View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20503_low_2 (Length: 352)
Name: NF20503_low_2
Description: NF20503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20503_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 34905937 - 34906253
Alignment:
| Q |
20 |
tgccgtatgtccagaggtaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaata |
119 |
Q |
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| T |
34905937 |
tgccgtatgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaata |
34906036 |
T |
|
| Q |
120 |
ccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaaatcactctcaattacaatgacataagatacnnnnnnntgcat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
34906037 |
ccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaaatcactctcaattacaatgacataaaatacaaaaaaatgcat |
34906136 |
T |
|
| Q |
220 |
aattattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34906137 |
aattattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaaccaaatgcagaactctgacctcca |
34906236 |
T |
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| Q |
320 |
aaagcagaggtcgtact |
336 |
Q |
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||||||||||||||||| |
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| T |
34906237 |
aaagcagaggtcgtact |
34906253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 34895435 - 34895745
Alignment:
| Q |
27 |
tgtccagaggtaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagtac |
126 |
Q |
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| T |
34895435 |
tgtccagaggtgccactatctgcttccactgtagctgagtaactagctattctacttccaccccgttgacctccaaatcctgactgcccaataccagtac |
34895534 |
T |
|
| Q |
127 |
ttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatg-aaaaatcactctcaattacaatgacataagatac-nnnnnnntgcataatta |
224 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34895535 |
ttccaaatgcttgagttggagtctgtgatcctgcataagaaaatatgaaaaaatcactctcaattacaatgacatgtgatacaaaaaaaatacataatta |
34895634 |
T |
|
| Q |
225 |
ttcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctccaaaagc |
324 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
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| T |
34895635 |
ttcaagtcccttacatcttaaaaattgaca-tatcacagagaagataaaattctaaaaactattgaactcaccaaatgcagaactctgacctacaaaagc |
34895733 |
T |
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| Q |
325 |
agaggtcgtact |
336 |
Q |
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|||||||||||| |
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| T |
34895734 |
agaggtcgtact |
34895745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 97 - 309
Target Start/End: Original strand, 34915640 - 34915854
Alignment:
| Q |
97 |
ctccaaatcctgactgcccaataccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaa-atcactctcaattacaat |
195 |
Q |
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|||||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
34915640 |
ctccaaatcccgactgcccaataccagtatttccaaaaaccggagcgggagtctgtgatcctgcacgagacaatatgaaaagatcactctcaattacaat |
34915739 |
T |
|
| Q |
196 |
gacataagatacnnnnnnn-tgcataattattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaacta |
294 |
Q |
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| T |
34915740 |
gacataagatacaaaaaaaatgcataattattcaagtcctttacatcttaaaaattgacattatcgtagagaagataaaattataaaaactattgaattc |
34915839 |
T |
|
| Q |
295 |
atcaaatgcagaact |
309 |
Q |
| |
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| T |
34915840 |
accaaatgcagaact |
34915854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 34909377 - 34909526
Alignment:
| Q |
56 |
tgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagtacttccaaatgcttgagtgggagtctgtgat |
155 |
Q |
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|||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||| | ||| ||||| || ||| |
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| T |
34909377 |
tgtagctgagtaactagctactctacttccacctcgttgtcctccaaatcccgactgcccaatatcagcatttccaaaacccggagcaggagtatgcgat |
34909476 |
T |
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| Q |
156 |
cctgcataagaaaatatgaaaa-atcactctcaattacaatgacataaga |
204 |
Q |
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|||||| ||| |||||||||| |||| |||||||||||||| ||||||| |
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| T |
34909477 |
cctgcacgagacaatatgaaaagatcagtctcaattacaatggcataaga |
34909526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 34909598 - 34909653
Alignment:
| Q |
264 |
agaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctcca |
319 |
Q |
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|||||||||||| ||||||||||||||| | | ||||| |||||||||||||||| |
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| T |
34909598 |
agaagataaaatcctaaaaactattgaaatcaccaaatatagaactctgacctcca |
34909653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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