View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_high_31 (Length: 246)
Name: NF20505_high_31
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_high_31 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 43072988 - 43073216
Alignment:
| Q |
19 |
tttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaa |
118 |
Q |
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| T |
43072988 |
tttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaa |
43073087 |
T |
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| Q |
119 |
ttgcttgagcaaggtatgatagaacaagttgatacatgaattatttttattattacttattatacttgagcataat-annnnnnnnatatcctctataga |
217 |
Q |
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| T |
43073088 |
ttgcttgagcaaggtatgatagaacaagttgatacatgaattatttttattattacttattatacttgagcataatgattttttttatatcctctataga |
43073187 |
T |
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| Q |
218 |
catttgtcaatcagaagagggccctagtt |
246 |
Q |
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| T |
43073188 |
catttgtcaatcagaagagggccctagtt |
43073216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 30990657 - 30990429
Alignment:
| Q |
19 |
tttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaa |
118 |
Q |
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| T |
30990657 |
tttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaa |
30990558 |
T |
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| Q |
119 |
ttgcttgagcaaggtatgatagaacaagttgatacatgaattatttttattattacttattatacttgagcataat-annnnnnnnatatcctctataga |
217 |
Q |
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| T |
30990557 |
ttgcttgagcaaggtatgatagaacaagttgacacatgaattatttttattattacttattatacttgagcataatgattttttttatatcctctataga |
30990458 |
T |
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| Q |
218 |
catttgtcaatcagaagagggccctagtt |
246 |
Q |
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| T |
30990457 |
catttgtcaatcagaagagggccctagtt |
30990429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 33134605 - 33134833
Alignment:
| Q |
19 |
tttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaa |
118 |
Q |
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| T |
33134605 |
tttaacacccaccacgattgagcaacttatatgcactcaagattggctcaaaggagcatcttcatccttgatgagaactgaagattttgagaatcttgag |
33134704 |
T |
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| Q |
119 |
ttgcttgagcaaggtatgatagaacaagttgatacatgaattatttttattattacttattatacttgagcataat-annnnnnnnatatcctctataga |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| | ||||| | | |||| |
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| T |
33134705 |
ttgcttgagcaaggtatgatagaacaagtttatacatgaattatttttattattacttactttacttgagcataatgaaattttttatatcttttgtaga |
33134804 |
T |
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| Q |
218 |
catttgtcaatcagaagagggccctagtt |
246 |
Q |
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| T |
33134805 |
catttgtcaatcggaagagggccctagtt |
33134833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 33133207 - 33133334
Alignment:
| Q |
50 |
tgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaattgcttgagcaaggtatgatagaacaagttg |
149 |
Q |
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|||||| |||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33133207 |
tgcactgaagattcgctaaaatgagcatcttcatccttgattacaactgaagattttgagaatcttgagttgcttgagcaaggtatgatagaacaagttg |
33133306 |
T |
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| Q |
150 |
atacatgaattatttttattattactta |
177 |
Q |
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| T |
33133307 |
atacataaattatttttattattactta |
33133334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 4457540 - 4457369
Alignment:
| Q |
23 |
acacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaattgc |
122 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
4457540 |
acacctaccacggttgaggcacttatatgcacttaagattggctcaaaggagcatcttcatccttgattacaactgaagattttgaaaatcttgagttgc |
4457441 |
T |
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| Q |
123 |
ttgagcaaggtatgatagaacaagttgatacatgaattatttttattattacttattatacttgagcataat |
194 |
Q |
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| T |
4457440 |
ttgagcaaggtatgatagaacaagttgatacatgaattatttttactatttcttactatacttgagcataat |
4457369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 7875388 - 7875292
Alignment:
| Q |
19 |
tttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatctt |
115 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
7875388 |
tttaactcctacctcaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcgtccttgattacaactgaagattttgagaatctt |
7875292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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