View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_high_19 (Length: 312)
Name: NF20505_high_19
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 80 - 292
Target Start/End: Original strand, 8239985 - 8240206
Alignment:
| Q |
80 |
acaaagctcctctttgatctcttccaaaattcccatatcttccacatccttgacattttcatatatagcttctagtctctactccgtatacaagaggtgc |
179 |
Q |
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| T |
8239985 |
acaaagctcctctttgatctcttccaaaattcccatatcttccacatccttgacattttcatatatagcttctagtctctaccccgtatgcaagaggtgc |
8240084 |
T |
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| Q |
180 |
tggagtgtcaagtaactccttaatcgtattctcatcgaaccaaatatctttcccacgaacatatgacttgaataaa---------attctcttttggtat |
270 |
Q |
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| T |
8240085 |
tggagtgtcaagtaactcattaatcgtattctcatcgaaccaaatatctttcccacgaacatatgacttgaacatatcttttttctttctcttttggtat |
8240184 |
T |
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| Q |
271 |
gcattcgaataatattcaatgg |
292 |
Q |
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| T |
8240185 |
gcattcgaataaaattcaatgg |
8240206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 8238377 - 8238448
Alignment:
| Q |
12 |
atgaaataacaaataaaaccacggttaatagatgaatgagcccttttatttttcttctatatatccatacaa |
83 |
Q |
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| T |
8238377 |
atgaaataacaaatataaccacggttaatagatgaatgagccctttcatttttcttctatatatccatacaa |
8238448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 34837475 - 34837546
Alignment:
| Q |
12 |
atgaaataacaaataaaaccacggttaatagatgaatgagcccttttatttttcttctatatatccatacaa |
83 |
Q |
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| T |
34837475 |
atgaaataacaaataaaaccacagttaatagatgaatgagtcctttcatttttcttctatatatccatacaa |
34837546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 28966089 - 28966137
Alignment:
| Q |
35 |
gttaatagatgaatgagcccttttatttttcttctatatatccatacaa |
83 |
Q |
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| T |
28966089 |
gttaatagatgaatgagacctttcatttttcttctatatatccatacaa |
28966137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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