View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20505_high_16 (Length: 323)

Name: NF20505_high_16
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20505_high_16
NF20505_high_16
[»] chr3 (10 HSPs)
chr3 (3-202)||(50093680-50093880)
chr3 (142-202)||(54378422-54378482)
chr3 (137-202)||(11559880-11559945)
chr3 (137-202)||(11569149-11569214)
chr3 (3-129)||(50816556-50816683)
chr3 (3-129)||(50859181-50859308)
chr3 (153-202)||(22604502-22604551)
chr3 (282-321)||(11559743-11559782)
chr3 (282-321)||(11569012-11569051)
chr3 (281-321)||(22604394-22604434)
[»] chr8 (6 HSPs)
chr8 (138-202)||(20990966-20991030)
chr8 (137-202)||(15075274-15075339)
chr8 (153-202)||(2751483-2751532)
chr8 (138-202)||(4975638-4975702)
chr8 (281-321)||(15075414-15075454)
chr8 (281-321)||(4975342-4975382)
[»] chr5 (8 HSPs)
chr5 (138-202)||(29069519-29069583)
chr5 (138-202)||(41249479-41249543)
chr5 (138-190)||(7032958-7033010)
chr5 (137-202)||(26708316-26708381)
chr5 (137-202)||(26978050-26978115)
chr5 (288-323)||(37193171-37193206)
chr5 (290-323)||(29069389-29069422)
chr5 (154-202)||(25860221-25860269)
[»] chr1 (8 HSPs)
chr1 (142-202)||(33372293-33372353)
chr1 (138-199)||(28007611-28007672)
chr1 (138-190)||(25878846-25878898)
chr1 (281-323)||(28007467-28007509)
chr1 (142-190)||(30936705-30936753)
chr1 (146-201)||(10917679-10917734)
chr1 (286-323)||(33372449-33372486)
chr1 (281-321)||(25878719-25878759)
[»] chr2 (8 HSPs)
chr2 (138-202)||(8907808-8907870)
chr2 (138-202)||(29454508-29454572)
chr2 (137-190)||(34214520-34214573)
chr2 (138-202)||(30870129-30870193)
chr2 (281-321)||(30870268-30870308)
chr2 (281-315)||(8909942-8909976)
chr2 (281-321)||(17354079-17354119)
chr2 (281-321)||(26353666-26353706)
[»] chr4 (4 HSPs)
chr4 (153-190)||(22433608-22433645)
chr4 (138-190)||(9591530-9591582)
chr4 (281-321)||(9591680-9591720)
chr4 (281-321)||(22433757-22433797)
[»] scaffold0092 (1 HSPs)
scaffold0092 (281-321)||(53997-54037)
[»] chr7 (4 HSPs)
chr7 (138-190)||(23429171-23429223)
chr7 (153-190)||(42594578-42594615)
chr7 (281-321)||(8543752-8543792)
chr7 (281-321)||(26957241-26957281)
[»] chr6 (2 HSPs)
chr6 (281-321)||(292360-292400)
chr6 (281-321)||(17371601-17371641)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 50093880 - 50093680
Alignment:
Q  3 tcaggcttctagtgagaactcaaggcattcttgatttgattaatg-aaaaaccaagggaaaacttggcaaagactgattcatcggagcacaaagcaagta 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50093880 tcaggcttctagtgagaactcaagacattcttgatttgattaatgcaaaaaccaagggaaaacttggcaaagactgattcatcggagcacaaagcaagta 50093781  T
Q  102 atgcctacaaagggcacaactaagcattcaacagagcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtatt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50093780 atgcctacaaagggcacaactaagcattcaacagagcaggcacaaatctagtgtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtatt 50093681  T
Q  202 g 202  Q
    |    
T  50093680 g 50093680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 54378482 - 54378422
Alignment:
Q  142 cacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  54378482 cacggatctagtgtggggacaatggggtcaagcgaccccacttgcctccacatgtgtattg 54378422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 11559945 - 11559880
Alignment:
Q  137 gcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  11559945 gcaggcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattg 11559880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 11569214 - 11569149
Alignment:
Q  137 gcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  11569214 gcaggcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattg 11569149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 50816683 - 50816556
Alignment:
Q  3 tcaggcttctagtgagaactcaaggcattcttgatttgattaatgaa-aaaccaagggaaaacttggcaaagactgattcatcggagcacaaagcaagta 101  Q
    |||||| |||| ||||||| ||||||| |||| |||||||||||| | ||| |||||| || ||| |   | ||||||||||| || ||||||||||| |    
T  50816683 tcaggcctctattgagaacacaaggcaatcttaatttgattaatggataaatcaagggcaaccttagaggaaactgattcatcagaacacaaagcaagca 50816584  T
Q  102 atgcctacaaagggcacaactaagcatt 129  Q
    |||||||||| ||||||||| |||||||    
T  50816583 atgcctacaatgggcacaaccaagcatt 50816556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 50859181 - 50859308
Alignment:
Q  3 tcaggcttctagtgagaactcaaggcattcttgatttgattaatgaa-aaaccaagggaaaacttggcaaagactgattcatcggagcacaaagcaagta 101  Q
    |||||| |||| ||||||| ||||||| |||| |||||||||||| | ||| |||||| || ||| |   | ||||||||||| || ||||||||||| |    
T  50859181 tcaggcctctattgagaacacaaggcaatcttaatttgattaatggataaatcaagggcaaccttagaggaaactgattcatcagaacacaaagcaagca 50859280  T
Q  102 atgcctacaaagggcacaactaagcatt 129  Q
    |||||||||| ||||||||| |||||||    
T  50859281 atgcctacaatgggcacaaccaagcatt 50859308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 22604551 - 22604502
Alignment:
Q  153 tgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  22604551 tgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattg 22604502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 11559743 - 11559782
Alignment:
Q  282 tagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  11559743 tagtgctcttagaaaactcattaggatccttcttaatttt 11559782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 11569012 - 11569051
Alignment:
Q  282 tagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  11569012 tagtgctcttagaaaactcattaggatccttcttaatttt 11569051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 22604394 - 22604434
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| |||||||||||| |||||||||||||||| ||||    
T  22604394 ctagtgctcttagaacacttattaggatccttcttagtttt 22604434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 20991030 - 20990966
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  20991030 caggcacggatctagtgtgggggcaacggggtcaagcgaccccacttgcctccacatgtgtattg 20990966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 15075274 - 15075339
Alignment:
Q  137 gcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  15075274 gcaggcacggatacaatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattg 15075339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 2751483 - 2751532
Alignment:
Q  153 tgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  2751483 tgtgggggcaatggggtcaagcgaccccacttgcctccacctgtgtattg 2751532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 4975702 - 4975638
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||  | | |||||||||||||||||||||||||||||||  ||| | |||||||||    
T  4975702 caggcacggatacaatatgggggcaatggggtcaagcgaccccacttgtatccacttgtgtattg 4975638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 15075454 - 15075414
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  15075454 ctagtgctcttagaacactcattaggatccttcttagtttt 15075414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 4975342 - 4975382
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| |||||||||||| |||||||||||||||| ||||    
T  4975342 ctagtgctcttagaacacttattaggatccttcttagtttt 4975382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 29069583 - 29069519
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  29069583 caggcacagatctagtgtgggggcaatggggtcaagcgaccccacttgcctccacatgggtattg 29069519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 41249479 - 41249543
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  41249479 caggcacggatctaatgtggggacaatggggtcaagtgaccccacttgcctccacatgtgtattg 41249543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 7033010 - 7032958
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  7033010 cagggacggatgtagtgtgggggcaatggggtcaaccgaccccacttgcctcc 7032958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 26708316 - 26708381
Alignment:
Q  137 gcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||   | |||| |||||||||||||||| |||||||||||||||| | |||||||||    
T  26708316 gcaggcacggaatcaatgtgagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattg 26708381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 26978050 - 26978115
Alignment:
Q  137 gcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||   | |||| |||||||||||||||| |||||||||||||||| | |||||||||    
T  26978050 gcaggcacggaatcaatgtgagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattg 26978115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 37193171 - 37193206
Alignment:
Q  288 tcttagaacactcattaggatccttcttaattttat 323  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37193171 tcttagaacactcattaggatccttcttagttttat 37193206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 29069389 - 29069422
Alignment:
Q  290 ttagaacactcattaggatccttcttaattttat 323  Q
    ||||||||||||||||||||||||||| ||||||    
T  29069389 ttagaacactcattaggatccttcttagttttat 29069422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 25860269 - 25860221
Alignment:
Q  154 gtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    ||||||||||||||||||| |||| |||||| ||||| | |||||||||    
T  25860269 gtgggggcaatggggtcaaccgactccacttccctccacttgtgtattg 25860221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 33372293 - 33372353
Alignment:
Q  142 cacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33372293 cacggatctagggtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattg 33372353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 28007672 - 28007611
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgta 199  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  28007672 caggcacggatctagtgtgggggcaatggagtcaagccaccccacttgcctccacatgtgta 28007611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 25878898 - 25878846
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    |||||||||||  | |||||| |||||||||||||||||||||||||||||||    
T  25878898 caggcacggatacaatgtgggagcaatggggtcaagcgaccccacttgcctcc 25878846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 28007467 - 28007509
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaattttat 323  Q
    |||||| ||||||||||||||||||||||||||||| ||||||    
T  28007467 ctagtgctcttagaacactcattaggatccttcttagttttat 28007509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 30936705 - 30936753
Alignment:
Q  142 cacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    |||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  30936705 cacggatccaatgtgggggcaatggagtcaaccgaccccacttgcctcc 30936753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 10917679 - 10917734
Alignment:
Q  146 gatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtatt 201  Q
    ||||||||||||| | ||||||||||   |||||||||||||||| ||||||||||    
T  10917679 gatctagtgtgggaggaatggggtcatttgaccccacttgcctccacatgtgtatt 10917734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 33372486 - 33372449
Alignment:
Q  286 gttcttagaacactcattaggatccttcttaattttat 323  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33372486 gttcttagaacacccattaggattcttcttaattttat 33372449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 25878719 - 25878759
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| |||||||||||| |||||||||||||||| ||||    
T  25878719 ctagtgctcttagaacacttattaggatccttcttagtttt 25878759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 8907808 - 8907870
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  8907808 caggcacggatctagtgtggg--caatggggtcaagcgaccccacttgcctccacatgtgtattg 8907870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 29454572 - 29454508
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| |  ||||||||||    
T  29454572 caggcacgaatctagtgtgggagcaatggggtcaagcgaccccacttgccttcaaatgtgtattg 29454508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 34214573 - 34214520
Alignment:
Q  137 gcaggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    ||||| ||||||  |||||||||||||||||||||| |||||||||||||||||    
T  34214573 gcagggacggatgcagtgtgggggcaatggggtcaaccgaccccacttgcctcc 34214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 30870129 - 30870193
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctccgcatgtgtattg 202  Q
    |||||||||||  | ||||||||||||||||||||| |||||||||||||| | | |||||||||    
T  30870129 caggcacggatacaatgtgggggcaatggggtcaagtgaccccacttgccttcacttgtgtattg 30870193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 30870308 - 30870268
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  30870308 ctagtgctcttagaacactcattaggatccttcttagtttt 30870268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 8909976 - 8909942
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttctt 315  Q
    |||||| ||||||||||||||||||||||||||||    
T  8909976 ctagtgctcttagaacactcattaggatccttctt 8909942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 17354079 - 17354119
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  17354079 ctagtgctcttagaacactcattaagatccttcttagtttt 17354119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 26353706 - 26353666
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| |||||||||||||||||||||| |||||| ||||    
T  26353706 ctagtgctcttagaacactcattaggatcattcttagtttt 26353666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 22433608 - 22433645
Alignment:
Q  153 tgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22433608 tgtgggggcaatggggtcaagcgaccccacttgcctcc 22433645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 9591530 - 9591582
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    |||||| ||||  |||||||||||||||||||||| | |||||||||||||||    
T  9591530 caggcatggatagagtgtgggggcaatggggtcaaccaaccccacttgcctcc 9591582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 9591720 - 9591680
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  9591720 ctagtgctcttagaacactcattatgatccttcttagtttt 9591680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 22433797 - 22433757
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| |||||||||||||||||| |||||||||| ||||    
T  22433797 ctagtgctcttagaacactcattagaatccttcttagtttt 22433757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 53997 - 54037
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  53997 ctagtgctcttagaacactcattaggatcctttttaatttt 54037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 23429223 - 23429171
Alignment:
Q  138 caggcacggatctagtgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||||    
T  23429223 cagggacggatgcagtgtgggggcaacggggtcaaccgaccccacttgcctcc 23429171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 42594615 - 42594578
Alignment:
Q  153 tgtgggggcaatggggtcaagcgaccccacttgcctcc 190  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  42594615 tgtggtggcaatggggtcaaccgaccccacttgcctcc 42594578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 8543792 - 8543752
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    ||||||||||||||||||| |||||||||||| ||| ||||    
T  8543792 ctagtgttcttagaacactaattaggatcctttttagtttt 8543752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 26957241 - 26957281
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| |||||||||||||||||| ||||||||| |||||    
T  26957241 ctagtgctcttagaacactcattagaatccttcttgatttt 26957281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 292360 - 292400
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||| ||||||||||||| ||||||||||||||||    
T  292360 ctagtgctctgagaacactcattaagatccttcttaatttt 292400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 17371641 - 17371601
Alignment:
Q  281 ctagtgttcttagaacactcattaggatccttcttaatttt 321  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  17371641 ctagtgctcttagaacacacattaagatccttcttaatttt 17371601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University