View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_low_2 (Length: 579)
Name: NF20502_low_2
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 42 - 519
Target Start/End: Original strand, 41848655 - 41849143
Alignment:
| Q |
42 |
gattatgagagactatagtgtgtgattcgattcaattcggaaaatatacactgactttatggatgactagtcttcacacagaccatctttaatggagtct |
141 |
Q |
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| T |
41848655 |
gattatgagagactatagtgtgtgattcgattc-----ggaaaatatacactgactttatggatgactagtctttacacagaccatctttaatggagtct |
41848749 |
T |
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| Q |
142 |
ccactttcaatcatannnnnnnacccacaatactcgaacttgagacattccaag---ttcaattcaacttgagctaatgtaatgttggtgtagtgggtga |
238 |
Q |
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| T |
41848750 |
ccactttcaatcatatttttttacccacaatactcgaacttgagacattccaagaagttcaattcaacttgagctaatgtaatgttggtgtagtgggtga |
41848849 |
T |
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| Q |
239 |
tggattgagaaaaaagcattgtattgcacatgatatttattatatgtctgctggtaaggtaattaggattggaggaatatgatgataaaggtggcaattg |
338 |
Q |
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| T |
41848850 |
tggattgagaaaaaagcattgcattgcacatgatatttattatatgtctgctggtaaggtaattaggattgggggaatatgatgataaaggtggcaactg |
41848949 |
T |
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| Q |
339 |
attatgggtttggaaggtgatggtcgagtgtatgattgctgttttctactcataagagggaataggattagtcaca----atattttaccttttgttttg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
41848950 |
attatgggtttggaaggtgatggtcgagtgtatgattgctgttttctactcataagagggaataggattagtgacaatatatattttaccttttgttttg |
41849049 |
T |
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| Q |
435 |
tttggcatgttaagctaaagagggg-aaaaaataaataatgttatgtaggat--------agagcacaattatacataagaacattgattaata |
519 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
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| T |
41849050 |
tttggcatgttaagctaaagaggggaaaaaaataaataatgttatgtaggatgaatttagataacacaattatacataagaacattgattaata |
41849143 |
T |
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