View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_22 (Length: 299)
Name: NF20505_low_22
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 51360405 - 51360685
Alignment:
| Q |
1 |
tgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcatgggat |
100 |
Q |
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| T |
51360405 |
tgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcatgggat |
51360504 |
T |
|
| Q |
101 |
tgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaatgtcttgagtaagttaatcaaataacgaacttgtttaacgtaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
51360505 |
tgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaatgtcttgagtaagttaatcaaataatgaacttgtttaatgtaata |
51360604 |
T |
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| Q |
201 |
ctttaccaacaactgaattatgccaaagaggatgcatgtgttgagacgattcatatatgtatcggagatgaaccctccaac |
281 |
Q |
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| T |
51360605 |
ctttaccaacaactgaattatgccaaagaggatgcatgtgttgagacgattcatatatgtatcggagatgaaccctccaac |
51360685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 51351036 - 51351145
Alignment:
| Q |
1 |
tgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcatgggat |
100 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||| | |||||||| |||| |||||||||||||||| |||||||| |
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| T |
51351036 |
tgcaagcaagtatatcgaagcgtagaagaacaaagcttttgtgacatgcaaacaactttgttttccac--agttgtggctgaagtttctcagcatgggat |
51351133 |
T |
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| Q |
101 |
tgaatcacaagt |
112 |
Q |
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| T |
51351134 |
tgaatcacaagt |
51351145 |
T |
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