||||||||||||| |||||||||| |||||    
T  15232862 gatttatttggcaaacagaggaaaatgtgagggactaaaacg 15232821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 15234046 - 15234106
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  15234046 ggatttatttggcaaacggaggaaaatgtgagggactaaaacgccatttttattaattgtg 15234106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 46111493 - 46111553
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| |||||  |||||||| ||||| ||  ||| |||||||||||||||||||    
T  46111493 ggatttatttggcaaacgaaggaaaaaatgaggaaccaaaaggtacgttttattaattgtg 46111553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 52078052 - 52078128
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg 189  Q
    ||||||||||||||||| ||| |||||||    ||||||||| |  ||||||||| ||| | |||||||||||||||    
T  52078052 atcaaacggttaaaattaaaataattaataggatctatggtgtatcactcttaaggttggttcaccatagacatttg 52078128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 4299034 - 4298764
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||    
T  4299034 aagaagaatgaagaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccataagataaaatacatctgtgtgatccaatgatcattctt 4298935  T
Q  101 ttnnnnnnn-catatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaact 198  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||    
T  4298934 ttaaaaaaaacatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaggattgatccaccatacacgtttagggttaaact 4298835  T
Q  199 taacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||| || |||||||||| ||||||||||||||||||||||||||||||  || ||||||||||||||    
T  4298834 taacatcaaatgatttatttggcaaacagaggaaaaagtgagggacttaaacccacattttattaattgtg 4298764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 40508682 - 40508429
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||                |||  ||||||||||||||||||    
T  40508682 aagaagagtgaagaagaagatgaagaaaagggagaaataattaagtgttgtttactcaccg----------------tgtataatccaatgatcattctt 40508599  T
Q  101 ttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaactt 199  Q
    ||       ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40508598 ttaaaaaaacatatcaaacggttaaaatttaaaaaattaatgaaatctatggtggacaactcttaagattgatccaccatagacatttgggattaaactt 40508499  T
Q  200 aacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  40508498 aacaccgaaggatttatttggctaacggaggaaaaagtgagggacttaaacgtacgttttattaattgtg 40508429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 4299956 - 4300113
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaagga 211  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||| |||||| |||||||||||| |||| ||    
T  4299956 atcaaacggtcaaaatttaaaaaattaatgaagtctatggtgggccactcttaaggttgatccactatagacgtttggggttaaacttaacaccgaaaga 4300055  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300056 tttatttggcaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 4300113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 40509642 - 40509799
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaagga 211  Q
    ||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||| |||||||||||| |||| ||    
T  40509642 atcaaacagtcaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccactatagacatttggggttaaacttaacaccgaatga 40509741  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||  |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  40509742 tttatttggtaaacggaggaaaaagtgaggaacttaaacgtacgttttattaattgtg 40509799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 22115072 - 22115229
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    ||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||||| |||| ||    
T  22115072 atcaaacagtcaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccactatagacatttggggttaaacttaacaccgaanga 22115171  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||   ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  22115172 tttatttggtnaacggaggaaaaagtgaggaacttaaacgtacgttttattaattgtg 22115229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 3413740 - 3413584
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||   | |||    
T  3413740 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatctgaagttaaacttaacagttaggga 3413641  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    |||||||| ||||||||| |||| |||||||||| |||||    |||||||||||||    
T  3413640 tttatttggcaaacagagtaaaaggtgagggactaaaacgccatttttattaattgt 3413584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 47059427 - 47059160
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttn 103  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||| || |||||| | |||||||||||||  || | ||||||||| |||| |||||     
T  47059427 aagagtgaggaagaagatgaagaaa-gagagaaataatcaggtgttattgactcactgtaagataaaatacacatgcgtaatccaatggtcatcctttta 47059329  T
Q  104 nnnnnncatatcaaacggttaaaatttaaaaaa--ttaatgaagtctatggtggacaactcttaagattgatccaccatagacattt---gggttaaact 198  Q
          || ||||||||||| ||||| ||||||  ||||| | ||||||||||| | ||||||||| ||| |||||||||||| |||   ||||||||||    
T  47059328 aataaacagatcaaacggtttaaattaaaaaaaaattaataaggtctatggtgggctactcttaaggttgctccaccatagacttttggagggttaaact 47059229  T
Q  199 taac-atcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||||  ||  |||||||||||| ||||| |||||||||||||||||   |||||||| |||||||||||||    
T  47059228 taacggtc--aggatttatttggcaaacggaggaaaaagtgagggatcaaaacgtacattttattaattgt 47059160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 47060285 - 47060537
Alignment:
Q  12 ggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttnnnnnnnca 111  Q
    |||||||||| |||||| ||||||||||||||||||||||| || ||||  |||||||||||||  |||| ||| ||||| |||| |||||       ||    
T  47060285 ggaagaagataaagaaa-gggagaaataattaggtgttgttgacacaccataagataaaatacacttgtgtaattcaatggtcatccttttaaaaaa-ca 47060382  T
Q  112 tatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaaca-tcgaag 209  Q
     |||||||| ||||| |||||||| ||||| | ||||||||||||| | ||||||| ||| ||||||||| |||||||| ||||||||||||| ||   |    
T  47060383 aatcaaacgattaaattttaaaaatttaataaggtctatggtggactattcttaaggttggtccaccatatacatttggtgttaaacttaacagtc--cg 47060480  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||  |||  |||||||||  ||||||||||||||||||||    
T  47060481 gatttatttggcaaacggaaaaaagggtgagggaccaaaacgtacgttttattaatt 47060537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 43459655 - 43459506
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatttattt 218  Q
    |||||||||| | ||||||||| | ||||| | || || | | ||||| |||||||||||||||||||||| ||||||||||||| |  || ||||||||    
T  43459655 ggttaaaattaacaaaattaataaggtctacgatgtaccatttttaaggttgatccaccatagacatttggagttaaacttaacagccgag-atttattt 43459557  T
Q  219 gacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    | ||||| ||||||||  ||||||||||||||| |||||||||||||||||    
T  43459556 ggcaaacggaggaaaacatgagggacttaaacgcacgttttattaattgtg 43459506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 43460730 - 43460888
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat---ttgggttaaacttaacatcgaag 209  Q
    |||||| |||| ||||| ||| |||||||    |||||||||||| ||||||||  ||| ||||||||||||||   ||| ||||||||||||   || |    
T  43460730 atcaaagggtttaaattaaaataattaataggatctatggtggaccactcttaaagttggtccaccatagacataatttgagttaaacttaactgtga-g 43460828  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| ||||  ||||||||||||||||||| ||| |||||||||||||||||||    
T  43460829 gatttatttggcaaatggaggaaaaagtgagggactaaaatgtacgttttattaattgtg 43460888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 13564150 - 13564304
Alignment:
Q  117 aacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt----gggttaaacttaacatcgaaggat 212  Q
    ||||||| ||||| ||| |||||||    |||||||||||| |||||||||  ||||||||||||||||||     |||||||||||||| |||  ||||    
T  13564150 aacggttcaaattaaaataattaataggatctatggtggaccactcttaaggatgatccaccatagacattatttggggttaaacttaacgtcg--ggat 13564247  T
Q  213 ttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||| ||||| |||||||| |||||||||| |||||   |||||||||||||||    
T  13564248 ttatttggcaaacggaggaaaatgtgagggactaaaacgccagttttattaattgtg 13564304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 11344651 - 11344558
Alignment:
Q  174 ccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| ||||| |||||||||||||| |||| |||||||||||||||| ||| |||   ||| |||||||||||||||||||||||||||||    
T  11344651 ccaccatagatatttgaggttaaacttaacaccgaaagatttatttgacaaacggagaaaa---tgaaggacttaaacgtacgttttattaattgtg 11344558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 41328535 - 41328349
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    ||||| ||||||||||||||||||||||  ||||||||||||| |||||||| |||||||| |||||||||||||| || | ||||||| || | | |||    
T  41328535 aagaaaagtgaggaagaagatgaagaaa--ggagaaataattaagtgttgttgactcaccgtaagataaaatacatatgcgtaatccaacgaccctcctt 41328438  T
Q  101 ttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    ||        ||||||||||||| |||||  || |||||||    |||||||||||| | | ||||  ||| |||||||||||||||||||    
T  41328437 ttaaaaaa--atatcaaacggtttaaattagaataattaataggatctatggtggaccatttttaaagttgttccaccatagacatttggg 41328349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 39981633 - 39981543
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    |||||||||||||||||||||||||||| ||||||| || |||| ||||||| |||||||| |||||||||||||  || | ||||||||||    
T  39981633 aagaagagtgaggaagaagatgaagaaa-gggagaattagttagttgttgttgactcaccgtaagataaaatacacatgcgtaatccaatga 39981543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 266
Target Start/End: Complemental strand, 32255199 - 32255043
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaaca-tcga 207  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    | ||||||||||||||  |||     
T  32255199 atcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccataaacatcatttggggttaaacttaaccgtcg- 32255101  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
     ||||||||||| ||||| |||||||||||||||||   ||| ||||||||||||||||    
T  32255100 -ggatttatttggcaaacggaggaaaaagtgagggatcaaaatgtacgttttattaatt 32255043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 46835834 - 46835727
Alignment:
Q  163 ttaagattgatccaccatagacat----ttgggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttt 258  Q
    |||||| |||||||||||| ||||    | |||||||||||||| ||||  |||||||||||||||||||||||||| |||| ||||||||  ||| |||    
T  46835834 ttaagaatgatccaccataaacatcatttggggttaaacttaacttcga--gatttatttgacaaacagaggaaaaattgagagacttaaaaatacattt 46835737  T
Q  259 tattaattgt 268  Q
    ||||||||||    
T  46835736 tattaattgt 46835727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 47454544 - 47454388
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca-tcgaagg 210  Q
    ||||||||||||||||| | ||||||||| | ||||| | ||||| ||||||||| ||| || ||||||||||||| | |||||| |||| | |||  ||    
T  47454544 atcaaacggttaaaattaataaaattaataaggtctacgatggaccactcttaaggttggtctaccatagacatttagagttaaagttaatagtcg--gg 47454447  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||| |||||  || ||||  ||||||||  ||| |||||||||||||||||||    
T  47454446 atttatttggcaaacgaagaaaaacttgagggaccaaaatgtacgttttattaattgtg 47454388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 269
Target Start/End: Complemental strand, 22336184 - 22336030
Alignment:
Q  117 aacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccataga--catttggg-ttaaacttaacat-cgaaggat 212  Q
    ||||||| ||||| ||| |||||||    |||||||||||| ||| ||||| ||||||||||||||   |||||||| ||||||||||||| ||  ||||    
T  22336184 aacggttgaaattaaaataattaataggatctatggtggaccacttttaaggttgatccaccatagcatcatttggggttaaacttaacattcg--ggat 22336087  T
Q  213 ttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  22336086 ttatttggcaaactgaggaaaaggtgagggactaaaacgccatttttattaattgtg 22336030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 45454150 - 45454092
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  45454150 aggatttatttggcaaacggaggaaaaagtgagggactaaaacgtatgttttattaatt 45454092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 24282940 - 24283017
Alignment:
Q  169 ttgatccaccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggact 245  Q
    ||||||||||||||||||||||| ||||| |||||| | | ||||||||||| ||||| |||||||| ||||||||||    
T  24282940 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 24283017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 32603043 - 32602987
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  32603043 gatttatttggcaaacggagtaaaaagtgagggactaaaacgtacgttttattaatt 32602987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 30310322 - 30310172
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactct-taagattgatccaccatagacatttgggttaaactt-aacatcgaaggatttatt 217  Q
    ||||||||||| ||||||||   |||||||||||||||  |||| |||  ||  ||||||||||||||||||| | ||||| ||||     |||||||||    
T  30310322 ggttaaaattttaaaaattatcaaagtctatggtggact-ctctataatgttagtccaccatagacatttggggttaactttaacagtctgggatttatt 30310224  T
Q  218 tgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    || ||||| ||||||||| ||||| ||| ||| |||||||||||||||||||    
T  30310223 tggcaaacggaggaaaaaatgaggaactcaaatgtacgttttattaattgtg 30310172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 30311472 - 30311534
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||| ||| | ||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  30311472 aaggatttaattggctaacagagaaaaaaatgagggacttaaacgtatgttttattaattgtg 30311534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 33779036 - 33779149
Alignment:
Q  154 ggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgt 252  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||||||||||| | || |||||||| |     | |||||||||| |||||||| ||||||    
T  33779036 ggaccactcttaaggttggtccaccatagacatttgtggttaaacttaacagccaaagatttattgg---ggcggaggaaaaagcgagggactaaaacgt 33779132  T
Q  253 acgttttattaattgtg 269  Q
      |||||||||||||||    
T  33779133 gagttttattaattgtg 33779149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 40811529 - 40811437
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccataga---catttgggttaaacttaac 202  Q
    ||||||||||| ||||| |||| ||||||  | |||||||||||| ||||||||| ||| |||||||||||   ||||||||||||| |||||    
T  40811529 atcaaacggtttaaattaaaaatattaatagaatctatggtggaccactcttaaggttggtccaccatagacatcatttgggttaaagttaac 40811437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 6173455 - 6173512
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| ||||||||||||||||    
T  6173455 ggatttatttggcaaacggaggaaaaagtgagggaccaaaatgtacgttttattaatt 6173512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 33096981 - 33096920
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||||||||||    
T  33096981 aggatttatttggcaaacggaggaaaaagtgagggaccaaaaggtaagttttattaattgtg 33096920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 47456381 - 47456440
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| |||||||| |||||| ||||||||  ||| |||||||||||||||||||    
T  47456381 gatttatttggcaaacagaagaaaaaatgagggaccaaaaagtacgttttattaattgtg 47456440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 669297 - 669386
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac 202  Q
    ||||||||||| ||||| | |||||||||    |||||||||||| |||||||||| || ||||||||||||||||| ||||||| |||||    
T  669297 atcaaacggtttaaattaacaaaattaataggatctatggtggaccactcttaaga-tggtccaccatagacatttgaggttaaagttaac 669386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 46201306 - 46201248
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca 203  Q
    |||||||||||| ||||||||| ||| | |||||||||||||| |||||||||||||||    
T  46201306 tctatggtggaccactcttaaggttggttcaccatagacatttggggttaaacttaaca 46201248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 40812618 - 40812675
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||| |||||||||||||||||||||  |||||||   ||||||||||||||||||||    
T  40812618 ggatatatttgacaaacagaggaaaatatgagggagcaaaacgtacgttttattaatt 40812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 16756181 - 16755988
Alignment:
Q  7 agtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttnnnn 106  Q
    |||||||||||| |||||| || ||| ||| ||||||| ||||||| |||||| | |||||||||||||  || | |||| |||| || | |||||        
T  16756181 agtgaggaagaatatgaaggaatggg-gaattaattagttgttgttgactcactgtaagataaaatacacttgcgtaatctaatggtcctccttttaaaa 16756083  T
Q  107 nnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaaca 203  Q
        | |||||| |||||||||| ||| |||||||    |||||||| ||||||| ||||| ||| | ||||||||||||||| ||||||| ||||||    
T  16756082 a---aaatcaaatggttaaaattaaaataattaataggatctatggtagacaacttttaaggttgtttcaccatagacatttgaggttaaagttaaca 16755988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 45455358 - 45455437
Alignment:
Q  189 gggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||||| | | | ||||||||| ||||| ||| |||||||||||||   ||| |||||||||||||||||||    
T  45455358 gggttaaacttaacagccatg-atttatttggcaaacggagaaaaaagtgagggatcaaaatgtacgttttattaattgtg 45455437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 30333395 - 30333336
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||| ||| ||||| ||||||||  |||  ||||||||||||||||||    
T  30333395 gatttatttgacaaacggagaaaaaaatgagggaccaaaagatacgttttattaattgtg 30333336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 35295907 - 35295829
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||||||||| ||| ||||||| ||| |||||||    
T  35295907 atcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccacagatatttggg 35295829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 40738843 - 40738885
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||    
T  40738843 ggatttatttggcaaacagagcaaaaagtgagggactaaaacg 40738885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 11501380 - 11501255
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaaca-tcgaaggatttatt 217  Q
    |||||||||| | ||||||||| | |||||   || || ||| ||||| ||| |||||||||||||||||  |||||| |||||| |||  |||||||||    
T  11501380 ggttaaaattaacaaaattaataaggtctacaatgaaccacttttaaggttggtccaccatagacatttgaagttaaagttaacagtcg--ggatttatt 11501283  T
Q  218 tgacaaacagaggaaaaagtgagggact 245  Q
    || ||||  |||||||| ||||||||||    
T  11501282 tggcaaatggaggaaaaggtgagggact 11501255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 61)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 49343802 - 49344075
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||    
T  49343802 aagaagagtgaagaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccataagataaaatacatctgtgtaatccaacgatcattctt 49343901  T
Q  101 ttnnnnnnn---catatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagaca-tttgggttaaa 196  Q
    ||          |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||    
T  49343902 ttaaaaaaaaaacatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaacttttaagattgatccaccatagatacttagggttaaa 49344001  T
Q  197 cttaacatcgaaggatttatttgacaaacagaggaaaaagtg-agggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||  |||||||||||||||||    
T  49344002 cttaacatcgaatgatttatttggcaaacggaggaaaaagtgaagggacttaaacccacgttttattaattgtg 49344075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 42810014 - 42810268
Alignment:
Q  14 aagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttnnnnnnncata 113  Q
    |||||| |||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||| ||||  |||  |||| ||||  ||||       ||||    
T  42810014 aagaaggtgaagaaa-gggagaaataattagatgttgttgactcaccgtaagataaaatacacctgtataattgaatggtcatctttttttaaaaacata 42810112  T
Q  114 tcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg--ttaaacttaacatcgaagga 211  Q
     ||| ||||| ||||| ||||| ||||| | ||||||||||||| ||||||||||||| | |||||||||||| ||||  |||||||||||| | |||||    
T  42810113 acaa-cggtttaaattaaaaaatttaataaggtctatggtggactactcttaagattggttcaccatagacatctgggggttaaacttaacacc-aagga 42810210  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  42810211 tttatttggcaaacggaggaaaatgtgagggacttaaaagtacgttttattaattgtg 42810268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 49342827 - 49342670
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaagga 211  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||||| ||| ||||| |||||| |||||| |||||||||||| ||||  |    
T  49342827 atcaaacggtcaaaatttaaaaaattaatgaagtttatagtggaccacttttaaggttggtccactatagacgtttggggttaaacttaacaccgaataa 49342728  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  49342727 tttatttaacaaatggaggaaaaagtgagggacttaaacgtacattttattaattgtg 49342670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 6348362 - 6348206
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac-atcgaagg 210  Q
    |||||| ||||||||||  ||| |||||| | ||||| ||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||| |||  ||     
T  6348362 atcaaagggttaaaattagaaatattaataaggtctacggtggaccactcttaaggttggtccaccatagacatttgaggttaaacttaaccatc--aga 6348265  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||    
T  6348264 atttatttgacaaacagaggaaaaagtgaggaaccaaaaggtacgttttattaattgtg 6348206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 13165752 - 13165581
Alignment:
Q  63 aagataaaatacatctgtgaaatccaatgatcattcttttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactc 162  Q
    ||||||||||||||||| | ||||||||||  ||||||||        | ||||||||||| ||||| ||| ||||||||||||||||||||||| ||||    
T  13165752 aagataaaatacatctgcgtaatccaatgactattcttttaaaaaaa-agatcaaacggtttaaattaaaataattaatgaagtctatggtggaccactc 13165654  T
Q  163 ttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaa 234  Q
    ||||| ||| ||||||||||| |||||  |||||||||||||   ||||||||||||||||||| ||||||||    
T  13165653 ttaaggttggtccaccatagaaatttgaagttaaacttaacagtcaaggatttatttgacaaacggaggaaaa 13165581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 13166675 - 13166810
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaag 209  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||  ||||||| | ||| |||| ||||||||||||  |||||||||||||   |||    
T  13166675 atatcaaacggttaaaatttaaaatattaatgaattctatggtggatcactcttacggttggtccatcatagacatttgaagttaaacttaacagtcaag 13166774  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggact 245  Q
    |||||||||| ||||| || ||||||||||||||||    
T  13166775 gatttatttggcaaacggatgaaaaagtgagggact 13166810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26496108 - 26496198
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  26496108 aagaaaagtgaggaagaagatgaagaaa-gggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgtgtaatccaatga 26496198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 2312388 - 2312547
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaaca-tcga 207  Q
    ||||||| ||| ||||| ||| |||||||    |||||||||||| ||| ||||||||| ||||||||||||||    | ||||||||||||||  ||      
T  2312388 atcaaacagtttaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacggtc-- 2312485  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    | |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2312486 atgatttatttggcaaacggaggaaaaagtgagggacttaaacgtacgttttattaattgtg 2312547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 4714228 - 4714139
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaa 201  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||    
T  4714228 atcaaatggttaaaatttaaaatattaatgaagtctatggtggaccactcttaaggttgatccaccatagacatttgaagttaaacttaa 4714139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 53435661 - 53435779
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| || |||||||||||||   ||||||||||||    |||||    
T  53435661 atcaaacggttaaaatttaaaaaattaatgaagtctacggtggaccactcttaaggttggtctaccatagacatttaaagttaaacttaaccgtcaagga 53435760  T
Q  212 tttatttgacaaacagagg 230  Q
    |||||||||| ||| ||||    
T  53435761 tttatttgaccaacggagg 53435779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 270
Target Start/End: Complemental strand, 1794621 - 1794461
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat---ttggg-ttaaacttaacatcga- 207  Q
    ||||||||||| ||||| ||||| ||||| | ||||||||||||| ||||||||| ||| ||||||||| ||||   ||||| |||||||||||  ||      
T  1794621 atcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccaccatatacatcatttgggattaaacttaac--cgtt 1794524  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||||||||||||||||||||||||||||||   ||| |||  |||||||||||||||    
T  1794523 aggatttatttgacaaacagaggaaaaagtgagggatcaaaaggtatattttattaattgtga 1794461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 42871246 - 42871146
Alignment:
Q  169 ttgatccaccatagacatttggg-ttaaacttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| |||||||||||  |||||||||||| ||  |||||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||    
T  42871246 ttgatccaccgtagacatttggaattaaacttaacagtc--aggatttatttggcaaacggaggaaaaagtgagggaccaaaacgtacgttttattaatt 42871149  T
Q  267 gtg 269  Q
    |||    
T  42871148 gtg 42871146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 44501628 - 44501572
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  44501628 gatttatttggcaaacagagaaaaaagtgagggacttaaacgtacgttttattaatt 44501572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 1190197 - 1190254
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  1190197 ggatttatttggcaaacagagaaaaaagtgaggtacttaaacgtacgttttattaatt 1190254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 15450015 - 15450135
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagaca---tttgg-gttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagg 241  Q
    |||||||||||| ||||||||| ||| ||||| |||||||   ||||| ||||||||||||  || | |||||||||| ||||| |||||||| || ||     
T  15450015 tctatggtggaccactcttaaggttggtccacgatagacaacatttggagttaaacttaac--cgtaagatttatttggcaaacggaggaaaaggtaagc 15450112  T
Q  242 gacttaaacgtacgttttattaa 264  Q
    |||||||||||||||||||||||    
T  15450113 gacttaaacgtacgttttattaa 15450135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 31968395 - 31968456
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  31968395 aaggatttatttggcaaacagaggaaaaagtgaaggaccaaaacgtacgttttattaattgt 31968456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 53205391 - 53205530
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactct-taagattgatccaccatagacatttggg-ttaaacttaacatcgaagg 210  Q
    |||||| |||||||||| | |||||| || ||||||| || |||| | ||| |||  ||||||||||||||||||||| | ||||| |||||| | | ||    
T  53205391 atcaaagggttaaaattaacaaaattgataaagtctacggcggacca-tctataatgttgatccaccatagacatttgagattaaagttaacacccatgg 53205489  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    ||||||||| ||||| ||||||||||||||||||| |||||    
T  53205490 atttatttggcaaacggaggaaaaagtgagggactaaaacg 53205530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 4871342 - 4871428
Alignment:
Q  183 acatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||||||||| ||||| |||||||  | ||||||||||||||||| ||| |||| ||| ||||||||||| |||||||||||||||||    
T  4871342 acatttgggattaaagttaacattcagggatttatttgacaaacggagaaaaacgtgggggacttaaacatacgttttattaattgt 4871428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 1587293 - 1587232
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  1587293 ggatttatttggcaaacggaggaaaaagtgagggaccaaaaggtacgttttattaattgtga 1587232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 1188954 - 1188894
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  1188954 ggatttatttggcaaacggaggaaaaagtgagggaccaaaatgtacgttttattaattgtg 1188894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 52963744 - 52963619
Alignment:
Q  145 gtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgaggg 242  Q
    ||||||| ||||| ||| |||||  || |||||||||||||||||| |||||| |||||| ||||  |||||||||||||||| ||| ||||  ||||||    
T  52963744 gtctatgatggaccacttttaaggctggtccaccatagacatttggagttaaagttaacagtcga--gatttatttgacaaacggagaaaaacttgaggg 52963647  T
Q  243 acttaaacgtacgttttattaattgtga 270  Q
    ||  |||| |||| ||||||||||||||    
T  52963646 accaaaacatacgatttattaattgtga 52963619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 262
Target Start/End: Original strand, 5591357 - 5591508
Alignment:
Q  114 tcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaa-ctcttaagatt-gatccaccatagacatttgg-gttaaacttaacatcgaagg 210  Q
    ||||| ||||||||||  |||||||||| | ||||||||||||| | || | | | || |||| ||||||||||||||  |||||| |||||| | || |    
T  5591357 tcaaagggttaaaattggaaaaattaataaggtctatggtggactatctataatgttttgatctaccatagacatttgaagttaaatttaacagccaaag 5591456  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttatt 262  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||||  ||||||||    
T  5591457 atttatttggcaaacagagaaaagagtgagggactaaaacgtgagttttatt 5591508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 48127013 - 48126862
Alignment:
Q  114 tcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaa-ctcttaagatt-gatccaccatagacatttgg-gttaaacttaacatcgaagg 210  Q
    ||||| ||||||||||  |||||||||| | ||||||||||||| | || | | | || |||| ||||||||||||||  |||||| |||||| | || |    
T  48127013 tcaaagggttaaaattggaaaaattaataaggtctatggtggactatctataatgttttgatctaccatagacatttgaagttaaatttaacagccaaag 48126914  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttatt 262  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||||  ||||||||    
T  48126913 atttatttggcaaacagagaaaagagtgagggactaaaacgtgagttttatt 48126862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 50547099 - 50546957
Alignment:
Q  129 ttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt--gggttaaacttaacatcgaaggatttatttgacaaaca 226  Q
    |||||||||||||  ||| |||||||||| |||  |||| || |||| ||||||||||||  |||||||||||||||   | ||||||||||| |||||     
T  50547099 ttaaaaaattaatagagtttatggtggaccacttctaaggtttatccgccatagacatttgagggttaaacttaacaggtagggatttatttggcaaacg 50547000  T
Q  227 gaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    | ||||||  ||||||||| |||||    ||||||||||||||    
T  50546999 gtggaaaagatgagggactaaaacgccatttttattaattgtg 50546957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 263
Target Start/End: Complemental strand, 53432270 - 53432119
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    ||||||||||||||||| ||||||||||| | || |||||||  | ||||||||  ||| | |||||||||||||| ||||||||||||||    | |||    
T  53432270 atcaaacggttaaaattgaaaaaattaataaggtgtatggtgagccactcttaaagttggttcaccatagacatttggggttaaacttaaccgtcaggga 53432171  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttatta 263  Q
    |||||||||| |||  ||| |||  ||||||||  |||| || |||||||||    
T  53432170 tttatttgaccaacgaaggcaaacttgagggaccaaaacataagttttatta 53432119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 1520116 - 1520055
Alignment:
Q  13 gaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    |||||||||||||||| |||||| |||||||||||||||| | |||||| |||||||||||||    
T  1520116 gaagaagatgaagaaa-gggagacataattaggtgttgttgattcaccgtaagataaaataca 1520055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 1588096 - 1588154
Alignment:
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||  |||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  1588096 atttatttggtaaacggaggaaaaagtgagggatttaaacgtacattttattaattgtg 1588154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 1829862 - 1829804
Alignment:
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||  |||||||||||||||||| |||  ||||||||||||||||||    
T  1829862 atttatttgacaaacgtaggaaaaagtgagggactaaaagatacgttttattaattgtg 1829804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 52138590 - 52138663
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    ||||||||||| ||||||||||||||||| | |||| ||||||| |||| || |||||||| |||||||||||||    
T  52138590 aagaagagtgaagaagaagatgaagaaaa-gaagaattaattagttgttattgactcaccgtaagataaaataca 52138663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 6349491 - 6349618
Alignment:
Q  145 gtctatggtggacaactcttaagattgatccaccatagaca----tttgggttaaacttaac-atcgaaggatttatttgacaaacagaggaaaaagtga 239  Q
    ||||||||||||| ||||||||| ||||||||||||| |||    || ||||||||||||||  |||  |||| ||||||  |||| || ||||| ||||    
T  6349491 gtctatggtggaccactcttaaggttgatccaccatatacatcatttggggttaaacttaacgttcg--ggatctatttggtaaacggaagaaaaggtga 6349588  T
Q  240 gggacttaaacgtacgttttattaattgtg 269  Q
    |||||  ||| |||||||||||||||||||    
T  6349589 gggaccaaaaggtacgttttattaattgtg 6349618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 44503684 - 44503744
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||||| ||||||||||||||||||||||||  ||| ||||| ||||||||||||||    
T  44503684 ggatttatttggcaaacagaggaaaaagtgagggaccaaaatgtacg-tttattaattgtga 44503744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 52240086 - 52239928
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccataga---catttgggttaaacttaacatcgaag 209  Q
    ||||||||||| ||||| |||| ||||||    |||||||||||| ||||||||| ||| |||||||||||   ||||||||||||| |||||  |   |    
T  52240086 atcaaacggtttaaattaaaaatattaataggatctatggtggaccactcttaaggttggtccaccatagacatcatttgggttaaagttaac-ccttgg 52239988  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||| ||||| ||| ||||  ||| | ||  |||||||||||||||||||||||    
T  52239987 aatttatttggcaaacggagaaaaacctgaagaaccaaaacgtacgttttattaattgtg 52239928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 36845724 - 36845633
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcat 96  Q
    ||||||||||||| ||||||||||| | || |||||||||  ||||||| ||| |||| ||||||||||||| ||| | ||||||||| ||||    
T  36845724 aagagtgaggaaggagatgaagaaa-gagaaaaataattacctgttgttgacttaccgtaagataaaatacacctgcgtaatccaatggtcat 36845633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 37882981 - 37882885
Alignment:
Q  175 caccatagacatttggg-ttaaacttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||| ||||| | ||||| |||||| || || |||||||||| ||||| |||||||| |||||||||  ||| |||||||||||||||||||    
T  37882981 caccatagatatttgagattaaagttaacagtcaaatgatttatttggcaaacggaggaaaaggtgagggaccaaaaggtacgttttattaattgtg 37882885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 24426448 - 24426389
Alignment:
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    |||| |||| ||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  24426448 atttttttggcaaacggaggaaaaagtgagggaccaaaaggtacgttttattaattgtga 24426389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 42872302 - 42872361
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||| ||||||| ||||| ||||||||||||||||||  |||||||| |||||||||||    
T  42872302 aaggaattatttggcaaacggaggaaaaagtgagggaccaaaacgtacattttattaatt 42872361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 44498669 - 44498594
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt 188  Q
    |||||||||||  |||| ||| |||||||    |||||||||||| ||||||||| ||||||||||||||||||||    
T  44498669 atcaaacggttttaattaaaataattaataggatctatggtggaccactcttaaggttgatccaccatagacattt 44498594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 56085555 - 56085464
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca 203  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||||||||| ||  |||||||||||||||| |||||||| ||||||    
T  56085555 atcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttagtccaccatagacatttggggttaaagttaaca 56085464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 31965964 - 31965887
Alignment:
Q  190 ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    |||||||||||||| | | ||||||||||| ||||| ||||||||||||||||||  ||| |||| |||| ||||||||    
T  31965964 ggttaaacttaacaccca-ggatttatttggcaaacggaggaaaaagtgagggaccaaaatgtacattttcttaattgt 31965887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 50548226 - 50548288
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||   | ||||||||||||    
T  50548226 aaggatttatttggcaaacagaggaaaatgtgagggactaaaacgttattcttattaattgtg 50548288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 2311035 - 2310974
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||| ||| | ||||||||  ||||||||  |||||||||||||||||||||||    
T  2311035 aggatttatttggcaatcggaggaaaatctgagggaccaaaacgtacgttttattaattgtg 2310974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 7707700 - 7707639
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||| |||||||||||||| |||| ||||| ||||||   ||||||||||||||    
T  7707700 aggatttatttggcaaacagaggaaaatgtgatggactaaaacgtcatttttattaattgtg 7707639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 268
Target Start/End: Original strand, 7708704 - 7708852
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatttattt 218  Q
    ||||| |||| | ||||||||| | ||||||| || || ||| ||||| ||| ||||||||||| |||| | |||||| |||||| |   ||||||||||    
T  7708704 ggttagaattaacaaaattaataaggtctatgatgtaccacttttaaggttggtccaccatagatatttagagttaaagttaaca-cttgggatttattt 7708802  T
Q  219 gacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    | ||||||||| |||| |||||||||| |||||    |||||||||||||    
T  7708803 ggcaaacagagaaaaaggtgagggactaaaacgccacttttattaattgt 7708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 390361 - 390268
Alignment:
Q  176 accatagacatttg-ggttaaacttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||| ||||||||| |||||||||||||| ||  |||||||||||| ||||| |||||| || ||||||||  |||  ||||||||||||||||||    
T  390361 accacagacatttgaggttaaacttaacagtc--aggatttatttggcaaacggaggaagaaatgagggaccaaaatatacgttttattaattgtg 390268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 1831268 - 1831328
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||| |||  ||||||||| ||||||||  ||| |||||||||||||||||||    
T  1831268 ggatttatttgaaaaatggaggaaaaaatgagggaccaaaatgtacgttttattaattgtg 1831328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 8682754 - 8682845
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattga-tccaccatagacatttgg-gttaaacttaa 201  Q
    |||||||| |||| ||||| |||||||||||    |||||| ||||| |||||||||||| | |||||||||||||||||| |||||||||||    
T  8682754 atatcaaagggttgaaatt-aaaaaattaatatgatctatgatggaccactcttaagatttagtccaccatagacatttggtgttaaacttaa 8682845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45535362 - 45535291
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaata 73  Q
    |||||||||||||| ||||||||| ||| | ||||| ||||||| ||||||| |||||| | |||||||||||    
T  45535362 aagaagagtgaggatgaagatgaa-aaaggagagaattaattagttgttgttgactcactgtaagataaaata 45535291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 269
Target Start/End: Original strand, 10168750 - 10168848
Alignment:
Q  173 tccaccatagacatttggg--ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||||||  ||||| |||||    | ||||||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  10168750 tccaccatagacatttgggggttaaagttaactgtcatggatttatttggcaaacggaggaaaatgtgagggactaaaacgccatttttattaattgtg 10168848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 19750202 - 19750277
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt 188  Q
    |||||||| || ||||| ||| |||||||    |||||||||||||||| ||||||||  ||||||||||||||||    
T  19750202 atcaaacgatttaaattaaaataattaataggatctatggtggacaacttttaagatttgtccaccatagacattt 19750277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 19789604 - 19789529
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt 188  Q
    |||||||| || ||||| ||| |||||||    |||||||||||||||| ||||||||  ||||||||||||||||    
T  19789604 atcaaacgatttaaattaaaataattaataggatctatggtggacaacttttaagatttgtccaccatagacattt 19789529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 36243727 - 36243605
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    |||||||||||||| || ||||| | |||  | |||||||||||  ||||||||||||| |||||   ||||||||| ||||||| |||||||| ||| |    
T  36243727 atcaaacggttaaagttaaaaaattcaatagaatctatggtggaacactcttaagattggtccacttaagacatttgaggttaaagttaacatctaagaa 36243628  T
Q  212 tttatttgacaaacagaggaaaa 234  Q
      | |||||| ||||||| ||||    
T  36243627 cctttttgactaacagagcaaaa 36243605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 6349352 - 6349420
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaataca 75  Q
    ||||||||||||||||| |||||||   || || ||||||| ||||||| |||||||  |||||||||||||    
T  6349352 aagagtgaggaagaagaagaagaaa---gaaaattaattagttgttgttgactcaccataagataaaataca 6349420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 27850845 - 27850918
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat 186  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||| ||||| ||| ||||||||||||||    
T  27850845 atcaaacggtttaaattaaaataattaataggatctatggtggaccacttttaaggttggtccaccatagacat 27850918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 33231582 - 33231506
Alignment:
Q  129 ttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt--gggttaaacttaaca 203  Q
    |||||||||||||  ||| |||||||||| |||  |||| ||  ||||||||||||||||  |||||||||||||||    
T  33231582 ttaaaaaattaatagagtttatggtggaccacttctaaggtttgtccaccatagacatttgagggttaaacttaaca 33231506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 35787994 - 35787957
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggac 157  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  35787994 ggttaaaatttaaaaatttaataaagtctatggtggac 35787957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 393643 - 393703
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| ||| ||||||||||||||  |||  ||| ||||||||||||||    
T  393643 ggatttatttggcaaacggagaaaaaagtgagggaccaaaagatactttttattaattgtg 393703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 4129104 - 4129044
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| ||| ||||||| ||||||  ||| |||| ||||||||||||||    
T  4129104 ggatttatttggcaaacggagaaaaaagtaagggaccaaaatgtacattttattaattgtg 4129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 10167536 - 10167476
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||||||| ||||||||  ||||||||| ||| | |  ||||||||||||||    
T  10167536 ggatttatttgacaaacggaggaaaatatgagggactaaaatgcaatttttattaattgtg 10167476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23103807 - 23103878
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaata 73  Q
    |||||||||||||| ||||||||| ||| | ||||| |||| || ||||||| |||||| | |||||||||||    
T  23103807 aagaagagtgaggatgaagatgaa-aaaggagagaattaatgagttgttgttgactcactgtaagataaaata 23103878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 54484423 - 54484367
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||||||||||||  | ||||||  ||||| ||||||||||||||    
T  54484423 gatttatttggcaaacagaggaaaattttagggaccaaaacgaacgttttattaatt 54484367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 54865214 - 54865174
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  54865214 gatttatttgacaaacggaggaaaatgtgagggactaaaac 54865174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 33173867 - 33174007
Alignment:
Q  113 atcaaacggttaaaatttaaaa-aattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagg 210  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||| ||||||||||||||| | ||||    
T  33173867 atcaaacggttaaaatttaaaaaaattaatgaagtctatggtagaccactcttaaggttggtccaccatagacatttggggttaaacttaacagccaagg 33173966  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    ||||||||| |||||||||||||| |||||||||| |||||    
T  33173967 atttatttggcaaacagaggaaaaggtgagggactaaaacg 33174007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 30859078 - 30859237
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaacatcgaa 208  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||||||||||||| ||||||||||||||    | ||||||||||||||    ||    
T  30859078 atcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaagattggtccaccatagacatcatttggggttaaacttaacggtcaa 30859177  T
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    | | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30859178 g-acttatttggcaaacagaggaaaatgtgagggacttaaacgtacgttttattaattgtg 30859237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 22308707 - 22308861
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    |||||| |||| | ||| ||||| ||||| | ||||||||||||| ||||||||| | | |||||||||||||||| ||||||||||||||| | | |||    
T  22308707 atcaaatggtttacattaaaaaatttaataatgtctatggtggaccactcttaaggtaggtccaccatagacatttggggttaaacttaacaaccatgga 22308806  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||| ||||| ||| |||| |||||||||| |||||   ||||||||||||    
T  22308807 tttatttggcaaacggagcaaaatgtgagggactaaaacgcctgttttattaatt 22308861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 22047907 - 22047783
Alignment:
Q  148 tatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgaggga 243  Q
    |||||||||| ||||||||| ||||||||||||||||||    | | ||||||||||||| | | ||||||||||| ||||| ||||||||| |||||||    
T  22047907 tatggtggaccactcttaaggttgatccaccatagacatcatttagagttaaacttaacagcca-ggatttatttggcaaacggaggaaaaaatgaggga 22047809  T
Q  244 cttaaacgtacgttttattaattgtg 269  Q
    |  |||||||||||||||||||||||    
T  22047808 ccaaaacgtacgttttattaattgtg 22047783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 325094 - 325250
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca-tcgaagg 210  Q
    ||||||||||||||||| | ||||||||| | ||||| | ||||| ||| ||||| ||| |||||||||||||||| | |||||| |||||| |||  ||    
T  325094 atcaaacggttaaaattaacaaaattaataaggtctacgatggaccactattaaggttggtccaccatagacatttagagttaaagttaacagtcg--gg 325191  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||| ||||| ||||||||  ||||||||  ||| |||||||||||||||||||    
T  325192 atttatttggcaaacggaggaaaacttgagggaccaaaaggtacgttttattaattgtg 325250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 22049111 - 22049198
Alignment:
Q  179 atagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||||| |||||||||||| | | ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  22049111 atagacatttggggttaaacttaacagc-agggatttatttgccaaacagaggaaaaagtgagggaccaaaacgtacgttttattaatt 22049198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 35081355 - 35081435
Alignment:
Q  123 taaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac 202  Q
    ||||||| ||||||||| | | || |||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||    
T  35081355 taaaattaaaaaaattattaaggtttatggtggacaactcttaaggttgatccactatagacatttgaggttaaagttaac 35081435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 1102932 - 1102735
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttn 103  Q
    |||||||||||||||||||||| ||||| | || ||||||| |||| || |||||||| |||||||||||||  ||   |||||| || ||||  |||      
T  1102932 aagagtgaggaagaagatgaag-aaaggaaaaattaattagctgttattgactcaccgtaagataaaatacacttgcataatccactggtcatcattt-- 1102836  T
Q  104 nnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaac 202  Q
           | ||||||||||| ||||| ||| ||||||| |  |||||||||||| ||||||||| ||| || ||||||||||||| |||||||| |||||    
T  1102835 aaaaaaaagatcaaacggtttaaattaaaataattaataagatctatggtggaccactcttaaggttggtctaccatagacatttggggttaaagttaac 1102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 30910950 - 30910792
Alignment:
Q  114 tcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat---ttgg-gttaaacttaaca-tcgaa 208  Q
    |||||||||| ||||| ||| |||||||    |||||||||||| ||||||||| ||| ||||||| ||||||   |||| |||||| |||||| ||||     
T  30910950 tcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccaaagacatcatttggtgttaaagttaacagtcga- 30910852  T
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||||  ||||||||||||| |||||||||| |||||    ||||||||||||||    
T  30910851 -gatttatttggtaaacagaggaaaatgtgagggactaaaacgccatttttattaattgtg 30910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 27705221 - 27705380
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccataga---catttgggttaaacttaacatcga 207  Q
    ||||||||||||| ||||| |||| ||||||    |||||||||||| ||| ||||| ||| |||||||||||   ||||||| ||||| ||||| |       
T  27705221 atatcaaacggtttaaattaaaaatattaataggatctatggtggaccacttttaaggttggtccaccatagacatcatttggattaaagttaac-tgtc 27705319  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
     | ||||||||| ||||  ||||||||  ||||||||  ||||||||||||||||||||||    
T  27705320 tgtatttatttggcaaaaggaggaaaatctgagggaccaaaacgtacgttttattaattgt 27705380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 39604063 - 39603904
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaaca-tcga 207  Q
    ||||||| ||| ||||| ||| |||||||    |||||||||||  ||| ||||| ||| || |||||||||||    | ||||||||||||||| ||      
T  39604063 atcaaacagtttaaattaaaataattaataggatctatggtggatcacttttaaggttggtctaccatagacatcatttggggttaaacttaacagtc-- 39603966  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    | |||||||||| ||||| ||||||||  ||||||||  |||||||||||||||||||||||    
T  39603965 atgatttatttggcaaacggaggaaaatttgagggaccaaaacgtacgttttattaattgtg 39603904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 30912091 - 30912227
Alignment:
Q  133 aaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatttatttgacaaacagagga 231  Q
    ||||||||| | ||||||| || || ||| ||||| ||| ||||||||||| |||||| |||||| |||||| |   ||||||||||| ||||| ||| |    
T  30912091 aaaattaataaggtctatgatgtaccacttttaaggttggtccaccatagatatttggagttaaagttaaca-cttgggatttatttggcaaacggagaa 30912189  T
Q  232 aaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||| |||||||||| |||||    ||||||||||||||    
T  30912190 aaaggtgagggactaaaacgccacttttattaattgtg 30912227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 33172723 - 33172623
Alignment:
Q  150 tggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaa 248  Q
    |||||||| ||||||||  ||| ||||| ||||| ||||||| |||||||||||| ||| ||||||||||| ||||| ||| |||| |||| ||||| ||    
T  33172723 tggtggaccactcttaatgttg-tccactatagaaatttggggttaaacttaacaccgatggatttatttggcaaacggagaaaaatgtgaaggactaaa 33172625  T
Q  249 ac 250  Q
    ||    
T  33172624 ac 33172623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 39605473 - 39605534
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||| ||||| ||||||||  ||||||||  ||||||| |||||||||||||||    
T  39605473 aggatttatttggcaaacggaggaaaatctgagggaccaaaacgtatgttttattaattgtg 39605534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 26912251 - 26912291
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggt 153  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  26912251 atcaaacggttaaaattaaaaaatttaatgaagtctatggt 26912291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 15941385 - 15941327
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||| ||||||||||||| || |||||||||||||||  ||  ||||||||||||||||    
T  15941385 aggacttatttgacaaacggaagaaaaagtgagggaccaaatggtacgttttattaatt 15941327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 4127194 - 4127239
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    |||||||||||| ||| |||||||||||| | ||||||||||||||    
T  4127194 tctatggtggaccacttttaagattgatctatcatagacatttggg 4127239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 22307619 - 22307578
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||    
T  22307619 ggatttatttggcaaacagagcaaaaagtgagggactaaaac 22307578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 113 - 266
Target Start/End: Complemental strand, 21335 - 21181
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||||| |||||||||||||| |||| ||    
T  21335 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactctgaaggttggtccaccatagacatttgtggttaaacttaacaacgaatga 21236  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||| ||||| ||||||||| | |||||   ||| |||| |||||||||||    
T  21235 tttatttggcaaacggaggaaaaactaagggatcaaaaggtactttttattaatt 21181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 42871133 - 42870864
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| | | |||||||||||||  || | ||| ||||| |||| |||    
T  42871133 aagaagagggaggaagaagatgaagaaa-gggagaaataattaggtgttgttgactcgcggtaagataaaatacacatgcgtaattcaatggtcatcctt 42871035  T
Q  101 ttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt----gggttaaa 196  Q
    ||       || ||||||||||| |||||  |||| ||||| | ||||| ||||||| ||||||||||||| ||||| |||||||| |    ||||||||    
T  42871034 ttaaaaca-cagatcaaacggtttaaattacaaaatttaataaggtctacggtggaccactcttaagattggtccacaatagacatcttttggggttaaa 42870936  T
Q  197 cttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||| ||  |||||| ||| | |||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  42870935 cttaacagtc--aggattcattcggcaaacagacgaaaaagtaagggactaaaacgtacgttttattaattgtg 42870864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 32798439 - 32798597
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat---ttgggttaaacttaacatcgaag 209  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||||||||| ||||||||||||||||||   ||| ||||||||||||   || |    
T  32798439 atcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttgatccaccatagacatcatttgagttaaacttaaccgtga-g 32798537  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||| ||| ||||| ||||||||| ||| |||||||||||||||||||    
T  32798538 gatttatttgacaaacggagaaaaaattgagggactaaaaggtacgttttattaattgtg 32798597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 32695181 - 32695341
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaaca-tcga 207  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| | ||||||||||| | ||||||||||||    | ||||||||||||||  ||      
T  32695181 atcaaacggtttaaattaaaataattaataggatctatggtggaccaatcttaagattggttcaccatagacatcatttggggttaaacttaacggtc-- 32695278  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    |||| | ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  32695279 aggactaatttggcaaacagaggaaaacgtgaaggacttaaacgtacgttttattaattgtga 32695341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 42872114 - 42872247
Alignment:
Q  129 ttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaaca-tcgaaggatttatttgacaaaca 226  Q
    |||||||||||||    |||||||| ||| ||||||||| ||| || |||||||||||||| ||||||| |||||  ||  ||||||||||||||||||     
T  42872114 ttaaaaaattaataggatctatggtagaccactcttaaggttggtctaccatagacatttgaggttaaagttaaccgtc--aggatttatttgacaaacg 42872211  T
Q  227 gaggaaaaagtgagggacttaaacgtacgttttatt 262  Q
    ||||||||||||| ||||| ||||||||||||||||    
T  42872212 gaggaaaaagtgaaggactaaaacgtacgttttatt 42872247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 29104371 - 29104430
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  29104371 gatttatttgacaaacagaggaaaaaatgagggacttaaacatacgttttattaattgtg 29104430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 41630111 - 41630190
Alignment:
Q  189 gggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    |||||||||||||| |||  |||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||    
T  41630111 gggttaaacttaacttcg--ggatttatttaacaaacatagaaaaaattgagggacttaaaggtacgttttattaattgtga 41630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 6398039 - 6397834
Alignment:
Q  63 aagataaaatacatctgtgaaatccaatgatcattcttttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactc 162  Q
    |||||||||||||| |||| |||| ||||||||| |||||       || |||||| |||| ||||| ||||||||||| | ||||||||||||| |||     
T  6398039 aagataaaatacatttgtgtaatcaaatgatcatcctttttaaaaa-cagatcaaatggtttaaattaaaaaaattaataaggtctatggtggaccactg 6397941  T
Q  163 ttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttat 261  Q
    | ||| ||| |  |||||||  |||||| |||||| |||||||  | | ||||||||| ||||| ||| ||||| ||||||||| ||| ||| |||||||    
T  6397940 taaaggttggtttaccatagttatttggagttaaatttaacattcatg-atttatttggcaaacggagaaaaaaatgagggactaaaatgtaagttttat 6397842  T
Q  262 taattgtg 269  Q
    ||||||||    
T  6397841 taattgtg 6397834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 268
Target Start/End: Original strand, 8571494 - 8571681
Alignment:
Q  83 aatccaatgatcattcttttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatag 182  Q
    ||||||||| ||||||||||       || ||||||| ||| ||||| ||||  ||||| | || |||||||||| | | ||||  ||| ||||||||||    
T  8571494 aatccaatggtcattctttttaagaaacagatcaaacagtttaaattaaaaagtttaataaggtatatggtggaccatttttaaagttggtccaccatag 8571593  T
Q  183 acatttggg-ttaaacttaacat-cgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||||||||| ||||||||||||  | | |||||||||||  |||| ||| ||||| ||| ||||  ||||||||||||||||||||||    
T  8571594 acatttggggttaaacttaacagactagggatttatttggtaaacggagaaaaaaatgaaggaccaaaacgtacgttttattaattgt 8571681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 26697801 - 26697894
Alignment:
Q  173 tccaccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||| ||||||||| ||||||||||||   | ||||||||| ||||||  || |||||||||||||||| ||||||||||||||||||||    
T  26697801 tccaccataaacatttggggttaaacttaacaatta-ggatttattcgacaaaaggaagaaaaagtgagggactaaaacgtacgttttattaatt 26697894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9854677 - 9854865
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctt 100  Q
    ||||||||||| ||||||||| ||||||| |||| | ||||||| ||||||| |||||||| ||||||||| |||  || | |||||||||| | |||||    
T  9854677 aagaagagtgaagaagaagataaagaaaa-ggaggattaattagttgttgttgactcaccgtaagataaaacacacatgcgtaatccaatgacccttctt 9854775  T
Q  101 ttnnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    ||        | |||||| |||| |||||  || |||||||    |||||||||||| ||||||||  ||| |||||||||||||||||||    
T  9854776 ttaaaaaaa-aaatcaaatggtttaaattagaagaattaataggatctatggtggaccactcttaaagttggtccaccatagacatttggg 9854865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 22551214 - 22551058
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaagga 211  Q
    ||||||||||| |||||  |||| ||||| | || |||||||||  ||| ||||| ||  ||||||||||| ||||||| ||||||||||||    ||||    
T  22551214 atcaaacggtttaaattacaaaatttaataaggtttatggtggatcacttttaaggtttgtccaccatagagatttggggttaaacttaacaatccagga 22551115  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||| ||||  ||| ||||||||||||||  |||  ||||||||||||||||||    
T  22551114 tttatttggcaaatggag-aaaaagtgagggaccaaaagatacgttttattaattgtg 22551058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 38696516 - 38696407
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    |||||| ||||||||||  |||||||||| |  |||||||||||| ||| ||||| ||| || ||||||||||||| ||||||||||||| | | | |||    
T  38696516 atcaaagggttaaaattataaaaattaattagatctatggtggaccacttttaaggttggtctaccatagacatttagggttaaacttaatagcaaggga 38696417  T
Q  212 tttatttgac 221  Q
    ||||||||||    
T  38696416 tttatttgac 38696407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 8570229 - 8570170
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||||||||||| |||||||||  |||||||||||||  ||||||||||||||||||||||    
T  8570229 ggatttatttggcaaacagagacaaaagtgagggaccaaaacgtacgttttattaattgt 8570170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 13197964 - 13198006
Alignment:
Q  227 gaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  13197964 gaggaaaaagtgagggacttaaacgtaccttttattaattgtg 13198006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 32797341 - 32797189
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatt--tat 216  Q
    |||||||||| | ||||||||| | ||||| | || || | | ||||| |||||||| ||||||||||||| ||||||||||||  |   |  ||  |||    
T  32797341 ggttaaaattaacaaaattaataaggtctacgatgaaccatttttaaggttgatccatcatagacatttggagttaaacttaacggccgcgatttattat 32797242  T
Q  217 ttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||  |||| ||||||||  |||||||||||||||||||||||||||||||||    
T  32797241 ttggtaaacggaggaaaacctgagggacttaaacgtacgttttattaattgtg 32797189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 28418916 - 28418860
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  28418916 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaatt 28418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 28420180 - 28420236
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||  ||||||||||||    
T  28420180 gatttatttgacaaacggaggaaaaaatgagggactaaaacgtgtgttttattaatt 28420236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 14840804 - 14840915
Alignment:
Q  110 catatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaa 208  Q
    |||||||||||||| ||||| ||||| ||||| |   ||||||||||  ||| ||||  ||| ||||||||||||||||| |||||||||||| | |||     
T  14840804 catatcaaacggtttaaattaaaaaatttaataagaactatggtggatcacttttaatgttggtccaccatagacatttgtggttaaacttaagaacgag 14840903  T
Q  209 ggatttatttga 220  Q
     |||||||||||    
T  14840904 agatttatttga 14840915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 24192571 - 24192662
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca 203  Q
    |||||||||||  |||| ||| |||||||    |||||||||||| ||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  24192571 atcaaacggttttaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccatagacatttagggttaaagttaaca 24192662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 30786885 - 30786810
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt 188  Q
    ||||||||||||||||| | ||||||||| | || |||| ||||| ||| ||||  ||||||||||||||||||||    
T  30786885 atcaaacggttaaaattaacaaaattaataaggtttatgatggaccacttttaaagttgatccaccatagacattt 30786810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 43202411 - 43202226
Alignment:
Q  4 aagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattctttt- 102  Q
    |||||||||||||||||||||| ||||||| || ||||||   |||||| |||||||  |||||| |||||| |||   ||||||||| ||||||||||     
T  43202411 aagagtgaggaagaagatgaag-aaagggaaaattaatta---gttgttgactcaccataagatagaatacacctgcataatccaatggtcattctttta 43202316  T
Q  103 -nnnnnnncatatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
             | ||||||| ||| ||||||||| || ||||    |||||||||||| ||||||||| ||||||||| ||||| |||||||    
T  43202315 aaaaaaaaaaaatcaaacagtttaaatttaaataactaataggatctatggtggaccactcttaaggttgatccactatagatatttggg 43202226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 212684 - 212758
Alignment:
Q  177 ccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    ||||||||||||||| ||||| |||||| | |  ||||||||||||||||  |||||||||||||||||| ||||    
T  212684 ccatagacatttggggttaaagttaacacccatagatttatttgacaaacgaaggaaaaagtgagggactaaaac 212758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 239570 - 239496
Alignment:
Q  177 ccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    ||||||||||||||| ||||| |||||| | |  ||||||||||||||||  |||||||||||||||||| ||||    
T  239570 ccatagacatttggggttaaagttaacacccatagatttatttgacaaacgaaggaaaaagtgagggactaaaac 239496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 726307 - 726381
Alignment:
Q  177 ccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    ||||||||||||||| ||||| |||||| | |  ||||||||||||||||  |||||||||||||||||| ||||    
T  726307 ccatagacatttggggttaaagttaacacccatagatttatttgacaaacgaaggaaaaagtgagggactaaaac 726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 792925 - 792851
Alignment:
Q  177 ccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    ||||||||||||||| ||||| |||||| | |  ||||||||||||||||  |||||||||||||||||| ||||    
T  792925 ccatagacatttggggttaaagttaacacccatagatttatttgacaaacgaaggaaaaagtgagggactaaaac 792851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 798808 - 798882
Alignment:
Q  177 ccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaac 250  Q
    ||||||||||||||| ||||| |||||| | |  ||||||||||||||||  |||||||||||||||||| ||||    
T  798808 ccatagacatttggggttaaagttaacacccatagatttatttgacaaacgaaggaaaaagtgagggactaaaac 798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 26696645 - 26696583
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||| ||||  ||||||||||||||||||  ||| ||| |||||||||||||||    
T  26696645 aaggatttatttggcaaatggaggaaaaagtgagggaccaaaatgtatgttttattaattgtg 26696583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 17455252 - 17455147
Alignment:
Q  116 aaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggattt 214  Q
    |||||||| ||||| ||| ||||||| |  |||||||||||| ||| ||||||||| || | |||||| |||||  |||||| |||||||  ||||||||    
T  17455252 aaacggttcaaattaaaataattaataagatctatggtggaccacttttaagattggtctagcatagatatttgaagttaaagttaacataaaaggattt 17455153  T
Q  215 atttga 220  Q
    ||||||    
T  17455152 atttga 17455147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 6398503 - 6398559
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||||||| ||||||||| ||||||||| |||||   ||||||||||||    
T  6398503 gatttatttgacaaacggaggaaaaaatgagggactaaaacgcttgttttattaatt 6398559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 29103598 - 29103538
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||  ||| | ||||||||| ||||||||| ||| |||||||||||||||||||    
T  29103598 ggatttatttagcaatcggaggaaaaaatgagggactcaaatgtacgttttattaattgtg 29103538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 10669386 - 10669461
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggatttatttga 220  Q
    |||||||||||| ||||||||| ||| | ||||||||||||||| ||||||| |||||| | ||||| || |||||    
T  10669386 tctatggtggaccactcttaaggttggttcaccatagacatttgaggttaaagttaacagccaaggacttttttga 10669461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 44076269 - 44076428
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaacatcgaa 208  Q
    |||||| |||| ||||| ||||||||||| |  | |||||||||  | | ||||  ||| ||||||||||||||    | |||||||||||||| |  |     
T  44076269 atcaaatggtttaaattaaaaaaattaataagatttatggtggatcatttttaatgttgttccaccatagacatcatttggggttaaacttaac-tgtag 44076367  T
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| ||||||||| ||||| ||  |||  ||||||||||||||||||    
T  44076368 ggatttatttggcaaacggaggaaaaattgaggcaccaaaagatacgttttattaattgtg 44076428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 13117638 - 13117680
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    ||||||||||| |||||||||||||| |||||||||| |||||    
T  13117638 ggatttatttggcaaacagaggaaaatgtgagggactaaaacg 13117680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 13116530 - 13116381
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaaca-tcgaaggatttatt 217  Q
    |||||||||| | |||| ||||   ||||| | ||||| ||||| ||||||| || |  |||||||||||| |||||| |||||| |||  |||||||||    
T  13116530 ggttaaaattaacaaaagtaatagggtctacgatggaccactctgaagattggtctattatagacatttggagttaaagttaacagtcg--ggatttatt 13116433  T
Q  218 tgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    || ||||| |||||||| |||| ||||| |||||    ||||||||||||||    
T  13116432 tggcaaacggaggaaaatgtgaaggactaaaacgccacttttattaattgtg 13116381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 63039 - 63178
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||  |||||||||||||   | |||    
T  63039 atcaaacggttaaaatttaaaaaattaatgaagtttatggtggaccattcttaagattgatccatcatagacatttgaagttaaacttaacagtcaggga 63138  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    |||||||| ||||| ||| |||| |||||||||| |||||    
T  63139 tttatttggcaaacggagaaaaatgtgagggactaaaacg 63178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 23443268 - 23443519
Alignment:
Q  14 aagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatcattcttttnnnnnnncata 113  Q
    |||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||||||| ||||  |||  |||||||||  ||||       ||||    
T  23443268 aagaaggtgaagaaa-gggagaaataattaggtgtttttgactcaccgtaagataaaatacacctgtataattgaatgatcatctttttaaaaaaacata 23443366  T
Q  114 tcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg--ttaaacttaacatcgaagga 211  Q
    ||||  |||| ||||| ||||  || || | ||||||||||||| ||| ||||||||||| ||| |||||||||||||  |||||||||||| | || ||    
T  23443367 tcaag-ggtttaaattaaaaattttcataaggtctatggtggactacttttaagattgattcacaatagacatttgggggttaaacttaacacc-aatga 23443464  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||| |||||||| |||||  ||| ||||||||| ||||||||||||||||    
T  23443465 tttatttggcaaacagaagaaaagatgaaggacttaaaggtacgttttattaatt 23443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13621237 - 13621147
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  13621237 aagaaaagtgaggaagaagatgaagaaa-gggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatga 13621147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 49380019 - 49379929
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  49380019 aagaaaagtgaggaagaagatgaagaaa-gggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatga 49379929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 42685084 - 42684934
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagga 211  Q
    ||||||||||| ||||| ||||| ||||| | || |||||||||| ||||||||| ||| | |||||||||||||| |||||||||||||||   |||||    
T  42685084 atcaaacggtttaaattaaaaaatttaataaggtttatggtggaccactcttaagcttggttcaccatagacatttggggttaaacttaacagtcaagga 42684985  T
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttatt 262  Q
    ||||||||  ||||| || ||||| ||||||||| ||||||  ||||||||    
T  42684984 tttatttggtaaacatagaaaaaaatgagggactaaaacgtcagttttatt 42684934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 38242423 - 38242581
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat---ttgggttaaacttaacatcgaag 209  Q
    ||||||||||| ||||| ||| |||||||  | | |||||||||| ||||||||| ||| ||||||||||||||   ||| ||||||||||||   || |    
T  38242423 atcaaacggtttaaattaaaataattaatagaatttatggtggaccactcttaaggttggtccaccatagacatcatttgagttaaacttaactgtga-g 38242521  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| ||||||||  ||||||||||||||  ||| |||||||||||||||||||    
T  38242522 gatttatttggcaaacagataaaaaagtgagggaccaaaaggtacgttttattaattgtg 38242581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 40364465 - 40364373
Alignment:
Q  175 caccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||| ||||| ||| ||||| |||||||||||||||||| |||||||||||    
T  40364465 caccatagacattttaggttaaacttaacaccgaaggatttatttggcaaacggagaaaaaaatgagggacttaaacgtacattttattaatt 40364373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 53194779 - 53194932
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattga-tccaccatagacatttgg-gttaaacttaacatcgaagg 210  Q
    |||||| |||||||||  ||||||||||||||||||||||||||| | |||  |   ||| |||||||||||||||| | |||||||||||||   | ||    
T  53194779 atcaaatggttaaaata-aaaaaattaatgaagtctatggtggacta-tctataatgtgagtccaccatagacattttgagttaaacttaacagacatgg 53194876  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||| |||| |||||||||||||||||||  ||||||||||||||||||||    
T  53194877 atttatttggcaaatagaggaaaaagtgagggaccaaaacgtacgttttattaatt 53194932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 268
Target Start/End: Original strand, 34819225 - 34819348
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagg 241  Q
    |||||||||||| ||||||||| ||||||||| ||||||||    | ||||||||||||||| | ||||| | ||||| ||||||||| ||||||||| |    
T  34819225 tctatggtggaccactcttaaggttgatccactatagacatcatttggggttaaacttaacagc-aaggact-atttggcaaacagag-aaaaagtgaag 34819321  T
Q  242 gacttaaacgtacgttttattaattgt 268  Q
    |||||||||||||||||||||||||||    
T  34819322 gacttaaacgtacgttttattaattgt 34819348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 53420525 - 53420368
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacat-cgaagg 210  Q
    ||||||| ||| ||||| ||||  ||||| | ||||||||||||  ||| ||||  ||| ||||||||||||||||| |||||||||||| |  | | ||    
T  53420525 atcaaacagtttaaattaaaaagtttaataaggtctatggtggatcacttttaaagttggtccaccatagacatttgtggttaaacttaatagactaggg 53420426  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    |||||||||| |||| ||| ||||||||||||||  ||||||||||||||||||||||    
T  53420425 atttatttgataaacggagaaaaaagtgagggaccaaaacgtacgttttattaattgt 53420368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 41544773 - 41544716
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  41544773 ggatttatttggcaaacagaggaaaaagtgagggacttaaacgtacgttatattaatt 41544716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 38241051 - 38240957
Alignment:
Q  175 caccatagacatttgg-gttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||||||||| ||||||||||||| |   ||||||||||| ||||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  38241051 caccatagacatttggagttaaacttaacagccg-ggatttatttggcaaacggaggaaaatctgaaggacttaaacgtacgttttattaattgtg 38240957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 53421766 - 53421825
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  53421766 ggatttatttggcaaacagagaaaaaagtgagggaccaaaacgtacgttttattaattgt 53421825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 53614213 - 53614338
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacattt----gggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagg 241  Q
    |||||||||||| |||||||||  ||||||||||||||||||     ||||||||||||||  |   ||||||||||| |||| ||||||||| ||||||    
T  53614213 tctatggtggaccactcttaaggatgatccaccatagacattatttggggttaaacttaacgcct--ggatttatttggcaaatagaggaaaatgtgagg 53614310  T
Q  242 gacttaaacgtacgttttattaattgtg 269  Q
    |||| |||||   |||||||||||||||    
T  53614311 gactaaaacgccagttttattaattgtg 53614338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 270
Target Start/End: Original strand, 35372075 - 35372224
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgggttaaacttaacatcgaaggatttatttg 219  Q
    |||||||||| | ||||||||| | ||||| | ||||| ||| |||| |||| |||| ||||||||||||   | || ||||||   |||||||||||||    
T  35372075 ggttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtccaacatagacatttgaagttaagttaacagt-aaggatttatttg 35372173  T
Q  220 acaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
     |||||||||||||| |||||||||| |||||    |||||||||||||||    
T  35372174 gcaaacagaggaaaaggtgagggactaaaacgccatttttattaattgtga 35372224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 37736089 - 37736147
Alignment:
Q  212 tttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    |||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  37736089 tttatttggcaaacggagaaaaaagtgagggactaaaacgtacgttttattaattgtga 37736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 18458663 - 18458722
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| ||||| ||||||||||||||||||| ||||| | |||||||||||||||    
T  18458663 gatttatttggcaaacggaggaaaaagtgagggactaaaacgcaagttttattaattgtg 18458722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 3208658 - 3208538
Alignment:
Q  148 tatggtggacaactcttaagattgatccaccataga--catttggg-ttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggac 244  Q
    |||||||||| ||||||||| ||| |||||||||    |||||||| |||||||||||    ||||||||||||||||||| ||||||||| | |||||     
T  3208658 tatggtggaccactcttaaggttggtccaccataatatcatttggggttaaacttaacggt-aaggatttatttgacaaacggaggaaaaaataagggat 3208560  T
Q  245 ttaaacgtacgttttattaatt 266  Q
      ||||||||||||||||||||    
T  3208559 caaaacgtacgttttattaatt 3208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 18197258 - 18197198
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| ||||||||| ||||||||  ||| |||||||||||||||||||    
T  18197258 ggatttatttggcaaacggaggaaaaaatgagggaccaaaaggtacgttttattaattgtg 18197198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 50809531 - 50809475
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  50809531 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaatt 50809475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 50866331 - 50866387
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  50866331 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaatt 50866387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 54110083 - 54110154
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaata 73  Q
    |||||||||||||| |||||||||| |||| ||||| ||||||| ||||||| |||||||  |||||||||||    
T  54110083 aagaagagtgaggatgaagatgaag-aaagagagaattaattagttgttgttgactcaccataagataaaata 54110154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 12106687 - 12106629
Alignment:
Q  207 aaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaat 265  Q
    |||||||||||||| |||| ||| ||||||||||||||  ||| |||||||||||||||    
T  12106687 aaggatttatttgataaacggagaaaaaagtgagggaccaaaatgtacgttttattaat 12106629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 42686151 - 42686209
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    |||||||||||||||||||| ||||||||||||||| ||| |   ||||||||||||||    
T  42686151 gatttatttgacaaacagagaaaaaagtgagggactaaaatgcctgttttattaattgt 42686209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 18442454 - 18442303
Alignment:
Q  115 caaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaaggatt 213  Q
    |||| |||||||||| || || ||||| | ||||||||||||| |    |||  ||| |||||||||||||||| ||||||||||||||| | | | |||    
T  18442454 caaagggttaaaattgaagaagttaataaggtctatggtggactatcgataatgttggtccaccatagacatttggggttaaacttaacaac-atgaatt 18442356  T
Q  214 tatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||| ||   |||||||||| ||| ||||| ||||||  |||||||||||||||    
T  18442355 tatttggca---agaggaaaaaatgatggactaaaacgtgggttttattaattgtg 18442303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 19487528 - 19487377
Alignment:
Q  115 caaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaaggatt 213  Q
    |||| |||||||||| || || ||||| | ||||||||||||| |    |||  ||| |||||||||||||||| ||||||||||||||| | | | |||    
T  19487528 caaagggttaaaattgaagaagttaataaggtctatggtggactatcgataatgttggtccaccatagacatttggggttaaacttaacaac-atgaatt 19487430  T
Q  214 tatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||| ||   |||||||||| ||| ||||| ||||||  |||||||||||||||    
T  19487429 tatttggca---agaggaaaaaatgatggactaaaacgtgggttttattaattgtg 19487377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 53624366 - 53624427
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||||| ||||| ||| |||||||||| |||  ||| ||||||||||||||||||||    
T  53624366 ggatttatttggcaaaccgagaaaaaagtgagtgaccaaaatgtacgttttattaattgtga 53624427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 37735416 - 37735360
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||||||||  || ||||| ||||||||| |||| |||||||||||||||    
T  37735416 gatttatttgacaaacgaagaaaaaaatgagggactaaaacatacgttttattaatt 37735360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44602842 - 44602913
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaata 73  Q
    |||||||||||||| |||||||||| || | ||||| ||||||| ||||||| |||||| | |||||||||||    
T  44602842 aagaagagtgaggatgaagatgaag-aaggagagaattaattagttgttgttgactcactgtaagataaaata 44602913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 50810840 - 50810896
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||||||||| ||||||||| ||||||  ||||||||||||    
T  50810840 gatttatttggcaaacggaggaaaaaatgagggactaaaacgtgtgttttattaatt 50810896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 50865024 - 50864968
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||||||||| ||||||||| ||||||  ||||||||||||    
T  50865024 gatttatttggcaaacggaggaaaaaatgagggactaaaacgtgtgttttattaatt 50864968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 21074186 - 21074279
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactct-taagattgatccaccatagacattt--gggttaaacttaac 202  Q
    |||||||| |||||||||| ||||||||||| | ||||||||||||| | ||| |||  ||| ||||||||| ||||||  ||||||||||||||    
T  21074186 atatcaaagggttaaaattgaaaaaattaataaggtctatggtggacta-tctataatgttggtccaccatatacatttgggggttaaacttaac 21074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 40244385 - 40244237
Alignment:
Q  121 gttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatttatttg 219  Q
    ||||||||| | ||||||||| | ||||| | ||||| ||| ||||| ||| ||||||||||||| |||  |||||| |||||    ||  | |||||||    
T  40244385 gttaaaattaacaaaattaataaggtctacgatggaccacttttaagtttggtccaccatagacacttgaagttaaagttaactgtcaa--aattatttg 40244288  T
Q  220 acaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
     ||||| ||||||||  ||||||||  ||| ||||||||||||||||||||    
T  40244287 gcaaacggaggaaaatttgagggaccaaaatgtacgttttattaattgtga 40244237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 44182391 - 44182332
Alignment:
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||| ||||| | ||||||||||| ||||| ||||||  ||||||||||||||||    
T  44182391 atttatttggcaaactgtggaaaaagtgaaggactaaaacgtgagttttattaattgtga 44182332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 20288192 - 20288249
Alignment:
Q  173 tccaccatagacatttgg-gttaaacttaacatcgaaggatttatttgacaaacagag 229  Q
    |||||||||||||||||| |||||||||||||   | ||||||||||||| |||||||    
T  20288192 tccaccatagacatttggagttaaacttaacagtcagggatttatttgactaacagag 20288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 36176512 - 36176572
Alignment:
Q  210 gatttatttgacaaacagagg-aaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| |||||||||| ||||| ||||||||  |||| ||| ||||||||||||||    
T  36176512 gatttatttggcaaacagaggaaaaaaatgagggaccaaaacatacattttattaattgtg 36176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 43034411 - 43034537
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttg---ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgaggg 242  Q
    |||||||||||| ||||||||  |||||||||||||||||||||   |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  43034411 tctatggtggaccactcttaaagttgatccaccatagacatttgagaggttaaacttaacagcgaag-atttatttgacaaacggaggaaaaagtgaggg 43034509  T
Q  243 acttaaacgtacgttttattaattgtga 270  Q
    ||  ||| ||||||||||||||||||||    
T  43034510 accaaaaggtacgttttattaattgtga 43034537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 43033254 - 43033133
Alignment:
Q  148 tatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggactt 246  Q
    |||||||||| ||||||||| ||| || |||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||      
T  43033254 tatggtggaccactcttaaggttggtctaccatagacatttgaggttaaacttaacatcga-ggatttatttggcaaacggaggaaaaagtgagggacca 43033156  T
Q  247 aaacgtacgttttattaattgtg 269  Q
    ||| |||||||||||||||||||    
T  43033155 aaaggtacgttttattaattgtg 43033133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 269
Target Start/End: Original strand, 32470491 - 32470640
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaacatcgaaggatttattt 218  Q
    |||||||||| | ||||||||| | ||||| | ||||| | | ||||| || ||||||||||||||||||| ||||||||||||| |   ||||||||||    
T  32470491 ggttaaaattaacaaaattaataaggtctacgatggaccatttttaaggtttatccaccatagacatttggagttaaacttaacagccg-ggatttattt 32470589  T
Q  219 gacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||| ||||||||  ||||| |||||||||||||||||||||||||||    
T  32470590 gacaaacggaggaaaacatgaggaacttaaacgtacgttttattaattgtg 32470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 11316120 - 11315984
Alignment:
Q  133 aaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaaggatttatttgacaaacagagga 231  Q
    ||||||||| | ||||| ||||||| | | ||||| ||||||||||||||||||||||  |||||||||||| |   ||||||||||| ||||| |||||    
T  11316120 aaaattaataaggtctacggtggaccatttttaaggttgatccaccatagacatttggaattaaacttaacagccg-ggatttatttggcaaacggagga 11316022  T
Q  232 aaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||  |||||||||||||||||||||||||||||||||    
T  11316021 aaacctgagggacttaaacgtacgttttattaattgtg 11315984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4920858 - 4920950
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatgatc 94  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||| ||||||||||||| ||| | ||||||||||||    
T  4920858 aagaagagtgaggaagaagatgaa-aaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatgatc 4920950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 17459362 - 17459304
Alignment:
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17459362 atttatttggcaaacggaggaaaaagtgagggacttaaacgtacgttttattaattgtg 17459304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28611052 - 28611142
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||  ||||||||||||| ||| | ||| ||||||    
T  28611052 aagaaaagtgaggaagaagatgaagaaa-gggagaaataattaagtgttgttgactcaccataagataaaatacacctgcgtaattcaatga 28611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 29219595 - 29219436
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagaca----tttgggttaaacttaaca-tcga 207  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||| ||||||||| |||||||||||||    || ||||||||||||||| | |     
T  29219595 atcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacagttg- 29219497  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  29219496 -ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtg 29219436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 29332894 - 29332735
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagaca----tttgggttaaacttaaca-tcga 207  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||| ||||||||| |||||||||||||    || ||||||||||||||| | |     
T  29332894 atcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacagttg- 29332796  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  29332795 -ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtg 29332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 28562718 - 28562871
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactct-taagattgatccaccatagacatttggg-ttaaacttaaca-tcgaag 209  Q
    |||||| ||||||||||  |||| ||||| | ||||||||||||| | ||| |||  ||| ||||||||| | ||||||| |||||||||||| ||   |    
T  28562718 atcaaagggttaaaattggaaaatttaataaggtctatggtggacta-tctataatgttggtccaccatatatatttgggattaaacttaacagtct--g 28562814  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||    
T  28562815 gatttatttgacaaacggaggaaaaagtgagggaccaaaaggtatgttttattaatt 28562871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 12359620 - 12359744
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagaca-tttgggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggac 244  Q
    |||||||||||  ||||||| ||||||||||||||||||| ||  ||||||| |||||| | | ||||||||||| | |||| |||||||| ||||||||    
T  12359620 tctatggtggatcactcttacgattgatccaccatagacacttaaggttaaagttaacagctacggatttatttggcgaacaaaggaaaaaatgagggac 12359719  T
Q  245 ttaaacgtacgttttattaattgtg 269  Q
      |||||    ||||||||||||||    
T  12359720 caaaacgccaattttattaattgtg 12359744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 28561517 - 28561418
Alignment:
Q  173 tccaccatagacatttggg-ttaaacttaaca-tcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtga 270  Q
    ||||||||||| ||||| | |||||||||||| || ||| |||||||||||||||  ||||||| |||||||||  |||  |||||||||||||||||||    
T  28561517 tccaccatagatatttgagattaaacttaacagtcaaagaatttatttgacaaacgtaggaaaaggtgagggaccaaaagatacgttttattaattgtga 28561418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 34513461 - 34513539
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    ||||||||||| ||||| ||||||||||| | ||||||||||||  ||||||||| ||| || |||||| |||||||||    
T  34513461 atcaaacggtttaaattaaaaaaattaataaggtctatggtggatcactcttaaggttggtcaaccatatacatttggg 34513539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 18616912 - 18617071
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagaca----tttgggttaaacttaaca-tcga 207  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||| |||||| || |||||||||||||    || ||||||||||||| | | |     
T  18616912 atcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagactggtccaccatagacatcatttggggttaaacttaatagttg- 18617010  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  18617011 -ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtg 18617071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 11317308 - 11317433
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacat---ttgggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgaggg 242  Q
    |||||||| ||| ||||||||| ||| || |||||||||||   ||| ||||||||||||   || ||||||||||| ||||| ||||||||| ||||||    
T  11317308 tctatggtagaccactcttaaggttggtctaccatagacatcatttgagttaaacttaactgtga-ggatttatttgccaaacggaggaaaaattgaggg 11317406  T
Q  243 acttaaacgtacgttttattaattgtg 269  Q
    ||  |||  || |||||||||||||||    
T  11317407 accaaaatatatgttttattaattgtg 11317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 17460613 - 17460749
Alignment:
Q  133 aaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaaca-tcgaaggatttatttgacaaacagagg 230  Q
    ||||||||| | ||||| | | ||| ||| ||||||||| ||||||||||||||||   |||||| |||||  |||  |||||||||||  |||| ||||    
T  17460613 aaaattaataaggtctacgatagaccacttttaagattggtccaccatagacatttaaagttaaagttaacggtcg--ggatttatttgggaaacggagg 17460710  T
Q  231 aaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||  ||||||||  |||||||||||||||||||||||    
T  17460711 aaaatttgagggaccaaaacgtacgttttattaattgtg 17460749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 34464176 - 34464085
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaaca 203  Q
    ||||||| ||| ||||| |||||  |||| | ||||||||||||| ||||||||| ||| || || |||||||||| |||||||||||||||    
T  34464176 atcaaacagtttaaattaaaaaatctaataaggtctatggtggaccactcttaaggttggtcaacgatagacatttggggttaaacttaaca 34464085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 34513008 - 34512930
Alignment:
Q  125 aaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgggttaaacttaaca 203  Q
    ||||| ||||| ||||| | || |||||||||| ||||||| | ||||||||||||| |||||  ||||||||||||||    
T  34513008 aaattaaaaaatttaataaggtatatggtggaccactcttatggttgatccaccatatacattaaggttaaacttaaca 34512930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 34467716 - 34467607
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaag 209  Q
    ||||||||| ||| ||||| ||||| ||||| | || |||||||||| ||||||||| ||  |||| ||||||||||||  |||||||| |||| | | |    
T  34467716 atatcaaacagtttaaattaaaaaacttaataaggtttatggtggaccactcttaaggtttgtccatcatagacatttgaagttaaactcaacagccagg 34467617  T
Q  210 gatttatttg 219  Q
    ||||||||||    
T  34467616 gatttatttg 34467607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 34469068 - 34469009
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| |||||||| ||||| |||||||||| ||||||   ||||||||||||||    
T  34469068 gatttatttggcaaacagaagaaaatgtgagggactaaaacgtcatttttattaattgtg 34469009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 32469360 - 32469199
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat---ttgggttaaacttaacatcga 207  Q
    |||||||| |||| ||||| ||| |||||||    ||||| |||||| ||||||||  ||| ||||||||| ||||   ||| |||||||||||| |  |    
T  32469360 atatcaaagggtttaaattaaaataattaataggatctatagtggaccactcttaaagttggtccaccatatacataatttgagttaaacttaac-tata 32469262  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtac--gttttattaattgtg 269  Q
    |||||||||||| ||| | ||||||||||||| ||||  ||| ||||  |||||||||||||||    
T  32469261 aggatttatttggcaa-cggaggaaaaagtgaaggaccaaaaggtacacgttttattaattgtg 32469199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 35903715 - 35903607
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcgaagga 211  Q
    ||||||||||| ||||| ||| | |||||    |||||||||||| ||||| || | | ||| | |||||||||||||| |||||||||||| | |||||    
T  35903715 atcaaacggtttaaattaaaatatttaataggatctatggtggaccactctaaa-agtaatctatcatagacatttggggttaaacttaacagccaagga 35903617  T
Q  212 tttatttgac 221  Q
    ||||||||||    
T  35903616 tttatttgac 35903607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 2277377 - 2277421
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggac 157  Q
    |||||| |||||||||| ||||||||||| | |||||||||||||    
T  2277377 atcaaagggttaaaattgaaaaaattaataaggtctatggtggac 2277421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 20493481 - 20493525
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggac 157  Q
    |||||||  ||||||||||||||||||||| ||||||| ||||||    
T  20493481 atcaaacaattaaaatttaaaaaattaatggagtctatagtggac 20493525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 26205218 - 26205142
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg 189  Q
    |||||| |||||||||||||||||||||| | |  |||||||||| ||| |||||  || | |||| ||||||||||    
T  26205218 atcaaatggttaaaatttaaaaaattaataaggcatatggtggaccacttttaagtatggttcaccttagacatttg 26205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 36011648 - 36011704
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||| ||||| ||  ||||| ||||||||| |||||||| |||||||||||    
T  36011648 gatttatttggcaaacggattaaaaaatgagggactaaaacgtacattttattaatt 36011704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 124143 - 124020
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttggg-ttaaacttaacatcg-aaggatttatttgacaaacagaggaaaaagtgaggga 243  Q
    |||||||||||| ||||||||| ||| ||||||||||| ||||||| |||||||||||  || ||||||||||||| |||||||||||||||||||||||    
T  124143 tctatggtggaccactcttaaggttggtccaccatagatatttggggttaaacttaac--cgtaaggatttatttggcaaacagaggaaaaagtgaggga 124046  T
Q  244 cttaaacgtacgttttattaattgtg 269  Q
    |  ||| |||||||||||||||||||    
T  124045 ccaaaatgtacgttttattaattgtg 124020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 125138 - 125298
Alignment:
Q  113 atcaaacggttaaaatttaaaaaatt-aatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaacatcga 207  Q
    |||||| |||| ||||| |||||||| ||| | ||||||||||||| ||| ||||| ||| |||| |||| ||||    | ||||||||||||||  ||     
T  125138 atcaaagggtttaaattaaaaaaatttaataaggtctatggtggaccacttttaaggttggtccatcatatacatcatttggggttaaacttaac--cgt 125235  T
Q  208 -aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     |||||||||||| ||||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  125236 taggatttatttggcaaacggaggaaaaagtgagggaccaaaaggtacgttttattaattgtg 125298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 43481 - 43637
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaaca-tcga 207  Q
    ||||||||||| ||||| ||| |||||||    |||||||||||| ||||||||||||| ||||||||||||||    | ||||||||||||||  ||      
T  43481 atcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaagattggtccaccatagacatcacttggggttaaacttaaccgtc-- 43578  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  43579 aggacttatttggcaaacggaggaaaaagtgagggacttaaacatacgttttattaatt 43637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 32506952 - 32507072
Alignment:
Q  131 aaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaaggatttatttgacaaacagag 229  Q
    |||||||||||||||| |||||| ||| ||||||||| ||| ||||||||||| |||| |||||||||||||||   ||||||||||||| ||||| |||    
T  32506952 aaaaaattaatgaagtatatggtagaccactcttaaggttggtccaccatagatatttggggttaaacttaacagtcaaggatttatttggcaaactgag 32507051  T
Q  230 gaaaaagtgagggacttaaac 250  Q
     |||| |||||||||| ||||    
T  32507052 aaaaatgtgagggactaaaac 32507072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 11723104 - 11723014
Alignment:
Q  1 aagaagagtgaggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaatacatctgtgaaatccaatga 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||| |||||||| ||||| ||||||||||    
T  11723104 aagaaaagtgaggaagaagatgaagaaa-gggagaaataattaagtgttgttgactcaccgtaagagaaaatacacctgtgtaatccaatga 11723014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 23392425 - 23392265
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccataga--catttggg-ttaaacttaacatcga 207  Q
    ||||||||||||| ||||| ||| |||||||    |||||||||||| ||| ||||| |||||||||| |||   |||||||| |||||||||||||  |    
T  23392425 atatcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaaggttgatccaccttagcatcatttggggttaaacttaacattta 23392326  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
     ||||||||||| ||||| |||||||| ||||||||||||||||    ||||||||||||||    
T  23392325 -ggatttatttggcaaacggaggaaaaggtgagggacttaaacgccatttttattaattgtg 23392265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 6452453 - 6452573
Alignment:
Q  148 tatggtggacaactcttaagattgatccaccatagacattt-gggttaaactt-aacatcgaaggatttatttgacaaacagaggaaaaagtgagggact 245  Q
    |||||||||| ||||||||  ||||| ||| ||||| |||| ||||||||||| |||    ||||||||||||| ||||| ||||||||| |||||||||    
T  6452453 tatggtggaccactcttaaagttgatacactatagatattttgggttaaactttaacggtcaaggatttatttggcaaacggaggaaaaaatgagggact 6452552  T
Q  246 taaacgtacgttttattaatt 266  Q
     ||||||||||||||||||||    
T  6452553 caaacgtacgttttattaatt 6452573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 12669898 - 12669773
Alignment:
Q  146 tctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggac 244  Q
    |||||||||||| ||||||||| ||| ||||||||| ||||||| ||||||| ||||||   |  |||||||||  ||||| ||||||||||||| ||||    
T  12669898 tctatggtggaccactcttaaggttggtccaccatacacatttgaggttaaagttaacagttagagatttatttagcaaacggaggaaaaagtgacggac 12669799  T
Q  245 ttaaacgtacgttttattaattgtga 270  Q
    | |||| |  ||||||||||||||||    
T  12669798 taaaacttgagttttattaattgtga 12669773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 6452396 - 6452338
Alignment:
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||    
T  6452396 aggatttatttggcaaacggaggaaaaagtgagggactaaaacgtaccttttattaatt 6452338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 269
Target Start/End: Original strand, 23397270 - 23397419
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac-atcgaaggatttatt 217  Q
    |||||||||| | ||||||||| | || || ||||||| ||| ||||| ||| |||||||||||||||||  |||||| |||||  |||  |||||||||    
T  23397270 ggttaaaattaacaaaattaataaggtatacggtggactacttttaaggttggtccaccatagacatttgaagttaaatttaacggtcg--ggatttatt 23397367  T
Q  218 tgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    || ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  23397368 tggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtg 23397419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 32505876 - 32505773
Alignment:
Q  113 atcaaacggttaaaatttaaaaaatt-aatgaagtctatggtggacaactcttaagattgatccaccatagacattt-gggttaaacttaacatcgaagg 210  Q
    ||||||||||| ||| |||||||||| ||| | ||||||||||||| ||||||||  ||| ||||  |||||||||| ||||||||||||||| ||| ||    
T  32505876 atcaaacggtttaaacttaaaaaatttaataaggtctatggtggaccactcttaatgttg-tccattatagacatttggggttaaacttaacaccgatgg 32505778  T
Q  211 attta 215  Q
    |||||    
T  32505777 attta 32505773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 232285 - 232230
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  232285 ggatttatttggcaaacggaggaaaaagtgagggactaaaacgt--gttttattaatt 232230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 29380391 - 29380260
Alignment:
Q  120 ggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac-atcgaaggatttatt 217  Q
    |||||||||| | ||||||||| | ||||| | ||||| ||| ||||| ||||||||||||| |||||||  |||||| |||||  |||  |||||||||    
T  29380391 ggttaaaattaacaaaattaataaggtctacgatggactacttttaaggttgatccaccatatacatttgaagttaaaattaacggtcg--ggatttatt 29380294  T
Q  218 tgacaaacagaggaaaaagtgagggacttaaacg 251  Q
    || ||||| || ||||| |||||||||| |||||    
T  29380293 tggcaaacggaagaaaaggtgagggactaaaacg 29380260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 7311632 - 7311789
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccataga---catttgggttaaacttaacatcgaag 209  Q
    ||||||||||| ||||| ||| |||||||    | |||||||||| ||||||||| ||| | |||||||||   ||||||| ||||||||||| |   ||    
T  7311632 atcaaacggtttaaattaaaataattaataggatttatggtggaccactcttaaggttggttcaccatagacatcatttggattaaacttaac-tgtgag 7311730  T
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    |||||||||| |||| |||  ||||||| ||||||  ||| ||||| |||||||||||||    
T  7311731 gatttatttggcaaatagataaaaaagtaagggaccaaaaggtacg-tttattaattgtg 7311789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 27082168 - 27082209
Alignment:
Q  228 aggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  27082168 aggaaaaagtgagggacttaaacatactttttattaattgtg 27082209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 7310421 - 7310330
Alignment:
Q  175 caccatagacatttgg-gttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    |||||||||||||||| ||||||||||||| |  || |||||||||  |||| ||| ||||  ||| |||||||||| |||||||||||||||    
T  7310421 caccatagacatttggagttaaacttaacagccgag-atttatttggtaaacggagaaaaacctgaaggacttaaacatacgttttattaatt 7310330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 34024073 - 34024129
Alignment:
Q  213 ttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||||| |||||||||||||||||   ||| |||| ||||||||||||||    
T  34024073 ttatttgacaaacggaggaaaaagtgagggatcaaaatgtacattttattaattgtg 34024129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 27081034 - 27080976
Alignment:
Q  210 gatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    |||||||||  ||||| ||| ||||||||||||||||||| |||  |||||||||||||    
T  27081034 gatttatttcgcaaacggagaaaaaagtgagggacttaaatgtaaattttattaattgt 27080976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 15728878 - 15728825
Alignment:
Q  173 tccaccatagacatttg-ggttaaacttaacatcgaaggatttatttgacaaac 225  Q
    ||||||||||| ||||| |||||||||||||| |||| ||||||||||| ||||    
T  15728878 tccaccatagatatttgaggttaaacttaacaccgaaagatttatttgataaac 15728825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 17839144 - 17839204
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| |||||||| |||||||||| |||||    ||||||||||||||    
T  17839144 ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtg 17839204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 589 - 698
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaacatcgaagga 211  Q
    ||||||||||| ||||| ||||| ||||| | ||||||||||||| ||||||||| ||| ||||  ||| ||||||| |||||||||| |||   | |||    
T  589 atcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccattatatacatttgaggttaaacttgacaatcaggga 688  T
Q  212 tttatttgac 221  Q
    ||||||||||    
T  689 tttatttgac 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 54091 - 54250
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacat----ttgggttaaacttaaca-tcga 207  Q
    ||||||| ||| ||||| ||| |||||||    |||||||||||| ||| ||||| ||| ||||||||||||||    | |||||| |||||||| ||      
T  54091 atcaaacagtttaaattaaaataattaataggatctatggtggaccacttttaaggttggtccaccatagacatcatttggggttatacttaacagtc-- 54188  T
Q  208 aggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    | |||||||||| ||||| ||||||||  ||||||||  ||||| |||||||||||||||||    
T  54189 acgatttatttggcaaacggaggaaaatttgagggaccaaaacgcacgttttattaattgtg 54250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 52703 - 52643
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgtg 269  Q
    ||||||||||| ||||| ||| ||||  ||||||||  |||||||| ||||||||||||||    
T  52703 ggatttatttggcaaacggagaaaaatctgagggaccaaaacgtacattttattaattgtg 52643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 8099 - 8176
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttggg 191  Q
    ||||||||||| ||||| ||| |||||||  | |||||| |||||  |||||||| |||||||||||||||||||||||    
T  8099 atcaaacggtttaaattaaaataattaatataatctatgatggacc-ctcttaaggttgatccaccatagacatttggg 8176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 268
Target Start/End: Original strand, 109654 - 109809
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttgg-gttaaacttaaca-tcgaagg 210  Q
    |||||| |||||||||| | ||||||||| | ||||| | ||||| | | ||||| ||| ||||||||| |||||||  |||||| |||| | | |  ||    
T  109654 atcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccaccatatacatttgaagttaaagttaatagttg--gg 109751  T
Q  211 atttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaattgt 268  Q
    ||| ||||| ||||  ||| ||||||||||||||| ||| ||||||||||||||||||    
T  109752 attcatttggcaaattgagaaaaaagtgagggactaaaatgtacgttttattaattgt 109809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 108643 - 108567
Alignment:
Q  189 gggttaaacttaacatcgaaggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 266  Q
    ||||||||||||||  | ||||||||||||| ||||  ||||||||| |||||||   ||||||||||||||||||||    
T  108643 gggttaaacttaactgc-aaggatttatttggcaaatggaggaaaaaatgagggatcaaaacgtacgttttattaatt 108567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 18469 - 18535
Alignment:
Q  111 atatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccacc 178  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||| ||   ||| |||||||||||    
T  18469 atatcaaacggttatgatt-aaaaaattaatgaagtctatggtggactacctataatattgatccacc 18535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 18923 - 18868
Alignment:
Q  209 ggatttatttgacaaacagaggaaaaagtgagggacttaaacgtacgttttattaa 264  Q
    ||||||||||| ||||| ||| ||||||||||||||| |||| || ||||||||||    
T  18923 ggatttatttggcaaacggagtaaaaagtgagggactaaaacataagttttattaa 18868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 127637 - 127551
Alignment:
Q  117 aacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgatccaccatagacatttg-ggttaaacttaac 202  Q
    ||||||| ||||| |||| ||||||    |||||||||||| ||||||||| ||| | ||||||||||||||| ||||||| |||||    
T  127637 aacggtttaaattaaaaacattaataggatctatggtggaccactcttaaggttgtttcaccatagacatttgaggttaaagttaac 127551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 127739 - 127679
Alignment:
Q  12 ggaagaagatgaagaaaagggagaaataattaggtgttgtttactcaccgaaagataaaata 73  Q
    ||||||||||||||||| |||| |  ||||||| ||||||| |||||||| |||||||||||    
T  127739 ggaagaagatgaagaaa-gggaaagttaattagatgttgttgactcaccgtaagataaaata 127679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 1414 - 1375
Alignment:
Q  113 atcaaacggttaaaatttaaaaaattaatgaagtctatggt 153  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  1414 atcaaacggttaaaatt-aaaaaattaataaagtctatggt 1375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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