View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20502_low_3 (Length: 527)
Name: NF20502_low_3
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20502_low_3 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 2595 - 3104
Alignment:
| Q |
1 |
aagttagcaacttcgcatatatttagaccaacttcaaaatataatttttaccggactttggataacacaccgtgattctatcatactcatcgtcggtcca |
100 |
Q |
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| T |
2595 |
aagttagcaacttcgcatatatttagaccgactttaaaatactatttttgccgaactttggacaacacaccatgattctatcatactcatcgtcggacca |
2694 |
T |
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| Q |
101 |
gacatatacttaccaaataccaattacatcacatagtcaaatactactagaacttatttatacaactagttaatatccacgcgatcatctagaacaagac |
200 |
Q |
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| T |
2695 |
-acatatacttaccaaataccaattacatcacatagtcaaatactactagaacttatttatacaactagttaatatccacgtgaccatctagaattagaa |
2793 |
T |
|
| Q |
201 |
ctagaagtcacgtgagttacgattaaggtgaaacccagatgaaaaaccagacttaacagagaaaactccattccaaatctcagtaaaagctcttataata |
300 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794 |
ctagaaatcacgttagttacgattaaggtgaaacccagatgaaaaaccagacttaacagagaaaactccattccaaatctcagtaaaagctcttataata |
2893 |
T |
|
| Q |
301 |
atcccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcatctttagaatatatctcattctccaatatcatctgcaaca |
400 |
Q |
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| T |
2894 |
atcccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcatctttagaatatatctcattctccaatatcatctgcaaca |
2993 |
T |
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| Q |
401 |
ttgaatgtcgaaaatcaagataagggtcatcagaatctttctccacagctacaccttcatttccagctcttccaaatcctttcaatgatgatttctctga |
500 |
Q |
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| T |
2994 |
ttgaatgtcgaaaatcaagataagggtcatcagaatctttctccacagctactccttcatttccagctcttccaaatcctttcaatgatgatttctctga |
3093 |
T |
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| Q |
501 |
cccgaatgatg |
511 |
Q |
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| T |
3094 |
cccgaatgatg |
3104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 263 - 446
Target Start/End: Original strand, 42945693 - 42945876
Alignment:
| Q |
263 |
aaactccattccaaatctcagtaaaagctcttataataatcccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcatc |
362 |
Q |
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||||||||||||||||||||||||||||||| | ||||| |||||||| | | |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42945693 |
aaactccattccaaatctcagtaaaagctctaacaataacaccatgatggtaaggtgcattcagctgaagaaaacagttcaaaagctctctaaggtcatc |
42945792 |
T |
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| Q |
363 |
tttagaatatatctcattctccaatatcatctgcaacattgaatgtcgaaaatcaagataagggtcatcagaatctttctccac |
446 |
Q |
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| T |
42945793 |
tttagagtatatttcattctccaatatcatttgaagcatggaatgcctgaaatcaagataaggatcttcagaatctttctccac |
42945876 |
T |
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