View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_14 (Length: 345)
Name: NF20505_low_14
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 45068309 - 45068624
Alignment:
| Q |
15 |
gacatgttaacacgaaatatttgaatataacttgatgtgttagtgtcgtacggacaccaaacacagctttgatgtgaagtgtcaatgctacatagatgat |
114 |
Q |
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| T |
45068309 |
gacatgttaacacgaaatatttgaatataacttgatgtgttagtgtcgtagggacaccaaacacagctttgatgtgaagtgtcaatgctacatagatgat |
45068408 |
T |
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| Q |
115 |
agtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccc |
214 |
Q |
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| T |
45068409 |
agtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccc |
45068508 |
T |
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| Q |
215 |
tgcattttgaataacaataaaacaaaatcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttg |
314 |
Q |
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| T |
45068509 |
tgcattttgaacaacaataaaacaaaatcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttg |
45068608 |
T |
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| Q |
315 |
ttggaaccaacatagt |
330 |
Q |
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| T |
45068609 |
ttggaaccaacatagt |
45068624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 65 - 330
Target Start/End: Original strand, 3737919 - 3738182
Alignment:
| Q |
65 |
cggacaccaaacacagctttgatgtgaagtgtcaatgcta--catagatgatagtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtc |
162 |
Q |
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| T |
3737919 |
cggacatcaaatacggctttgatgtgaagtctcagtgctatacatagatgatagtcttgactcttgcatgttcagcatagatgaatttgcgattcttgtc |
3738018 |
T |
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| Q |
163 |
cgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttgaataacaataaaacaaaatcaaaatcatgcaattgaatt |
262 |
Q |
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| T |
3738019 |
cgccaacaacgctggtataagggaatcaagcacactttgaacgcatgctctctgcattcacaacaatggttaaacaacataaaaatcatggaattcaatt |
3738118 |
T |
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| Q |
263 |
gagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaaccaacatagt |
330 |
Q |
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| T |
3738119 |
aaattaaagtgtgtg----tggaagaaaaagtgaatgacctgaatggtgtggttggaaccaacatagt |
3738182 |
T |
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