View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20505_low_2 (Length: 669)
Name: NF20505_low_2
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 3239302 - 3238935
Alignment:
| Q |
18 |
cctatatgaaattataagaaaaaagaaaattaaacaaaggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcatataatgatgag |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3239302 |
cctatatgaaattataagaaaaaaggaaattgaacaaaggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcata--atgatgag |
3239205 |
T |
|
| Q |
118 |
aaatggatccaaaatcaatggcttctggatttgaaggaataaccatcttcctcatttcaatgtttttatagctccttcaacatcttaattctcttcaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3239204 |
aaatggatccaaaatcaatggcttctggatttgaaggaataaccatcttcctcatttcaatgtttttatagctccttcaacgtcttaattctcttcaaag |
3239105 |
T |
|
| Q |
218 |
gtactcctattgttttatttattttttctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3239104 |
gtactcctattgttttatttattttatctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctt |
3239005 |
T |
|
| Q |
318 |
tgtattcttataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3239004 |
tgtattcttataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
3238935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 372 - 659
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
372 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
|
| Q |
472 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
|
| Q |
572 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University