View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20503_high_1 (Length: 435)
Name: NF20503_high_1
Description: NF20503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20503_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 197 - 420
Target Start/End: Original strand, 32727919 - 32728146
Alignment:
| Q |
197 |
ccagaagatacagtaattata----tatttccctttctcttaaactacaaaaacacattgggactcagaatgtgctttaataatcatgttccaaagcttt |
292 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32727919 |
ccagaagatacagtaattatatatatatttccctttctcttaaactacaaaaacacattgggactcagaatgtgctttaataatcgtgttccaaagcttt |
32728018 |
T |
|
| Q |
293 |
ccataaatggatgatctgtgacactgctggaagataagccagtgttttcgtttgtcatttagctttctttgttcttggtgattcaggaagaagaggtgta |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32728019 |
ccataaatggatgatctgtgacactgctggaagataagccagtgttttcgtttgtcatttagctttctttgttcttggtgattcaggaagaagaggtgta |
32728118 |
T |
|
| Q |
393 |
tatatctggcactcttgagttaatgatt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32728119 |
tatatctggcactcttgagttaatgatt |
32728146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 32727734 - 32727819
Alignment:
| Q |
12 |
tatcatgagatgagagtactttacttacttaatctatcgtatttttcctgctagactcgtggtgctgtgaacatgacagtctttcc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32727734 |
tatcatgagatgagagtactttacttacttaatctatcgtatttttcctgctagactcgtggtgctgtgaacatgacagtctttcc |
32727819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University