View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20502_low_8 (Length: 342)

Name: NF20502_low_8
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20502_low_8
NF20502_low_8
[»] chr4 (9 HSPs)
chr4 (4-319)||(26270897-26271212)
chr4 (199-319)||(3110562-3110682)
chr4 (12-93)||(21496591-21496672)
chr4 (39-100)||(47892596-47892657)
chr4 (51-91)||(41246405-41246445)
chr4 (14-91)||(7424216-7424293)
chr4 (13-100)||(54069229-54069315)
chr4 (36-94)||(9076532-9076590)
chr4 (17-61)||(24531850-24531894)
[»] chr7 (4 HSPs)
chr7 (37-100)||(42281934-42281997)
chr7 (20-62)||(30777809-30777851)
chr7 (35-91)||(5361124-5361180)
chr7 (36-100)||(5854647-5854711)
[»] chr3 (3 HSPs)
chr3 (36-100)||(49895909-49895973)
chr3 (36-94)||(2373788-2373846)
chr3 (54-94)||(21873712-21873752)
[»] scaffold0110 (1 HSPs)
scaffold0110 (36-94)||(33173-33231)
[»] chr5 (4 HSPs)
chr5 (20-97)||(24993819-24993896)
chr5 (18-58)||(24917746-24917786)
chr5 (18-58)||(24993656-24993696)
chr5 (40-100)||(14731860-14731920)
[»] chr1 (3 HSPs)
chr1 (13-66)||(4117685-4117738)
chr1 (20-94)||(24143718-24143792)
chr1 (13-94)||(12241347-12241428)
[»] chr6 (1 HSPs)
chr6 (13-91)||(7145581-7145659)
[»] chr2 (1 HSPs)
chr2 (13-90)||(35225008-35225085)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 26270897 - 26271212
Alignment:
Q  4 ggaccgagggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagaccatct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26270897 ggaccgagggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagaccatct 26270996  T
Q  104 tcgttatttactcgnnnnnnnngtattgaaaatttaattattgcactatcgatgtatgtataccttttatgttcacagtaacagaaagggagaggtgaaa 203  Q
    |||||||| |||||        ||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||    
T  26270997 tcgttattcactcgttttttttgtattgaaaatttaattattgcactattgaggtgtgtatactttttatgttcacagtaacagaaagggagaggtgaaa 26271096  T
Q  204 cagtctctgaaaattttgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaaatttgt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26271097 cagtctctgaaaattttgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaaatttgt 26271196  T
Q  304 caaagtctgttttgtg 319  Q
    ||||||||||||||||    
T  26271197 caaagtctgttttgtg 26271212  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 3110682 - 3110562
Alignment:
Q  199 tgaaacagtctctgaaaattttgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaaa 298  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  3110682 tgaaacaatctctgaaaattctgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattttaagatttttgtcacaacattcaaa 3110583  T
Q  299 tttgtcaaagtctgttttgtg 319  Q
    |||||||||||||||||||||    
T  3110582 tttgtcaaagtctgttttgtg 3110562  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 21496591 - 21496672
Alignment:
Q  12 ggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttca 93  Q
    ||||||| |||||||||||| || |||||||||| ||||||||||||  ||| || ||| ||||||||||| ||||||||||    
T  21496591 ggattaacattttgcaattctaaggatcattttgaaatattgataatacgagtgactaggttgatacaatcctacaatttca 21496672  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 47892657 - 47892596
Alignment:
Q  39 cattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 100  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  47892657 cattttggaatatcgataatgtgagggattagattggtacaatcctacaatttcaaggacca 47892596  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 41246445 - 41246405
Alignment:
Q  51 ttgataatgtgagagattagattgatacaatcatacaattt 91  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  41246445 ttgataatgtgagggattagattgatacaatcatacaattt 41246405  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 7424293 - 7424216
Alignment:
Q  14 attaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 91  Q
    ||||| ||||||||||| ||  |||||||||| ||||||| |||||| ||||| ||| |||||||| || ||||||||    
T  7424293 attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttgatacagtcctacaattt 7424216  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 54069315 - 54069229
Alignment:
Q  13 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 100  Q
    |||||||||||||||||| ||| ||  ||||||||||||| ||||||| || |||||| |||| ||||   ||||||||||| |||||    
T  54069315 gattaatattttgcaatttcaaggaaaattttggaatattcataatgt-agggattaggttgagacaactgtacaatttcaaggacca 54069229  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 9076532 - 9076590
Alignment:
Q  36 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 94  Q
    |||||||||| |||||||||||||||||||| ||  || |||||| | |||||||||||    
T  9076532 gatcattttgaaatattgataatgtgagagactaagttaatacaaccttacaatttcaa 9076590  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24531894 - 24531850
Alignment:
Q  17 aatattttgcaattccaatgatcattttggaatattgataatgtg 61  Q
    ||||| |||||||||  ||||||||||| ||||||||||||||||    
T  24531894 aatatattgcaattcttatgatcattttagaatattgataatgtg 24531850  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 42281997 - 42281934
Alignment:
Q  37 atcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 100  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||| |||||    
T  42281997 atcattttgaaatattgataatgtgagagactagattgacacaattatacaatttcaaggacca 42281934  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 30777851 - 30777809
Alignment:
Q  20 attttgcaattccaatgatcattttggaatattgataatgtga 62  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||    
T  30777851 attttgcaatttcaatgttcattttgcaatattgataatgtga 30777809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 5361180 - 5361124
Alignment:
Q  35 tgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 91  Q
    ||||||||||| ||||| |||||| |||| || | ||||||||||||| ||||||||    
T  5361180 tgatcattttgaaatatcgataatatgagggactggattgatacaatcttacaattt 5361124  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 5854647 - 5854711
Alignment:
Q  36 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 100  Q
    ||||||||| ||||||||||||||| || || ||| ||| ||||||| ||||| ||||| |||||    
T  5854647 gatcattttagaatattgataatgtaagggactaggttgttacaatcctacaacttcaaggacca 5854711  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 49895909 - 49895973
Alignment:
Q  36 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 100  Q
    ||||||||||||||||||||||| || | ||||||  |||||||||| ||||||||||| |||||    
T  49895909 gatcattttggaatattgataatatgggggattagggtgatacaatcttacaatttcaaggacca 49895973  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 2373846 - 2373788
Alignment:
Q  36 gatcattttggaatattgataatgt-gagagattagattgatacaatcatacaatttcaa 94  Q
    ||||||||||||||||||||||||| |||| | || |||||||||||| |||||||||||    
T  2373846 gatcattttggaatattgataatgtggaga-actaaattgatacaatcttacaatttcaa 2373788  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 21873712 - 21873752
Alignment:
Q  54 ataatgtgagagattagattgatacaatcatacaatttcaa 94  Q
    ||||||||||||| ||||||||||||| | |||||||||||    
T  21873712 ataatgtgagagactagattgatacaaacctacaatttcaa 21873752  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 33173 - 33231
Alignment:
Q  36 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 94  Q
    |||||||||||||||| |||||||||| ||| |||||| ||||| || |||||||||||    
T  33173 gatcattttggaatatcgataatgtgaaagactagatttatacagtcctacaatttcaa 33231  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 24993819 - 24993896
Alignment:
Q  20 attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaaga 97  Q
    |||||| |||| ||| |||||||||||||||| ||||| ||| |||| ||| |||||| ||||  |||||||||||||    
T  24993819 attttgaaatttcaaagatcattttggaatatcgataaagtgggagactaggttgatataatcgaacaatttcaaaga 24993896  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 24917786 - 24917746
Alignment:
Q  18 atattttgcaattccaatgatcattttggaatattgataat 58  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24917786 atattttgcaattccagggatcattttggaatattgataat 24917746  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 24993696 - 24993656
Alignment:
Q  18 atattttgcaattccaatgatcattttggaatattgataat 58  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24993696 atattttgcaattccagggatcattttggaatattgataat 24993656  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 14731920 - 14731860
Alignment:
Q  40 attttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 100  Q
    |||||||||||| |||||||| || || || ||||| |||||| |||||||||||| ||||    
T  14731920 attttggaatatcgataatgtaagggactaaattgacacaatcttacaatttcaaaaacca 14731860  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 4117685 - 4117738
Alignment:
Q  13 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagaga 66  Q
    |||||| ||||| ||||||||| ||| ||||| |||||||||||||||||||||    
T  4117685 gattaacattttccaattccaaggataattttcgaatattgataatgtgagaga 4117738  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 24143718 - 24143792
Alignment:
Q  20 attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 94  Q
    ||||||||||| ||| ||||| |||  |||||||| ||||||| | | ||||||||||||||  |||||||||||    
T  24143718 attttgcaatttcaaagatcaatttataatattgaaaatgtgatatactagattgatacaattctacaatttcaa 24143792  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 12241428 - 12241347
Alignment:
Q  13 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 94  Q
    |||||| ||||||||||| |||  ||||||||  ||||| ||||||||||| || || |||||||||  | |||||||||||    
T  12241428 gattaaaattttgcaatttcaagaatcattttaaaatatcgataatgtgagggactacattgatacagccctacaatttcaa 12241347  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 7145581 - 7145659
Alignment:
Q  13 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 91  Q
    |||||||||||| |||||  |  ||||||||||||||||||||||| | ||||||||  |||| ||| || ||||||||    
T  7145581 gattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacacagtcctacaattt 7145659  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 35225008 - 35225085
Alignment:
Q  13 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatt 90  Q
    ||||||||| |||||||||||  || |||||||||||||| ||||||||   || ||| ||||||||||  |||||||    
T  35225008 gattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt 35225085  T

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