View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20503_low_3 (Length: 273)

Name: NF20503_low_3
Description: NF20503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20503_low_3
NF20503_low_3
[»] chr1 (7 HSPs)
chr1 (15-273)||(34905614-34905872)
chr1 (17-187)||(34897062-34897236)
chr1 (22-193)||(39613154-39613328)
chr1 (22-107)||(43009025-43009110)
chr1 (207-273)||(34895301-34895363)
chr1 (60-152)||(32757822-32757916)
chr1 (109-147)||(28178833-28178871)
[»] chr4 (3 HSPs)
chr4 (66-193)||(29183104-29183234)
chr4 (38-154)||(15330056-15330171)
chr4 (60-154)||(32394180-32394276)
[»] chr2 (3 HSPs)
chr2 (72-187)||(32429897-32430016)
chr2 (97-154)||(45641708-45641765)
chr2 (109-154)||(38029600-38029645)
[»] chr5 (1 HSPs)
chr5 (109-154)||(28326234-28326279)
[»] chr3 (1 HSPs)
chr3 (60-154)||(39255314-39255408)
[»] chr8 (3 HSPs)
chr8 (42-154)||(8487589-8487700)
chr8 (65-193)||(27634487-27634610)
chr8 (38-88)||(20659414-20659464)
[»] chr7 (2 HSPs)
chr7 (27-83)||(2539004-2539060)
chr7 (33-81)||(30526086-30526134)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 34905614 - 34905872
Alignment:
Q  15 ggattggaacaataatcataaggttatacaaagttcataaaacttatatatatgcatataaaatagcattagtaagacagagaaaaccttaaaccacttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905614 ggattggaacaataatcataaggttatacaaagttcataaaacttatatatatgcatataaaatagcattagtaagacagagaaaaccttaaaccacttg 34905713  T
Q  115 aagtacttgtgtaattttaaattcataagcatagctcacaagataattaaaaccttaaatcacgcttcaaatacttataagtttaaactttaaattatca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905714 aagtacttgtgtaattttaaattcataagcatagctcacaagataattaaaaccttaaatcacgcttcaaatacttataagtttaaactttaaattatca 34905813  T
Q  215 aattattcaatttttaaaattaataaagaatgcacctttatctcccaaatgatagtcct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905814 aattattcaatttttaaaattaataaagaatgcacctttatctcccaaatgatagtcct 34905872  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 34897062 - 34897236
Alignment:
Q  17 attggaacaataatcataaggttatacaaagttcataaaacttatatatatgcatataaaatagcattagtaagacagagaaaaccttaaaccacttgaa 116  Q
    |||| ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  34897062 attgtaacaataatcacaagactatacaaagttcataaaacttatatatatgcatataaaacagcattagtaagacaaagaaaaccttaaatcacttgaa 34897161  T
Q  117 gtacttgtgtaattttaaattcataagcatagctcac----aagataattaaaaccttaaatcacgcttcaaata 187  Q
    |||||||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  34897162 gtacttgtgtaattttaaattcgtaagcatagctcacaagtaagataattaaaaccttaaatcacgcttcaaata 34897236  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 39613328 - 39613154
Alignment:
Q  22 aacaataatcataaggttatacaaagttcataaaacttatata-tatgcatataaaatagcattagtaagacagagaaaaccttaaaccacttgaagtac 120  Q
    |||| ||||| |||| ||||||||   |||||||||||||| | ||||| ||||||||||||||||||| |  |||||||||||||| ||||| || |||    
T  39613328 aacactaatcgtaagattatacaatactcataaaacttatacaatatgcctataaaatagcattagtaaaa--gagaaaaccttaaatcacttaaaatac 39613231  T
Q  121 ttgtgtaattttaaattcataagcatagctcac----aagataattaaaaccttaaatcacgcttcaaatacttata 193  Q
    |||||||| |||| |||||||| ||||||||||    ||||| |||||||||||||||||| |||||||| ||||||    
T  39613230 ttgtgtaaatttatattcataaccatagctcacaggtaagatgattaaaaccttaaatcacacttcaaatgcttata 39613154  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 43009025 - 43009110
Alignment:
Q  22 aacaataatcataaggttatacaaagttcataaaacttatatatatgcatataaaatagcattagtaagacagagaaaaccttaaa 107  Q
    |||| ||||| |||| |||| |||| ||||||||||| | ||||||||||||||||| |||| ||||||||| |||||||||||||    
T  43009025 aacactaatcgtaagattatgcaaaattcataaaactcaaatatatgcatataaaattgcatgagtaagacaaagaaaaccttaaa 43009110  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 34895301 - 34895363
Alignment:
Q  207 aattatcaaattattcaatttttaaaattaataaagaatgcacctttatctcccaaatgatagtcct 273  Q
    ||||||||||||||| ||||||||||||    |||||||||||||||||||||||| ||||||||||    
T  34895301 aattatcaaattatttaatttttaaaat----aaagaatgcacctttatctcccaattgatagtcct 34895363  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 32757822 - 32757916
Alignment:
Q  60 atatatatgcatataaaatagcattagtaagacagagaaaaccttaaa--ccacttgaagtacttgtgtaattttaaattcataagcatagctca 152  Q
    |||||||||| ||||||||||||| | ||| ||| |  ||| ||||||   |||||||| ||||||||||| |||||||||||||||||||||||    
T  32757822 atatatatgcttataaaatagcataactaaaacaaaagaaaacttaaatcacacttgaaatacttgtgtaaatttaaattcataagcatagctca 32757916  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 28178871 - 28178833
Alignment:
Q  109 cacttgaagtacttgtgtaattttaaattcataagcata 147  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  28178871 cacttgaaatacttgtgtaaatttaaattcataagcata 28178833  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 29183234 - 29183104
Alignment:
Q  66 atgcatataaaatagcattagtaagacagagaaaaccttaaaccacttgaagtacttgtgtaattttaaattcataagcatagctcac----aagataat 161  Q
    |||||||||||||||||||||| ||||| ||||||| ||||| |||||||| ||||||||||| |||||||||||||  ||||||| |    |||||| |    
T  29183234 atgcatataaaatagcattagtgagacaaagaaaacattaaatcacttgaaatacttgtgtaaatttaaattcataa-aatagctctcatttaagatagt 29183136  T
Q  162 taaaaccttaaatcacgcttcaaatacttata 193  Q
    |||||||||||||||| ||| |||||||||||    
T  29183135 taaaaccttaaatcacactttaaatacttata 29183104  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 15330171 - 15330056
Alignment:
Q  38 ttatacaaagttcataaaacttatatatatgcatataaaatagcattagtaagacagagaaaaccttaaa--ccacttgaagtacttgtgtaattttaaa 135  Q
    ||||||||| ||||||||||| | ||||||||||||||||||||||  ||||||||   ||||||||| |   | |||||| | ||||||||| ||||||    
T  15330171 ttatacaaaattcataaaactcaaatatatgcatataaaatagcataggtaagaca---aaaaccttatattactcttgaaatgcttgtgtaaatttaaa 15330075  T
Q  136 ttcataagcatagctcaca 154  Q
    ||| |||||||| ||||||    
T  15330074 ttcgtaagcataactcaca 15330056  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 32394180 - 32394276
Alignment:
Q  60 atatatatgcatataaaatagcattagtaagacagagaaaaccttaaac--cacttgaagtacttgtgtaattttaaattcataagcatagctcaca 154  Q
    ||||| |||| |||||||||||||  |||||| | | |||||||| ||   |||||||| ||||||| ||| |||||||||||||||||| ||||||    
T  32394180 atatacatgcgtataaaatagcataggtaagataaaaaaaacctttaattacacttgaaatacttgtataaatttaaattcataagcataactcaca 32394276  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 32430016 - 32429897
Alignment:
Q  72 ataaaatagcattagtaagacagagaaaaccttaaaccacttgaagtacttgtgtaattttaaattcataagcatagctcacaaga----taattaaaac 167  Q
    |||||||||||||||||||||| ||||||||||||| | |||||| |||||||| || |  ||||||| ||||||||||||||||     ||||||||||    
T  32430016 ataaaatagcattagtaagacaaagaaaaccttaaatctcttgaaatacttgtgcaaataaaaattcacaagcatagctcacaagtaaggtaattaaaac 32429917  T
Q  168 cttaaatcacgcttcaaata 187  Q
    ||||| |||| ||| |||||    
T  32429916 cttaagtcacacttgaaata 32429897  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 45641708 - 45641765
Alignment:
Q  97 aaaaccttaaaccacttgaagtacttgtgtaattttaaattcataagcatagctcaca 154  Q
    ||||||||||  |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  45641708 aaaaccttaacacacttgaaatacttatgtaaatttaaattcataagcatagctcaca 45641765  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 38029645 - 38029600
Alignment:
Q  109 cacttgaagtacttgtgtaattttaaattcataagcatagctcaca 154  Q
    ||||| || ||||||||||| |||||||||||||||||| ||||||    
T  38029645 cacttaaaatacttgtgtaaatttaaattcataagcataactcaca 38029600  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 28326279 - 28326234
Alignment:
Q  109 cacttgaagtacttgtgtaattttaaattcataagcatagctcaca 154  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||    
T  28326279 cacttgaaatacttgtgtaaatttaaattcataagcatagctcaca 28326234  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 39255314 - 39255408
Alignment:
Q  60 atatatatgcatataaaatagcattagtaagacagagaaaaccttaaac--cacttgaagtacttgtgtaattttaaattcataagcatagctcaca 154  Q
    ||||| ||||||||||||||||||  |||||| | |  ||||||||||   |||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  39255314 atatacatgcatataaaatagcataggtaagataaa--aaaccttaaagtacacttgaaatacttgtgtaaatttaaattcagaagcataactcaca 39255408  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 8487700 - 8487589
Alignment:
Q  42 acaaagttcataaaacttatatatatgcatataaaatagcattagtaagacagagaaaaccttaaac--cacttgaagtacttgtgtaattttaaattca 139  Q
    ||||| ||||||||| | | ||||||||||||||| || |||  |||||||| |  ||||||||||   |||||||| ||||||||||| ||||||||||    
T  8487700 acaaaattcataaaattcaaatatatgcatataaa-tatcataggtaagacaaa--aaaccttaaattacacttgaaatacttgtgtaaatttaaattca 8487604  T
Q  140 taagcatagctcaca 154  Q
    |||||| | ||||||    
T  8487603 taagcagaactcaca 8487589  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 27634610 - 27634487
Alignment:
Q  65 tatgcatataaaatagcattagtaagacagagaaaaccttaaaccacttgaagtacttgtgtaattttaaattcataagcatagctca----caagataa 160  Q
    ||||||||||||||||||||||||  | | |||||||||||||          ||||||||||| ||||| |||||||||||||| ||     |||||||    
T  27634610 tatgcatataaaatagcattagtacaataaagaaaaccttaaaa---------tacttgtgtaaatttaacttcataagcatagcacataagtaagataa 27634520  T
Q  161 ttaaaaccttaaatcacgcttcaaatacttata 193  Q
    ||||||||| |||||||  |||||||| |||||    
T  27634519 ttaaaacctcaaatcacatttcaaatagttata 27634487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 20659414 - 20659464
Alignment:
Q  38 ttatacaaagttcataaaacttatatatatgcatataaaatagcattagta 88  Q
    |||||| || ||||||||||| | |||||||||||||||||||||| ||||    
T  20659414 ttatacgaaattcataaaactcaaatatatgcatataaaatagcataagta 20659464  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 2539060 - 2539004
Alignment:
Q  27 taatcataaggttatacaaagttcataaaacttatatatatgcatataaaatagcat 83  Q
    |||||||| | ||||||| | ||||||||||| | |||||||||||| |||||||||    
T  2539060 taatcataggattatacacaattcataaaactcaaatatatgcatattaaatagcat 2539004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 30526086 - 30526134
Alignment:
Q  33 taaggttatacaaagttcataaaacttatatatatgcatataaaatagc 81  Q
    |||| ||||||||| |||||||| || | ||||||||||||||||||||    
T  30526086 taagattatacaaaattcataaatctcaaatatatgcatataaaatagc 30526134  T

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