View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20502_low_9 (Length: 341)

Name: NF20502_low_9
Description: NF20502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20502_low_9
NF20502_low_9
[»] chr5 (12 HSPs)
chr5 (69-327)||(6055176-6055437)
chr5 (13-113)||(37274761-37274860)
chr5 (20-113)||(11438352-11438446)
chr5 (14-109)||(41064162-41064258)
chr5 (14-57)||(33750988-33751031)
chr5 (13-113)||(21776849-21776951)
chr5 (19-57)||(40434057-40434095)
chr5 (80-125)||(9751687-9751732)
chr5 (13-113)||(8367941-8368041)
chr5 (78-114)||(11465901-11465937)
chr5 (14-109)||(11957592-11957688)
chr5 (14-46)||(33847192-33847224)
[»] chr2 (18 HSPs)
chr2 (14-125)||(38876965-38877077)
chr2 (13-126)||(16670499-16670613)
chr2 (10-107)||(36565255-36565353)
chr2 (14-109)||(38876006-38876103)
chr2 (13-113)||(18249644-18249745)
chr2 (14-108)||(21903942-21904038)
chr2 (20-109)||(23834599-23834688)
chr2 (26-125)||(8237990-8238088)
chr2 (78-125)||(34404599-34404646)
chr2 (20-108)||(11102115-11102204)
chr2 (13-109)||(18250832-18250929)
chr2 (80-113)||(19684216-19684249)
chr2 (19-108)||(22293493-22293582)
chr2 (14-109)||(1902948-1903044)
chr2 (14-107)||(44366887-44366981)
chr2 (80-125)||(15749019-15749064)
chr2 (14-109)||(7577720-7577816)
chr2 (10-46)||(10355260-10355296)
[»] chr3 (27 HSPs)
chr3 (14-109)||(43930744-43930838)
chr3 (25-123)||(3190583-3190680)
chr3 (14-113)||(46610022-46610122)
chr3 (20-126)||(2011910-2012016)
chr3 (14-131)||(10615270-10615388)
chr3 (19-57)||(46596165-46596203)
chr3 (25-125)||(14826030-14826131)
chr3 (14-109)||(18704971-18705067)
chr3 (20-104)||(27318106-27318188)
chr3 (14-109)||(28208089-28208184)
chr3 (25-113)||(51116225-51116313)
chr3 (14-57)||(15093657-15093700)
chr3 (19-125)||(37975970-37976077)
chr3 (25-115)||(3207508-3207597)
chr3 (14-125)||(28206983-28207091)
chr3 (21-109)||(22256220-22256309)
chr3 (30-113)||(31835801-31835885)
chr3 (14-57)||(23545469-23545512)
chr3 (36-125)||(12072832-12072920)
chr3 (80-113)||(37977517-37977550)
chr3 (10-46)||(2011137-2011173)
chr3 (69-113)||(13439642-13439686)
chr3 (69-113)||(17261038-17261082)
chr3 (20-108)||(24842840-24842928)
chr3 (69-113)||(35434072-35434116)
chr3 (69-113)||(46597508-46597552)
chr3 (69-125)||(48044728-48044784)
[»] chr1 (14 HSPs)
chr1 (19-125)||(13917220-13917326)
chr1 (9-109)||(5560891-5560990)
chr1 (19-125)||(13916093-13916199)
chr1 (13-125)||(38741476-38741589)
chr1 (19-113)||(14625383-14625478)
chr1 (17-125)||(4488658-4488767)
chr1 (14-108)||(14626722-14626817)
chr1 (10-57)||(37193548-37193595)
chr1 (13-113)||(2273514-2273614)
chr1 (19-108)||(40372793-40372883)
chr1 (69-131)||(49201385-49201447)
chr1 (14-46)||(8930291-8930323)
chr1 (69-113)||(18458580-18458624)
chr1 (69-113)||(26097027-26097071)
[»] chr7 (10 HSPs)
chr7 (14-125)||(1830813-1830925)
chr7 (13-125)||(1831923-1832035)
chr7 (13-113)||(9553413-9553515)
chr7 (26-109)||(46459001-46459085)
chr7 (14-113)||(17763349-17763450)
chr7 (21-61)||(22718512-22718552)
chr7 (20-113)||(33767339-33767433)
chr7 (14-125)||(35891011-35891120)
chr7 (14-75)||(24436329-24436390)
chr7 (21-57)||(13772591-13772627)
[»] chr6 (13 HSPs)
chr6 (10-113)||(6000610-6000715)
chr6 (13-109)||(12322746-12322842)
chr6 (14-109)||(33485019-33485115)
chr6 (19-109)||(22058227-22058318)
chr6 (13-109)||(24914456-24914553)
chr6 (20-55)||(11424830-11424865)
chr6 (19-109)||(12321580-12321671)
chr6 (14-107)||(22056502-22056596)
chr6 (21-125)||(11425719-11425824)
chr6 (13-113)||(34762195-34762296)
chr6 (79-115)||(7313687-7313723)
chr6 (81-113)||(16129507-16129539)
chr6 (80-124)||(30953822-30953866)
[»] chr8 (9 HSPs)
chr8 (14-113)||(28574554-28574652)
chr8 (14-126)||(27164602-27164715)
chr8 (14-125)||(6105556-6105669)
chr8 (69-115)||(26711359-26711405)
chr8 (14-109)||(39810030-39810126)
chr8 (80-126)||(34901502-34901548)
chr8 (20-109)||(42348979-42349068)
chr8 (69-125)||(25653705-25653761)
chr8 (69-113)||(26537984-26538028)
[»] scaffold0040 (2 HSPs)
scaffold0040 (14-109)||(64521-64616)
scaffold0040 (80-109)||(66054-66083)
[»] chr4 (22 HSPs)
chr4 (14-57)||(2438322-2438365)
chr4 (14-113)||(21994340-21994438)
chr4 (14-113)||(43537781-43537880)
chr4 (14-113)||(29248255-29248355)
chr4 (19-109)||(17695921-17696012)
chr4 (19-113)||(20962207-20962302)
chr4 (10-57)||(43537521-43537568)
chr4 (14-109)||(34741337-34741433)
chr4 (26-105)||(46426122-46426202)
chr4 (14-106)||(50879929-50880021)
chr4 (26-125)||(20986001-20986099)
chr4 (13-109)||(55500347-55500445)
chr4 (69-115)||(27450096-27450142)
chr4 (19-57)||(37421850-37421888)
chr4 (19-57)||(51754147-51754185)
chr4 (69-110)||(32681716-32681757)
chr4 (80-113)||(51752696-51752729)
chr4 (80-113)||(54555362-54555395)
chr4 (73-113)||(12352463-12352503)
chr4 (69-125)||(22272931-22272987)
chr4 (14-109)||(29249653-29249749)
chr4 (69-113)||(34318637-34318680)
[»] scaffold0129 (1 HSPs)
scaffold0129 (13-125)||(37334-37446)
[»] scaffold0250 (1 HSPs)
scaffold0250 (14-109)||(11512-11608)
[»] scaffold0210 (1 HSPs)
scaffold0210 (14-61)||(16685-16732)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-113)||(139143-139234)
[»] scaffold0093 (1 HSPs)
scaffold0093 (19-57)||(8996-9034)
[»] scaffold0227 (1 HSPs)
scaffold0227 (14-55)||(24881-24922)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 69 - 327
Target Start/End: Original strand, 6055176 - 6055437
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacaggggg-taaaaccgtattaacctaaaaatgtaataagtaaatactatgatttgaataaagaaaa 167  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6055176 ttacaggagggaaaaccaaaagtgtcctatattacaggggggtaaaatcctattaacccaaaaatgtaataagtaaatactatgatttgaataaagaaaa 6055275  T
Q  168 acaaaattgatacaaatttaaat-ttttaatgataaagtgattcttgtctnnnnnnngaaataataacaaagggattctaactttttgttatccaatgta 266  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||    
T  6055276 acaaaattgatacaaatttaaatcttttaatgataaagtgattcttgtctaaaaaaataaataataacaaagggattctaactttttgttatgcaatgta 6055375  T
Q  267 gaatttctctatttaacagaagttatatcagtcctcca-aaactaacctattctcgtttttg 327  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6055376 gaatttctctatttaacagaagttatatcagtcctccataaactaacctattctcgtttttg 6055437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 37274860 - 37274761
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    ||||| |||||||||||||||||||||||||||| || ||||||  ||| || || |||||||  | ||||||||||||  | ||||||| |||||||||    
T  37274860 tagggggcaatcctgaagaatctttattttacaaggacggaatc-aaaaaaaaaaattacagggggcaaaaccaaaagtaccctatattatagggggtaa 37274762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 11438446 - 11438352
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||||||||||||||||||||||||  || |||||||  ||| || || |||||||  | ||||||||||||  | ||||||||||||||||||    
T  11438446 caatcctgaagaatctttattttacatggacggaatctaaaaaaaaaaatttacagggagcaaaaccaaaagtaccctatattacagggggtaaa 11438352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 41064258 - 41064162
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaa-gttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || ||  |||||||  | ||||||||||||| | ||||||||||||||    
T  41064258 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgccctatattacaggggg 41064162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 33751031 - 33750988
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||| |||||||||||||||||||||||||||| || |||||||    
T  33751031 agggggcaatcctgaagaatctttattttacaaggacggaatct 33750988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 21776849 - 21776951
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacag-ggggt 110  Q
    ||||| |||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||  | ||||||||||||| | |||||||||| |||||    
T  21776849 tagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaagtgccctatattacagaggggt 21776948  T
Q  111 aaa 113  Q
    |||    
T  21776949 aaa 21776951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 40434095 - 40434057
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||||||||||||||||||||||||||| || |||||||    
T  40434095 gcaatcctgaagaatctttattttacaaggacggaatct 40434057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 9751687 - 9751732
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    ||||||||||||| | ||||||||||||||||||| | ||||||||    
T  9751687 aaaaccaaaagtgacctatattacagggggtaaaagcctattaacc 9751732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 8367941 - 8368041
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    ||||| |||||| ||||||||||| ||||||||| || ||||| | ||| || || ||||| || | |||||||||||||   |||| ||||| ||||||    
T  8367941 tagggggcaatcgtgaagaatcttcattttacaaggacggaatttaaaaaaaaaaattacaagaagcaaaaccaaaagtgctctatactacagagggtaa 8368040  T
Q  113 a 113  Q
    |    
T  8368041 a 8368041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 11465937 - 11465901
Alignment:
Q  78 ggaaaaccaaaagtgtcatatattacagggggtaaaa 114  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  11465937 ggaaaaccaaaagtgacatatattgcagggggtaaaa 11465901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 11957592 - 11957688
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||| | ||||||||| || ||||||| ||| || || || |||||  | ||||||||||||| | ||||||||||||||    
T  11957592 agggggcaatcttgaagaatcgtcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgccctatattacaggggg 11957688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 33847224 - 33847192
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaa 46  Q
    |||| ||||||||||||||||||||||||||||    
T  33847224 agggggcaatcctgaagaatctttattttacaa 33847192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 38876965 - 38877077
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    |||| |||||| ||||||||||||||||||||| || ||||||| ||| || || || |||||| ||||||||||||||| | |||||||||||||||||    
T  38876965 agggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaatttacaggaaggaaaaccaaaagtgccttatattacagggggtaa 38877064  T
Q  113 aaccgtattaacc 125  Q
    | || ||||||||    
T  38877065 agccctattaacc 38877077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 16670613 - 16670499
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggta 111  Q
    ||||| |||||| ||||||||||| |||||||||||| |||||||  ||| || || |||||||  | ||||||||||||| | ||||||||||||||||    
T  16670613 tagggggcaatcgtgaagaatcttcattttacaatgacggaatctaaaaaaaaaaaattacagggggcaaaaccaaaagtgccctatattacagggggta 16670514  T
Q  112 aaaccgtattaacct 126  Q
    ||  | |||||||||    
T  16670513 aagacctattaacct 16670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 36565353 - 36565255
Alignment:
Q  10 gcatagggagcaatcctgaagaatctttattttacaatgatggaatcttaaa-caagaagttacaggacggaaaaccaaaagtgtcatatattacaggg 107  Q
    ||||| || |||||||||||||||||||||||||||| || ||||||| |||  || || |||||||  ||||||||||||||||  ||||||||||||    
T  36565353 gcatatggggcaatcctgaagaatctttattttacaaggacggaatctaaaataaaaaatttacagggaggaaaaccaaaagtgttttatattacaggg 36565255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 38876103 - 38876006
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct--taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||||||||||||| || |||||||   ||| || || |||||||  | ||||||||||||||| ||||||||||||||    
T  38876103 agggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaaatttacagggggaaaaaccaaaagtgtcctatattacaggggg 38876006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 18249745 - 18249644
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattac-agggggta 111  Q
    ||||| |||||| ||||||||||| ||||||||| ||  |||||| ||| || || ||||||||   ||||||||||||| |||||||||| ||||||||    
T  18249745 tagggggcaatcgtgaagaatcttcattttacaaggacagaatctaaaaaaaaaatttacaggagacaaaaccaaaagtgccatatattacaagggggta 18249646  T
Q  112 aa 113  Q
    ||    
T  18249645 aa 18249644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 21904038 - 21903942
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct--taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg 108  Q
    |||| |||||| ||||||||||||||||||||| || |||||||   ||| || || |||||||  ||||||||||||||| | |||||||||||||    
T  21904038 agggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaaatttacaggggggaaaaccaaaagtgccctatattacagggg 21903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 23834688 - 23834599
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||| ||||||||||| ||||||||| || ||||||| ||| || || |||||||  | ||||||||||||| | ||||||||||||||    
T  23834688 caatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaaattacagggggcaaaaccaaaagtgccctatattacaggggg 23834599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 8238088 - 8237990
Alignment:
Q  26 tgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    ||||||||||||||||||||| ||  |||||| ||| || || |||||||  | ||||||||||||||  ||||||||| ||||||||||  ||||||||    
T  8238088 tgaagaatctttattttacaaggaccgaatctaaaaaaaaaa-ttacagggggcaaaaccaaaagtgttctatattacatggggtaaaacactattaacc 8237990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 34404599 - 34404646
Alignment:
Q  78 ggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  34404599 ggaaaaccaaaagtgacatatattacagggggtaaaagcctattaacc 34404646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 11102115 - 11102204
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacagga-cggaaaaccaaaagtgtcatatattacagggg 108  Q
    ||||| |||||||||||||||||| || || ||||||| ||| || || ||||||||  ||||||||||||||  | |||||||||||||    
T  11102115 caatcttgaagaatctttattttaaaaggacggaatctaaaaaaaaaaattacaggaggggaaaaccaaaagtaccctatattacagggg 11102204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 18250832 - 18250929
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||||| ||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||| | |||||||||| || | ||||||||||||||    
T  18250832 tagggaacaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacaggaggcaaaaccaaaaatgccctatattacaggggg 18250929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 19684249 - 19684216
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||||||||||||||||||||||||||||||||    
T  19684249 aaaaccaaaagtgtcatatattacagggggtaaa 19684216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 22293493 - 22293582
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg 108  Q
    ||||| |||||||||||||||||||||| ||  |||||| ||| || || |||||||  | ||||| ||||||| | |||||||||||||    
T  22293493 gcaatactgaagaatctttattttacaaggaccgaatctaaaaaaaaaatttacagggggaaaaacaaaaagtgccttatattacagggg 22293582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 1903044 - 1902948
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaa-gttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || ||  |||||||  | ||||||||||||| | ||||||||||||||    
T  1903044 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgccctatattacaggggg 1902948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 44366981 - 44366887
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggg 107  Q
    |||| |||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||  | ||||||||||||| | ||||||||||||    
T  44366981 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaagtgccctatattacaggg 44366887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 15749019 - 15749064
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    ||||||||||||| ||||||||||||||| ||||| | ||||||||    
T  15749019 aaaaccaaaagtgacatatattacaggggataaaagcctattaacc 15749064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 7577720 - 7577816
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||| ||||||| ||||||||| || ||||||| ||| || || || |||||  | ||||||||||||| | ||||||||||||||    
T  7577720 agggggcaatcttgatgaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggtaaaaccaaaagtgccctatattacaggggg 7577816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 10355260 - 10355296
Alignment:
Q  10 gcatagggagcaatcctgaagaatctttattttacaa 46  Q
    ||||||||  |||||||||||||||||||||||||||    
T  10355260 gcataggggacaatcctgaagaatctttattttacaa 10355296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 43930744 - 43930838
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||||||||||||| |||||||||| ||| || || |||||||  ||| ||||||||||||||||||||||| ||||    
T  43930744 agggggcaatcttgaagaatctttattttacaaggatggaatctaaaaaaaaaaattacagg-gggagaaccaaaagtgtcatatattacaagggg 43930838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 3190583 - 3190680
Alignment:
Q  25 ctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaa 123  Q
    |||||||||||||||||||||| |  ||||||| ||| || || ||||||| |  ||||||||||||| | |||||||||||||||||||| |||||||    
T  3190583 ctgaagaatctttattttacaagggcggaatctaaaaaaaaaaattacaggtcc-aaaaccaaaagtggcctatattacagggggtaaaacagtattaa 3190680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 46610122 - 46610022
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    ||||||||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||  | ||||||||||||| | |||||||||||||||||    
T  46610122 agggagcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacagggggcaaaaccaaaagtgccctatattacagggggtaa 46610023  T
Q  113 a 113  Q
    |    
T  46610022 a 46610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 2011910 - 2012016
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgt 118  Q
    ||||||||||||||||||||||||||| ||| ||||||  ||| || || |||||||  |||||||||||| || ||||||||| ||||| ||||||  |    
T  2011910 caatcctgaagaatctttattttacaaggatagaatctaaaaaaaaaaaattacagg-gggaaaaccaaaaatgccatatattataggggataaaactct 2012008  T
Q  119 attaacct 126  Q
    ||||||||    
T  2012009 attaacct 2012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 10615388 - 10615270
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || || || |||||  | ||||||||||||| | |||||||||||||||||    
T  10615388 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaagtgccctatattacagggggtaa 10615289  T
Q  113 aaccgtattaacctaaaaa 131  Q
    |  | |||||||| |||||    
T  10615288 agacctattaaccaaaaaa 10615270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 46596203 - 46596165
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46596203 gcaatcctgaagaatctttattttacaatgatggaatct 46596165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 14826030 - 14826131
Alignment:
Q  25 ctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaa 123  Q
    |||||||||||||||||||||| || ||||||| ||| ||  | || |||||  | ||||||||||||| || |||||||||||||||||||  ||||||    
T  14826030 ctgaagaatctttattttacaaggacggaatctaaaaaaaatattttacagggggcaaaaccaaaagtgacaaatattacagggggtaaaacactattaa 14826129  T
Q  124 cc 125  Q
    ||    
T  14826130 cc 14826131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 18705067 - 18704971
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| ||||||||||||||||||||||| |||| || |||||||  ||| || || |||||||  ||||||||||||||| | |||||||| |||||    
T  18705067 agggggcaatcctgaagaatctttatttgacaaggaaggaatctaaaaaaaaaaatttacaggggggaaaaccaaaagtgccctatattactggggg 18704971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 27318188 - 27318106
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattaca 104  Q
    ||||||||||||||||||||||||||| ||  |||||||| | || || |||||||  ||||||||||||||||| |||||||||    
T  27318188 caatcctgaagaatctttattttacaaagacagaatcttaca-aaaaaattacagg-gggaaaaccaaaagtgtcttatattaca 27318106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 28208089 - 28208184
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||||||||||||| || |||||||  ||| || || |||||||  ||||||||||||||| | ||||||||||||||    
T  28208089 agggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaaattacagg-gggaaaaccaaaagtgccctatattacaggggg 28208184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 51116313 - 51116225
Alignment:
Q  25 ctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||||||||||||||||| ||  |||||| ||| ||  | |||||||| | ||||| |||| || ||||||||||||||||||||    
T  51116313 ctgaagaatctttattttacaaggactgaatctaaaaaaaatatttacaggaggcaaaactaaaattgccatatattacagggggtaaa 51116225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 15093657 - 15093700
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  15093657 agggggcaatcctgaagaatctttattttacaaggatggaatct 15093700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 37976077 - 37975970
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacag-ggggtaaaaccg 117  Q
    ||||||||| |||||||||||||||||| || ||||||| ||| || || ||| |||  | ||||||||||||  | |||||||||| ||||||||||      
T  37976077 gcaatcctggagaatctttattttacaaggacggaatctaaaaaaaaaatttatagggggcaaaaccaaaagtaccctatattacaggggggtaaaactc 37975978  T
Q  118 tattaacc 125  Q
    ||||||||    
T  37975977 tattaacc 37975970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 3207508 - 3207597
Alignment:
Q  25 ctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaac 115  Q
    |||||||||||||||||||||| |   |||||| ||| || || ||||||| |  ||||||||||||| | ||||||||||||||||||||    
T  3207508 ctgaagaatctttattttacaagggcagaatctaaaaaaaaaatttacagggcc-aaaaccaaaagtggcctatattacagggggtaaaac 3207597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 28207091 - 28206983
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagg-gggtaa 112  Q
    |||| |||||| ||||||||||||||||||||| |   |||||| ||| || || |||||||  ||||||||||||||| | ||||||||||| ||||||    
T  28207091 agggggcaatcttgaagaatctttattttacaacg---gaatctaaaaaaa-aatttacaggggggaaaaccaaaagtgccctatattacaggagggtaa 28206996  T
Q  113 aaccgtattaacc 125  Q
    | || ||||||||    
T  28206995 agccctattaacc 28206983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 22256309 - 22256220
Alignment:
Q  21 aatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| ||||||||||| ||||||||| || ||||||| ||| || |  || |||||  | ||||||||||||||||||||||||||||||    
T  22256309 aatcgtgaagaatcttcattttacaaggacggaatctaaaaaaatagttttacagggggcaaaaccaaaagtgtcatatattacaggggg 22256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 31835801 - 31835885
Alignment:
Q  30 gaatctttattttacaatgatggaatcttaaacaag-aagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||||||||||||||| || | ||||| ||| ||  || |||||||  | |||| |||||||||||||||||||||||||||||    
T  31835801 gaatctttattttacaacgacgaaatctaaaaaaaataaattacagggggcaaaatcaaaagtgtcatatattacagggggtaaa 31835885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 23545469 - 23545512
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||| |||||||||||||||||| ||||||| ||||||||||||    
T  23545469 agggggcaatcctgaagaatcttcattttacgatgatggaatct 23545512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 12072832 - 12072920
Alignment:
Q  36 ttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    |||||||||||||| ||||||| ||| || || ||||||   | ||||||||||||| | |||||||| |||||||||||  ||||||||    
T  12072832 ttattttacaatgacggaatctaaaagaa-aatttacagcgggcaaaaccaaaagtgacctatattacggggggtaaaacattattaacc 12072920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 37977517 - 37977550
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||||||||||||| ||||||||||||||||||    
T  37977517 aaaaccaaaagtgtcctatattacagggggtaaa 37977550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 2011173 - 2011137
Alignment:
Q  10 gcatagggagcaatcctgaagaatctttattttacaa 46  Q
    |||||| | ||||||||||||||||||||||||||||    
T  2011173 gcatagagggcaatcctgaagaatctttattttacaa 2011137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 13439686 - 13439642
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||||||||||||||| ||| || | ||||||||||||||||||    
T  13439686 ttacaggacggaaaaccgaaaatgacctatattacagggggtaaa 13439642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 17261082 - 17261038
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| |||||||||||| || | ||||||||||||||||||    
T  17261082 ttacaggagggaaaaccaaaaatgacctatattacagggggtaaa 17261038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 24842928 - 24842840
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg 108  Q
    ||||||||||||||||| ||||| ||| | |||||||| ||| || || |||||||    |||||||||||||   |||||||||||||    
T  24842928 caatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaattacaggggctaaaaccaaaagtgcactatattacagggg 24842840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 35434072 - 35434116
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| |||||||||||| || | ||||||||||||||||||    
T  35434072 ttacaggagggaaaaccaaaaatgacctatattacagggggtaaa 35434116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 46597508 - 46597552
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| | ||||||||||||| | ||||||||||||||||||    
T  46597508 ttacaggaggcaaaaccaaaagtgccctatattacagggggtaaa 46597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 48044728 - 48044784
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    |||||||| |||||||||||| || | |||||| |||||||||||| | ||||||||    
T  48044728 ttacaggagggaaaaccaaaaatgacttatattgcagggggtaaaagcctattaacc 48044784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 13917220 - 13917326
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgt 118  Q
    |||||| ||||||||||||||||||||| || ||||||| |||  | || |||||||   |||||||||||||||| ||||||||||||| ||||||  |    
T  13917220 gcaatcttgaagaatctttattttacaaggacggaatctaaaaataaaaattacaggggagaaaaccaaaagtgtcctatattacaggggataaaactct 13917319  T
Q  119 attaacc 125  Q
    |||||||    
T  13917320 attaacc 13917326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 5560990 - 5560891
Alignment:
Q  9 agcatagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg 108  Q
    ||||||||| |||||| ||||||||||||||||||||| || ||||||| ||| || || |||||||  |||||||||||||||   |||||||||||||    
T  5560990 agcatagggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaacaaattacagg-gggaaaaccaaaagtgctctatattacagggg 5560892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 13916199 - 13916093
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattac-agggggtaaaaccg 117  Q
    |||||| ||||||||||||||||||||| || ||||||| ||| || || ||||||    ||||||||||||||||||||||||| |||||||||| ||     
T  13916199 gcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaa-ttacagaggagaaaaccaaaagtgtcatatattacaagggggtaaagccc 13916101  T
Q  118 tattaacc 125  Q
    ||||||||    
T  13916100 tattaacc 13916093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 38741589 - 38741476
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggta 111  Q
    ||||| ||||| |||||||||||||||||||||| |||| ||||| ||| ||  | || |||||  | ||||||||||||||| ||||||||||||| ||    
T  38741589 tagggggcaattctgaagaatctttattttacaaggatgaaatctaaaaaaaatattttacagggggcaaaaccaaaagtgtcttatattacaggggtta 38741490  T
Q  112 aaaccgtattaacc 125  Q
    ||||  ||||||||    
T  38741489 aaacattattaacc 38741476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 14625478 - 14625383
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||| ||||||||||| ||||||||| || ||||||| ||| || || || |||||  | ||||||||||||||| ||||||||||||||||||    
T  14625478 gcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgtcctatattacagggggtaaa 14625383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 4488658 - 4488767
Alignment:
Q  17 gagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacgg-aaaaccaaaagtgtcatatattacagggggtaaaac 115  Q
    |||||||||||||||||||||||||||  | |||||||||||||| ||  | ||  | || || ||||||||||||||  ||||||| ||||||||||||    
T  4488658 gagcaatcctgaagaatctttattttatgaggatggaatcttaaaaaaatattttaaagagggcaaaaccaaaagtgttctatattatagggggtaaaac 4488757  T
Q  116 cgtattaacc 125  Q
      ||||||||    
T  4488758 aatattaacc 4488767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 14626722 - 14626817
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg 108  Q
    |||| |||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||| | ||||||||||||| | |||||||||||||    
T  14626722 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacaggaggcaaaaccaaaagtgccctatattacagggg 14626817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 37193595 - 37193548
Alignment:
Q  10 gcatagggagcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  37193595 gcatagggggcaatcttgaagaatctttattttacaaggatggaatct 37193548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 2273614 - 2273514
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggta 111  Q
    |||||||||||| ||||||||||| ||||||||| || |||||||  ||| || || ||||| || || |||| ||||||| | ||||||||||||||||    
T  2273614 tagggagcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttaca-gagggcaaacaaaaagtgccctatattacagggggta 2273516  T
Q  112 aa 113  Q
    ||    
T  2273515 aa 2273514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 40372883 - 40372793
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg 108  Q
    ||||||||||| ||||||||||||| |  ||||||||||  ||| || || |||||||| |||||| ||||||||   |||||||||||||    
T  40372883 gcaatcctgaaaaatctttattttaaagggatggaatctaaaaaaaaaaaattacaggagggaaaatcaaaagtgctctatattacagggg 40372793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 49201385 - 49201447
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacctaaaaa 131  Q
    |||||||  ||||||||||||||| | |||||| |||||||||||| | |||||||| |||||    
T  49201385 ttacaggggggaaaaccaaaagtgacctatattgcagggggtaaaagcctattaacccaaaaa 49201447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 8930291 - 8930323
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaa 46  Q
    |||| ||||||||||||||||||||||||||||    
T  8930291 agggggcaatcctgaagaatctttattttacaa 8930323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 18458624 - 18458580
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| |||||| ||||| || ||||||||||||||||||||    
T  18458624 ttacaggagggaaaatcaaaaatgacatatattacagggggtaaa 18458580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 26097027 - 26097071
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| | ||||||||||||| | ||||||||||||||||||    
T  26097027 ttacaggaggcaaaaccaaaagtgacctatattacagggggtaaa 26097071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 1830925 - 1830813
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    ||||||||||| ||||||||||||||||||||| || |||||||  ||| || || ||||| |  |||||| ||||||| || |||||||||||||||||    
T  1830925 agggagcaatcttgaagaatctttattttacaaagacggaatctaaaaaaaaaaatttacaagggggaaaatcaaaagtatcctatattacagggggtaa 1830826  T
Q  113 aaccgtattaacc 125  Q
    | || ||||||||    
T  1830825 agccctattaacc 1830813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 1831923 - 1832035
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggta 111  Q
    ||||| |||||| ||||||||||||||||||||| ||| ||||||  ||| || || |||||||  |||||| |||||||| | ||||||||||||||||    
T  1831923 tagggggcaatcttgaagaatctttattttacaaggatagaatctaaaaaaaaaaatttacagg-gggaaaatcaaaagtgccctatattacagggggta 1832021  T
Q  112 aaaccgtattaacc 125  Q
    || || ||||||||    
T  1832022 aagccctattaacc 1832035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 9553515 - 9553413
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaaga--agttacaggacggaaaaccaaaagtgtcatatattacagggggt 110  Q
    ||||| |||||| ||||||||||| ||||||||| || ||||||| ||| || |  | |||||||| | ||||||||||||| | |||||||||||||||    
T  9553515 tagggggcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaataatttacaggaggcaaaaccaaaagtgccctatattacagggggt 9553416  T
Q  111 aaa 113  Q
    |||    
T  9553415 aaa 9553413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 46459085 - 46459001
Alignment:
Q  26 tgaagaatctttattttacaatgatggaatcttaaacaagaagtt--acaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||||||||||||||||||| ||| |||||| ||| || |  ||  |||||| | ||||||||||||||||||||||||||||||    
T  46459085 tgaagaatctttattttacaa-gatcgaatctaaaaaaaaatattttacaggaggcaaaaccaaaagtgtcatatattacaggggg 46459001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 17763450 - 17763349
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaa-gttacaggacggaaaaccaaaagtgtcatatattacag-ggggta 111  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || ||  |||||||  | ||||||||||||||| |||||||||| ||||||    
T  17763450 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgtcctatattacagaggggta 17763351  T
Q  112 aa 113  Q
    ||    
T  17763350 aa 17763349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 22718512 - 22718552
Alignment:
Q  21 aatcctgaagaatctttattttacaatgatggaatcttaaa 61  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  22718512 aatcctgaagaatctttattttacaaggatgaaatcttaaa 22718552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 33767339 - 33767433
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatcttaaacaagaagt--tacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||| ||||||||||| ||||||||| || ||||||| ||| || || |  ||||||  | ||||||||||||||||||||||||||||| ||||    
T  33767339 caatcgtgaagaatcttaattttacaaagacggaatctaaaaaaaaaaatattacaggg-gcaaaaccaaaagtgtcatatattacaggggataaa 33767433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 35891120 - 35891011
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||| |||||||||||||||||||||||||||| || | |||||  || || || ||||||   | ||| ||||||||  | ||||||||||||||||||    
T  35891120 agggggcaatcctgaagaatctttattttacaaagacgaaatct--aaaaaaaaattacagagggcaaatccaaaagtaccttatattacagggggtaaa 35891023  T
Q  114 accgtattaacc 125  Q
    ||  ||||||||    
T  35891022 actctattaacc 35891011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 24436329 - 24436390
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacagg 75  Q
    |||| |||||||||| ||||||||||||||||| || ||||||| ||| || || |||||||    
T  24436329 agggggcaatcctgaggaatctttattttacaaggacggaatctaaaaaaaaaaattacagg 24436390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13772591 - 13772627
Alignment:
Q  21 aatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  13772591 aatcttgaagaatctttattttacaaggatggaatct 13772627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 6000610 - 6000715
Alignment:
Q  10 gcatagggagcaatcctgaagaatctttattttacaatgatggaatct---taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagg 106  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||    ||| || || |||||||  |||||||||||||||   |||||||||||    
T  6000610 gcatagggggcaatcctgaagaatctttattttacaaggatggaatctgaagaaaaaaaaaattacagg-gggaaaaccaaaagtgctctatattacagg 6000708  T
Q  107 gggtaaa 113  Q
    |||||||    
T  6000709 gggtaaa 6000715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 12322746 - 12322842
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||| |||||| ||||||||||| ||||||||| || ||||||| ||| || || |||||||  | |||| |||||||| | ||||||||||||||    
T  12322746 tagggggcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaaattacagggggcaaaatcaaaagtgccctatattacaggggg 12322842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 33485019 - 33485115
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatctt-aaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||||||||||||||||||||||||| || ||||| || ||| || || |||||||  | ||||||||||||  | ||||||||||||||    
T  33485019 agggggcaatcctgaagaatctttattttacaaggacggaattttaaaaaaaaaatttacagggggcaaaaccaaaagtaccctatattacaggggg 33485115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 22058227 - 22058318
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||||| ||||||||||| ||||||||| || |||||||  ||| ||||| |||||||  | ||||||||||||| | ||||||||||||||    
T  22058227 gcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaagaatttacagggggcaaaaccaaaagtgccctatattacaggggg 22058318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 24914553 - 24914456
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||| |||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||  | |||| |||||||||| ||||||||||||||    
T  24914553 tagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacagggggcaaaatcaaaagtgtcctatattacaggggg 24914456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 11424865 - 11424830
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaat 55  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11424865 caatcctgaagaatctttattttacaaggatggaat 11424830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 12321671 - 12321580
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||||| ||||||||||| ||||||||| || | ||||| |||| || || |||||||| | ||||||||||||  | ||||||||||||||    
T  12321671 gcaatcgtgaagaatcttcattttacaaggacgaaatctataaaaaaaaaattacaggaggcaaaaccaaaagtaccctatattacaggggg 12321580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 22056596 - 22056502
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggg 107  Q
    |||| |||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||  | ||||||||||||| | ||||||||||||    
T  22056596 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaagtgccctatattacaggg 22056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 11425719 - 11425824
Alignment:
Q  21 aatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgta 119  Q
    |||| ||| ||||||||||||||||| || ||||| | ||| ||  | || |||||| ||||||| ||||||| | ||||||||||||| ||||||  ||    
T  11425719 aatcttgatgaatctttattttacaaagacggaatttaaaaaaaatattttacaggagggaaaactaaaagtgccctatattacaggggataaaacacta 11425818  T
Q  120 ttaacc 125  Q
    ||||||    
T  11425819 ttaacc 11425824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 34762296 - 34762195
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggta 111  Q
    ||||| |||||  ||||||||||| ||||||||| || | ||||| |||| || || |||||||  | ||||||||||||| | ||||||||||| ||||    
T  34762296 tagggggcaattgtgaagaatcttcattttacaaggacgaaatctataaaaaaaaatttacagggagcaaaaccaaaagtgccctatattacaggaggta 34762197  T
Q  112 aa 113  Q
    ||    
T  34762196 aa 34762195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 7313687 - 7313723
Alignment:
Q  79 gaaaaccaaaagtgtcatatattacagggggtaaaac 115  Q
    ||||||||||| || ||||||||||||||||||||||    
T  7313687 gaaaaccaaaaatgacatatattacagggggtaaaac 7313723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 16129539 - 16129507
Alignment:
Q  81 aaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||||||| ||||||||||||||||||||    
T  16129539 aaaccaaaagtgacatatattacagggggtaaa 16129507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 30953822 - 30953866
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaaaccgtattaac 124  Q
    |||||||||||| |||||||||||| ||| ||||||| |||||||    
T  30953822 aaaaccaaaagtttcatatattacatgggataaaaccctattaac 30953866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 28574652 - 28574554
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattac-agggggtaa 112  Q
    |||| |||||| |||||||||||||||||| || || ||||||| ||| || || |||||||  |||||||||||||||||||||||||| |||||||||    
T  28574652 agggggcaatcttgaagaatctttattttaaaaggacggaatctaaaaaaaaaa-ttacaggg-ggaaaaccaaaagtgtcatatattacaagggggtaa 28574555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 27164602 - 27164715
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || || || |||||  | ||||||||||||| | |||||||||||||||||    
T  27164602 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgccctatattacagggggtaa 27164701  T
Q  113 aaccgtattaacct 126  Q
    |  | |||||||||    
T  27164702 agacctattaacct 27164715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 6105669 - 6105556
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaaca--agaagttacaggacggaaaaccaaaagtgtcatatattacagggggta 111  Q
    |||| ||||||||||||||||||||||||||||  | ||||||| ||| |  | |  |||||||  | ||||||||||||||| |||||| || ||||||    
T  6105669 agggggcaatcctgaagaatctttattttacaagtacggaatctaaaaaaatatattttacagggagcaaaaccaaaagtgtcctatattgcacggggta 6105570  T
Q  112 aaaccgtattaacc 125  Q
    ||||  ||||||||    
T  6105569 aaacactattaacc 6105556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 26711405 - 26711359
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaac 115  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||    
T  26711405 ttacaggagggaaaaccaaaaatgacatatattacagggggtaaaac 26711359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 39810030 - 39810126
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||| ||||||||| || |||||||  ||| || || |||||||  | ||||||||||||| | ||||||||||||||    
T  39810030 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaataatttacagggggcaaaaccaaaagtgccctatattacaggggg 39810126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 34901548 - 34901502
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacct 126  Q
    ||||||||||||| | ||||||||||||||||||| | |||||||||    
T  34901548 aaaaccaaaagtgacctatattacagggggtaaaagcctattaacct 34901502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 42349068 - 42348979
Alignment:
Q  20 caatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||| ||||||||||| ||||||||| || ||||| | |||  | || |||||||  | ||||||||||||| | ||||||||||||||    
T  42349068 caatcttgaagaatcttcattttacaaggacggaatttaaaaagaaaaattacagggggcaaaaccaaaagtgccctatattacaggggg 42348979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 25653761 - 25653705
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    |||||||  |||||||||||| || | ||||||||||||||||||||  ||||||||    
T  25653761 ttacaggggggaaaaccaaaaatgacctatattacagggggtaaaacactattaacc 25653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 26538028 - 26537984
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| |||||||||||| || ||||||||||| ||||||||    
T  26538028 ttacaggagggaaaaccaaaaatgacatatattacaaggggtaaa 26537984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 64616 - 64521
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||||||||||||||||||||||||| || | ||||| ||| || || |||||||  | ||||||||||||  | ||||||||||||||    
T  64616 agggggcaatcctgaagaatctttattttacaaggacgaaatctaaaaaaaaaaattacagggggcaaaaccaaaagtaccctatattacaggggg 64521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 66054 - 66083
Alignment:
Q  80 aaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||||||||||||||||||||||||||||    
T  66054 aaaaccaaaagtgtcatatattacaggggg 66083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 2438365 - 2438322
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  2438365 agggagcaatcctgaagaatctttattttacaaggatggaatct 2438322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 21994438 - 21994340
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||| |||||||| ||||||||||||||||||| || |||||| |||| || || |||||||    |||| |||||||||| ||||||||||||||||||    
T  21994438 agggggcaatcctaaagaatctttattttacaaggacggaatc-taaaaaaaaaattacaggggacaaaatcaaaagtgtcctatattacagggggtaaa 21994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 43537781 - 43537880
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||| ||||||||||||||| ||||||||| || || ||||||| ||| || || |||||||  |||||||||||||| || ||||||| ||| ||||||    
T  43537781 agggggcaatcctgaagaatttttattttagaaggacggaatctaaaaaaaaaaattacaggggggaaaaccaaaagtatcctatattagaggaggtaaa 43537880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 29248355 - 29248255
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaa 112  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || || || ||||   | ||||||||||||||| |||||||||||||||||    
T  29248355 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaataaatttacagcgggtaaaaccaaaagtgtcctatattacagggggtaa 29248256  T
Q  113 a 113  Q
    |    
T  29248255 a 29248255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 17695921 - 17696012
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaag-ttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||||| ||||||||||| |||||||||||| | ||||| ||| || ||  |||||||  | ||||||||||||||| ||||||||||||||    
T  17695921 gcaatcgtgaagaatcttcattttacaatgacgaaatctaaaataaaaaaattacagggggcaaaaccaaaagtgtcttatattacaggggg 17696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 20962302 - 20962207
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||| ||||||||||| ||||||||| || ||||||| ||| || |  || |||||  | ||||||||||||| ||||||||||||||||||||    
T  20962302 gcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaatttttacagggggcaaaaccaaaagtgccatatattacagggggtaaa 20962207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 43537568 - 43537521
Alignment:
Q  10 gcatagggagcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||    
T  43537568 gcatagggggcaatcctgaagaatctttattttacaaggacggaatct 43537521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 34741337 - 34741433
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaa-gttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||| ||||||||| || ||||||| ||| || ||  |||||||  | ||||||||||||| | ||||||||||||||    
T  34741337 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgccctatattacaggggg 34741433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 46426202 - 46426122
Alignment:
Q  26 tgaagaatctttattttacaatgatggaatcttaaacaagaagtt-acaggacggaaaaccaaaagtgtcatatattacag 105  Q
    ||||||||||||||||||||| || ||||||| ||| || || || ||||   ||||||||||||||||| ||||||||||    
T  46426202 tgaagaatctttattttacaaggacggaatctaaaaaaaaaaatttacagaggggaaaaccaaaagtgtcctatattacag 46426122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 50880021 - 50879929
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagg 106  Q
    |||| ||||||||||| |||||||||||||| | || ||||||| ||| || || ||| |||  | ||||||||||||| | |||||||||||    
T  50880021 agggggcaatcctgaaaaatctttattttaccaggacggaatctaaaaaaaaaaattagagggagcaaaaccaaaagtggcctatattacagg 50879929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 20986001 - 20986099
Alignment:
Q  26 tgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    |||| ||||||||||||| || ||  |||||| ||| || ||||||||||  | ||||| ||| ||||||||||||| ||||||||||||  ||||||||    
T  20986001 tgaaaaatctttattttataaggaccgaatctaaaaaaa-aagttacagggggcaaaacaaaaggtgtcatatattatagggggtaaaacactattaacc 20986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 55500347 - 55500445
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaa--gaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    ||||| |||||| ||||||||||| ||||||||  |||||||||| ||| ||   || |||||||  | |||||||||| |||| ||||||||||||||    
T  55500347 tagggggcaatcgtgaagaatcttcattttacagggatggaatctaaaaaaaataaaattacagggggcaaaaccaaaaatgtcctatattacaggggg 55500445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 27450096 - 27450142
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaac 115  Q
    |||||||  |||||||||||| || ||||||||||||||||||||||    
T  27450096 ttacaggggggaaaaccaaaaatgacatatattacagggggtaaaac 27450142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 37421850 - 37421888
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  37421850 gcaatcctgaataatctttattttacaaggatggaatct 37421888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 51754147 - 51754185
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||||||||||||||||||||||||||| || |||||||    
T  51754147 gcaatcctgaagaatctttattttacaaggacggaatct 51754185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 32681757 - 32681716
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggt 110  Q
    |||||||| |||||||||||| |||| |||||||||||||||    
T  32681757 ttacaggagggaaaaccaaaaatgtcctatattacagggggt 32681716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 51752729 - 51752696
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||| |||||||||||||||||||||||||||||    
T  51752729 aaaatcaaaagtgtcatatattacagggggtaaa 51752696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 54555362 - 54555395
Alignment:
Q  80 aaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    ||||||||||||| ||||||||||||||||||||    
T  54555362 aaaaccaaaagtgccatatattacagggggtaaa 54555395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 12352463 - 12352503
Alignment:
Q  73 aggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||| ||||||||||||||| | ||||||||||||||||||    
T  12352463 aggagggaaaaccaaaagtgacctatattacagggggtaaa 12352503  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 22272987 - 22272931
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaaaccgtattaacc 125  Q
    |||||||| |||||||| ||| || | ||||||||||||||||||| | ||||||||    
T  22272987 ttacaggagggaaaaccgaaaatgacctatattacagggggtaaaaacctattaacc 22272931  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 29249653 - 29249749
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||| ||||||||||||||||||||| || | |||||  ||| || || |||||||  | ||||||||||||  | ||||||||||||||    
T  29249653 agggggcaatcttgaagaatctttattttacaaggacgaaatctaaaaaaaaaaatttacagggggcaaaaccaaaagttccctatattacaggggg 29249749  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 34318637 - 34318680
Alignment:
Q  69 ttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  34318637 ttacagga-ggaaaaccaaaaatgacatatattacagggggtaaa 34318680  T

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Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 37334 - 37446
Alignment:
Q  13 tagggagcaatcctgaagaatctttattttacaatgatggaatcttaaacaagaagttacaggacggaaaaccaaaagtgtcatatattacagggg-gta 111  Q
    ||||| |||||||||||||||||||||||||||| || |||||| |||  || || |||||||  | |||||||||||| || ||||| ||||||| |||    
T  37334 tagggggcaatcctgaagaatctttattttacaaggacggaatc-taataaaaaaattacagggggcaaaaccaaaagtatcctatatgacaggggtgta 37432  T
Q  112 aaaccgtattaacc 125  Q
    ||||  ||||||||    
T  37433 aaactctattaacc 37446  T

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Target: scaffold0250 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 11512 - 11608
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatct-taaacaagaagttacaggacggaaaaccaaaagtgtcatatattacaggggg 109  Q
    |||| |||||||||||||||||||||||||||| || |||||||  ||| || || |||||||  | ||||||||||||   |||||||||||||||    
T  11512 agggggcaatcctgaagaatctttattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaagtactatatattacaggggg 11608  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 16732 - 16685
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaatcttaaa 61  Q
    |||| ||||||||||| |||||||||||||||| ||| ||||||||||    
T  16732 agggggcaatcctgaataatctttattttacaaggattgaatcttaaa 16685  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 139143 - 139234
Alignment:
Q  25 ctgaagaatctttattttacaatgatggaatcttaaacaag----aagttacaggacggaaaaccaaaagtgtcatatattacagggggtaaa 113  Q
    |||||||||||||||||||||||||  |||||| ||| ||     || |||||||| | | || |||||||||||||||||||||||||||||    
T  139143 ctgaagaatctttattttacaatgacagaatctaaaaaaaataaaaatttacagga-gcagaatcaaaagtgtcatatattacagggggtaaa 139234  T

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Target: scaffold0093 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 8996 - 9034
Alignment:
Q  19 gcaatcctgaagaatctttattttacaatgatggaatct 57  Q
    |||||||||||||||||||||||||||| || |||||||    
T  8996 gcaatcctgaagaatctttattttacaaggacggaatct 9034  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 24881 - 24922
Alignment:
Q  14 agggagcaatcctgaagaatctttattttacaatgatggaat 55  Q
    |||| |||||||||||||||||||||||||||| || |||||    
T  24881 agggggcaatcctgaagaatctttattttacaaggacggaat 24922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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