View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_19 (Length: 315)
Name: NF20505_low_19
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_19 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 3818352 - 3818054
Alignment:
| Q |
18 |
agatcaactatctgtttttatgaatttttgactcagctatccagtttcattacattagaatggggttgttgtttgcaagataatagtctcaatagaaaa- |
116 |
Q |
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| T |
3818352 |
agatcaactctgtgtttttatgaatttttgactcagctatccagtttcattacattagaatggggttgttgtttgctagataatagtctcaatagaaaaa |
3818253 |
T |
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| Q |
117 |
gttcagattgaatgtctattatgattattattttttacaacaaattattatgttcttaagaacttgtaaactgatttggttaaataagctggtttaggtc |
216 |
Q |
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| T |
3818252 |
gttcagattgaatgtctattttgattattatttttgacaacaaattattatgttcttaagaacctgtaaactgatttggttaaataagctggtttaggtc |
3818153 |
T |
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| Q |
217 |
ttgtgtcacacgagtcgtgtgtagttgcagctttgagtacgaatgctcatggtacagtctaactgtctagtgatggagtaataatttaaaggattaaat |
315 |
Q |
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| T |
3818152 |
ttgtgtcacacgagtcgtgtgtagttgcagctttgagtacgtatgctcatggtacagtctaactgtctagtgatggagtaataatttaaaggattaaat |
3818054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 47339527 - 47339814
Alignment:
| Q |
28 |
tctgtttttatgaatttttgactcagctatccagtttcattacattagaatggggttgttgtttgcaagataatagtctcaatagaaaagttcagattga |
127 |
Q |
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| T |
47339527 |
tctgtttttatgaatttttgactcagctatccagtttcattacattagaatggggttgttgtttgcaagataatagtctcaggagaaaagttcagattga |
47339626 |
T |
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| Q |
128 |
atgtctattatgattattattttttacaacaaattattatgttcttaagaacttgtaaactgatttggttaaataagctggtttaggtcttgtgtcacac |
227 |
Q |
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| T |
47339627 |
atgtctattatggttaatatttttgacaacaaattattatgttcttaagaacttgtaaactgatttggttagataagctggtttaggttttgtgtcacac |
47339726 |
T |
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| Q |
228 |
gagtcgtgtgtagttgcagctttgagtacgaatgctcatggtacagtctaactgtctagtgatggagtaataatttaaaggattaaat |
315 |
Q |
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| T |
47339727 |
gagtcgtgtgtagttgcagctttgagtacgtacgctcatggtacagtctaactgtctagtgatggagtaataatttaaaggattaaat |
47339814 |
T |
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