View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_18 (Length: 317)
Name: NF20505_low_18
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 126 - 301
Target Start/End: Complemental strand, 46131644 - 46131469
Alignment:
| Q |
126 |
aaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattataaatagcccacacggcctccttcctaatctcgaa |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46131644 |
aaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattacaaatagcccacacggcctccttcctaatctcgaa |
46131545 |
T |
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| Q |
226 |
gtcagcctttgtgagacggacaagagaactaataagatcggcatcaatgacatcctgcagaaatgatcctaataat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46131544 |
gtcagcctttgtgagacggacaagagaactaataagatcggcatcaatgacatcctgcagaaatgatcctaataat |
46131469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 126 - 301
Target Start/End: Complemental strand, 46704778 - 46704603
Alignment:
| Q |
126 |
aaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattataaatagcccacacggcctccttcctaatctcgaa |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || || |
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| T |
46704778 |
aaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattagaaatagcccacagagcctccttcctaatgtcaaa |
46704679 |
T |
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| Q |
226 |
gtcagcctttgtgagacggacaagagaactaataagatcggcatcaatgacatcctgcagaaatgatcctaataat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||| |
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| T |
46704678 |
gtcagcctttgtgagacggacaagagaactaataagatcagcatcaatgacatcctgcgcaaaagatcataataat |
46704603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 126 - 301
Target Start/End: Complemental strand, 46125987 - 46125812
Alignment:
| Q |
126 |
aaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattataaatagcccacacggcctccttcctaatctcgaa |
225 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||| ||||| ||||||| ||||||||||| || ||||| |
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| T |
46125987 |
aaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcctgatgtcgaa |
46125888 |
T |
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| Q |
226 |
gtcagcctttgtgagacggacaagagaactaataagatcggcatcaatgacatcctgcagaaatgatcctaataat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
46125887 |
gtcagcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataat |
46125812 |
T |
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