View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_15 (Length: 331)
Name: NF20505_low_15
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 385220 - 385507
Alignment:
| Q |
12 |
atgaagtcaactaattgtttaggtatttcattttggtctctctactgtcctatatccttcctctgctggatgccctgtaatattgacaatggcaaacttg |
111 |
Q |
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| T |
385220 |
atgaagtcaactaattgtttaggtatttcattttggtctctctactgtcctatatccttcatctgctggatgccctgtaatattgacaatggcaaacttg |
385319 |
T |
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| Q |
112 |
gtcaattgtctcaatattgagaacaaacagcttttttcattgatacagtattttccatatttactaaaatattatggaaaagttataattcttttggaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
385320 |
gtcaattgtctcaatattgagaacaaacagcttttttctttgatacagtattttccatatttactaaaatattatggaaaagttataattcttttggaat |
385419 |
T |
|
| Q |
212 |
tattcttctgcccgtagtcctgcctcctttgtagctaaagaatgaggcatacaaagtgggcatcacagtgccataagctgtccagtgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
385420 |
tattcttctgcccgtagtcctgcctcctttgtagctaaagaatgaggcatacgaagtgggcatcgcagtgccataagctgtccagtgt |
385507 |
T |
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