View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_high_7 (Length: 404)
Name: NF20505_high_7
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 4838946 - 4838570
Alignment:
| Q |
11 |
cataggttgaagtttaaaacttttctcaccttcttaataatgtgtctgtagggatcaaaccagagtctttctctacaaacttagtgtttaaaaaacttaa |
110 |
Q |
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| T |
4838946 |
cataggttgaagtttaaa-cttttctcaccttcttaataatgtgtctgtagggatcaaaccagagtctttctctacaaacttagtgtttaaaaaacttaa |
4838848 |
T |
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| Q |
111 |
ctacacttgataatttaagactttgaatttcttttttcaaatttctccaacttagagcaacttgaagtggggaccaggccagtgaatgaaggacagagca |
210 |
Q |
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| T |
4838847 |
ctacacttgataatttaagactttgaatttcttttttcaaatttctccaacttagagcaacttgaagtggggaccaggccagtgaatgaaggacagagca |
4838748 |
T |
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| Q |
211 |
catagagtctagaggaggaagatgaacagtgatgtggtcgaaaatgagagttgaaaagtagtcatgcagagtccataaatatatgtgcagtgcagctctt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4838747 |
catagagtctagaggaggaagatgaacagtgatgtggtcgaaaatgagagttgaaaagtagtcatgcagagcccataaatatatgtgcagtgcagctctt |
4838648 |
T |
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| Q |
311 |
cttagctgtctctcctgtcctctattctatggttttcatgtgctcctcgacatggtaacaactaattacagttgctat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4838647 |
cttagctgtctctcctgtcctctattctatggttttcatgtgctcctcgacatggcaacaactaattacagttgctat |
4838570 |
T |
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