View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20505_low_24 (Length: 283)
Name: NF20505_low_24
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_24 |
 | |
|
| [»] scaffold0092 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 50093367 - 50093100
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50093367 |
atataaactattcttatatttgttgaaaaaggttgtgact------acgttggtggtgaaaaa-taattaattatagttatatttttaatactatgttag |
50093275 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
50093274 |
aaatggacaaatattttttaaaaaatcaacattttaggacaattgtaagtataacttatataattttcgcacgcttacgcgtttataaaatttaatataa |
50093175 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttctagattcgtcgaagcaatggagagaccgagaataat |
275 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
50093174 |
atttttatgatataatttgaccccatttattaaaatttctagattcgtcggtgcaatagagagactgagaataat |
50093100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54378121 - 54377885
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaag-gttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgtta |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||||| | || |
|
|
| T |
54378121 |
atataaactattcttatatttgttaaaaaaatgttgtgattgacgctacgttggtggtcaaaaa-taattaattatggttatattttttatactccgcta |
54378023 |
T |
|
| Q |
100 |
gaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatata |
199 |
Q |
| |
|
||| | ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| || ||||||| ||| ||||| |
|
|
| T |
54378022 |
gaacttgacaaatattttt-aaaaaatcaacattttagggcaattatatatataacttgtataactttcacacgcttacacatttataaagttttatata |
54377924 |
T |
|
| Q |
200 |
aatttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
54377923 |
aatttttatgatataacttgaccccacttattaaaattt |
54377885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 11559581 - 11559340
Alignment:
| Q |
2 |
tataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttaga |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||| ||||||| ||| | | |||| |
|
|
| T |
11559581 |
tataaattattcttatatttgttgaaaaaggttgtgactgatgctacgttggtggtgaaaaaataattaat-atggttgtattttttatagtctactaga |
11559483 |
T |
|
| Q |
102 |
aatggacaaatattttttaaaaaa----tcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaata |
197 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||| ||| ||| |
|
|
| T |
11559482 |
aatggacaaatatttaaaaaaaaaaaaatcaacattttaggacaattataaatataacttgtataattttcgcacgcttacgcgtttataaagttttata |
11559383 |
T |
|
| Q |
198 |
taaatttttatgatataatttgacctcacttgttaaaatttct |
240 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
11559382 |
taaatttttatgatataacttgactgcacttattaaaatttct |
11559340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 11568850 - 11568609
Alignment:
| Q |
2 |
tataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttaga |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||| ||||||| ||| | | |||| |
|
|
| T |
11568850 |
tataaattattcttatatttgttgaaaaaggttgtgactgatgctacgttggtggtgaaaaaataattaat-atggttgtattttttatagtctactaga |
11568752 |
T |
|
| Q |
102 |
aatggacaaatattttttaaaaaa----tcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaata |
197 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||| ||| ||| |
|
|
| T |
11568751 |
aatggacaaatatttaaaaaaaaaaaaatcaacattttaggacaattataaatataacttgtataattttcgcacgcttacgcgtttataaagttttata |
11568652 |
T |
|
| Q |
198 |
taaatttttatgatataatttgacctcacttgttaaaatttct |
240 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
11568651 |
taaatttttatgatataacttgactgcacttattaaaatttct |
11568609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 22604225 - 22603981
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| | | ||||| |||||||||| ||||||||| ||||||||||| ||||| | |||| |
|
|
| T |
22604225 |
atataaattattcttatatttgttgaaaaaggttgtaattgac-ctatgttgggggtgaaaaaa--attaattatggttatattttttatactctattag |
22604129 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||| |||| ||| ||||| | ||||||||||||||||||||| | ||||| ||| |||||| |
|
|
| T |
22604128 |
aaatggacaaata-ttttaaacaaatcaacattttagggtaattataaatataattggtataattttcgcacgcttacgcgtgtataatgttttatataa |
22604030 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||| ||| |||| |
|
|
| T |
22604029 |
atttttatgatataacttgacctcacttatcaaaatttctggatccgtc |
22603981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 33757128 - 33756919
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaaggtt--gtgactgacgccacgttggtggtg-aaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||| |||| ||||||||| |||||||||||||| | |||||||||||| ||||| ||| | |
|
|
| T |
33757128 |
taaactatttttatatttgttaaaaaaggttatgtgattgaca-----ttggtggtgcaaaaaataattaatcagagttatatttttcatactccgttgg |
33757034 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||| |||||| || ||||||| ||||||| | |||||| ||| |||| || |||||||| |||||||||| ||||| ||||| |||||| |
|
|
| T |
33757033 |
aaatgga-aaatatattaaaaaaaattaacatttcaaagcaattataaacataatttacataatttttgcacgcttacgagtttatataattttatataa |
33756935 |
T |
|
| Q |
201 |
atttttatgatataat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33756934 |
atttttatgatataat |
33756919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 54783584 - 54783491
Alignment:
| Q |
50 |
ttggtggtgaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaatt |
144 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||| ||| ||||| | ||||||||| ||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
54783584 |
ttggtggttgaaaaataattaattatggttgtatgttttatactcggcaagaaatggaaaaata-tttataaaaaatcaacattttagagcaatt |
54783491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 29069211 - 29068980
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
29069211 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgttacgttggtggtgaaaaaataattaattatagttatattttttataccatgctag |
29069112 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||| |||||| |
|
|
| T |
29069111 |
aaatggacaaatatttttaaaaaaa--attattttagggcaattataagtataacttgtataattttcgcacgcttacgcgtttataaagttttatataa |
29069014 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaa |
234 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
29069013 |
atttttatgatataagttgaccccacttattaaa |
29068980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 26708736 - 26708951
Alignment:
| Q |
24 |
tgaaaaaggttgtgactgacgccacgttggtggtgaaaa-aataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaa |
122 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||| |||||||||| || || || |||||||||| |||||||||| ||| |
|
|
| T |
26708736 |
tgaaaaagattgtgactggcgctacgttagtggtgaaaaaaataattaattatgattatattttttattctctgctagaaatggataaatatttttaaaa |
26708835 |
T |
|
| Q |
123 |
aaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataatttgacc |
222 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| | ||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
26708836 |
aaatcaacattttagggcaattataaatataacttgtataattttcgcaagcttacacgtttataaagttttatataaatttttatgatataacttgacc |
26708935 |
T |
|
| Q |
223 |
tcacttgttaaaattt |
238 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
26708936 |
ccacttattaaaattt |
26708951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 26978470 - 26978685
Alignment:
| Q |
24 |
tgaaaaaggttgtgactgacgccacgttggtggtgaaaa-aataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaa |
122 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||| |||||||||| || || || |||||||||| |||||||||| ||| |
|
|
| T |
26978470 |
tgaaaaagattgtgactggcgctacgttagtggtgaaaaaaataattaattatgattatattttttattctctgctagaaatggataaatatttttaaaa |
26978569 |
T |
|
| Q |
123 |
aaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataatttgacc |
222 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| | ||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
26978570 |
aaatcaacattttagggcaattataaatataacttgtataattttcgcaagcttacacgtttataaagttttatataaatttttatgatataacttgacc |
26978669 |
T |
|
| Q |
223 |
tcacttgttaaaattt |
238 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
26978670 |
ccacttattaaaattt |
26978685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 37193029 - 37192868
Alignment:
| Q |
77 |
gttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgctt |
176 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
37193029 |
gttatattttttatactctgctagaaatggacaaatatttttttaaaaatcaacattttaggacaattataaatataacttgtataattttcgcacgctt |
37192930 |
T |
|
| Q |
177 |
acccacttataaaatttaatataaatttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
|| | ||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
37192929 |
acgcgtttataaagttttatataaatttttatgatataacttgacctcacttattaaaattt |
37192868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 41249847 - 41250013
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||| ||||| || ||| |
|
|
| T |
41249847 |
atataaactattcttatatttgttgaaaaag-ttgtgactgacgctatgttagtggtgaaaaaataattaattatggttatattttttatactctgctag |
41249945 |
T |
|
| Q |
101 |
aaatggacaaata-ttttttaaaaaatcaacattttagggcaattgtaagtataacttgtataatttt |
167 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| |||| | ||||| ||| |||||||||||||||||| |
|
|
| T |
41249946 |
aaatggataaatattttttttaaaaatcaacaatttaagacaattataaatataacttgtataatttt |
41250013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 7031374 - 7031255
Alignment:
| Q |
47 |
acgttggtggt-gaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattg |
145 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||| ||| || |||||| ||||||||| ||||| |||||| |
|
|
| T |
7031374 |
acgttggtggttgaaaaaataattaattaaggttatattttttatactctactagaaatg--aaaaaatgttttaagaaatcaacagtttagagcaatta |
7031277 |
T |
|
| Q |
146 |
taagtataacttgtataatttt |
167 |
Q |
| |
|
|| |||||||| ||||||||| |
|
|
| T |
7031276 |
caaatataacttatataatttt |
7031255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28007305 - 28007068
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| ||||||||||| ||||| || ||| |
|
|
| T |
28007305 |
atataaactattcttatatttgttgaaaaagattgtaactgacactacgttggtgatgaaaaaataattaattatggttatattttttatactctgctag |
28007206 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |||||| ||| |||||||| ||||||||||||| |||||| | ||||||||||| ||||| |
|
|
| T |
28007205 |
aaatggacaaatattttaaaaagaatcaacattttagagcaattataaatataacttatataattttcgcatgcttacgtatttataaaattttatatat |
28007106 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
28007105 |
atttttatgatataacttgacctcacttattaaaattt |
28007068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10918014 - 10918253
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
10918014 |
atattaactattcttatatttgttgaaaaagcttgtgcctgacgctatgttggtggtgaaaaaataattaattaaggttatattttttatactccgctag |
10918113 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| | ||||||| ||| |||||| |
|
|
| T |
10918114 |
aaattgacaaatatttttaaaaaaatcaacattttagagcaattataaatataacttgtataattttcgcacacttacgcgtttataaagttttatataa |
10918213 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttct |
240 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
10918214 |
attttcatgatataacttgaccccacttattaaaatttct |
10918253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 25878550 - 25878305
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| | | |||||||||||||||| |||||||||| ||||||||||| ||||| | |||| |
|
|
| T |
25878550 |
atataaattattcttatatttgttgaaaaaggttgtaattgac-ctatgttggtggtgaaaaaa-aattaattatggttatattttttatactctattag |
25878453 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||| |||| ||| ||||| | |||||||||| |||||||||| | ||||| ||| |||||| |
|
|
| T |
25878452 |
aaatggacaaata-ttttaaacaaatcaacattttagggtaattataaatataaatggtataatttttgcacgcttacgcgtgtataatgttttatataa |
25878354 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
||||||||||||||| |||||| ||||| | ||||||||| ||| |||| |
|
|
| T |
25878353 |
atttttatgatataacttgaccccacttatcaaaatttctggatccgtc |
25878305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 33372687 - 33372818
Alignment:
| Q |
106 |
gacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttt |
205 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||| || ||| ||| ||| ||||||||||| |
|
|
| T |
33372687 |
gacaaatatttattaaaaaatcaacattt-agggcaattataaatataatttgtataattttcgcacg------catttagaaagttttatataaatttt |
33372779 |
T |
|
| Q |
206 |
tatgatataatttgacctcacttgttaaaatttctagat |
244 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||| ||||| |
|
|
| T |
33372780 |
tatgatataacttgaccccacttattaaaatttttagat |
33372818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 45438508 - 45438700
Alignment:
| Q |
57 |
tgaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataact |
156 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |||||||| | ||||| ||||||||||||||| ||||| | | |||| ||| |||| | |
|
|
| T |
45438508 |
tgaaaaaataattaattatgtttatattttttatactatgctagaaatgaaaaaata-tttttaaaaaatcaatatttttgagtaattataaacataatt |
45438606 |
T |
|
| Q |
157 |
tgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa-tttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
| ||||||||| || ||||| | ||||| ||||| | ||||| ||||||||||||| ||||||||||||| || | |||||| ||| |||| |
|
|
| T |
45438607 |
tatataatttttatacacttacgcgtttatataattttaaataaaattttatgatataactttgacctcacttatttacatttctggatccgtc |
45438700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 33372642 - 33372684
Alignment:
| Q |
3 |
ataaactattcttatatttgttgaaaaaggttgtgactgacgc |
45 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
33372642 |
ataaactattcttatatttgttgaaaaaagttgtgattgacgc |
33372684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8910188 - 8910428
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| || |
|
|
| T |
8910188 |
atataaactattcttatatttgttgaaaaaggttgtgaatgacgctacgttggtggtgaaaaaataatt-attatggttatattttttatactatgcgag |
8910286 |
T |
|
| Q |
101 |
aaatggacaaatattt----tttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaat |
196 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
8910287 |
aaatggacaaatatttaaaaaaaaaaaaattaacattttagggcaattataaatataacttgtataattttcgcacgcttacgtgtttataaaattttat |
8910386 |
T |
|
| Q |
197 |
ataaatttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
|||| |||||||||||||| || ||| ||||| ||||||||| |
|
|
| T |
8910387 |
ataattttttatgatataacttaaccccacttattaaaattt |
8910428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26353876 - 26354111
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||| |||||||| || ||||| || ||| |
|
|
| T |
26353876 |
atataaactatttttatatttgttgaaaaagattgtgactgatgctacgttggtggtgaaaaaataattatttatggttatattgtttatactctgctag |
26353975 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||||||| |||| ||| ||| |||||||||||||||||||||||| |||||| ||| |||| | |
|
|
| T |
26353976 |
aaatagacaaata-tttttaaaaattcaacattttaggataattataaatatgacttgtataattttcgcacgcttatgtgtttataaggttttatat-a |
26354073 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
26354074 |
atttttatgatataatttgacatcatttattaaaattt |
26354111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 30870479 - 30870724
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| | | ||||||||||||||||| |||||||| ||||||||||| ||||| | |||| |
|
|
| T |
30870479 |
atataaattattcttatatttgttgaaaaaggttgtaattgac-ctatgttggtggtgaaaaaatt-ttaattatggttatattttttatactctattag |
30870576 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||| | ||||| ||| |||||| |
|
|
| T |
30870577 |
aaatggacaaatatttta-aacaaatcaacattttagggtaattataaatataactagtataattttcgcacgcttacgcttgtataatgttttatataa |
30870675 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
||||||||||||||| |||||| ||||| | ||||||||| ||| |||| |
|
|
| T |
30870676 |
atttttatgatataacttgaccccacttatcaaaatttctggatccgtc |
30870724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 29454145 - 29453935
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactga-cgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgtta |
99 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
29454145 |
atataaactattcttattttt-ttgaaaaaggttgtgactgaacgctacgttggtggtgaaaaaataattaattatggttatattttttatact---cta |
29454050 |
T |
|
| Q |
100 |
gaaatggacaaat-----attttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaattta |
194 |
Q |
| |
|
||||||||| | | |||||| ||||||| |||||| ||||||| ||| |||||||||||||||||| ||||| |||| || ||||||||||| |
|
|
| T |
29454049 |
gaaatggactattttttattttttttttaaatcaatattttaaggcaattataaatataacttgtataatttttgcacgtttacgcatttataaaatttt |
29453950 |
T |
|
| Q |
195 |
atataaatttttatg |
209 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29453949 |
atataaatttttatg |
29453935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 17353874 - 17353683
Alignment:
| Q |
47 |
acgttggtggtgaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgt |
146 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||| ||||| || ||||||| || |||||| || ||||| |||||||||||| |||||| | |
|
|
| T |
17353874 |
acgttggtggttgaaaaaaaattaattaaggttatattttttatactctgctagaaatagaaaaatatcttacaaaaa-tcaacattttagagcaattat |
17353776 |
T |
|
| Q |
147 |
aagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa-tttgacctcacttgttaaaattt |
238 |
Q |
| |
|
|| ||||| | || |||||| |||||| ||| | ||||| | ||| ||||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
17353775 |
aaacataacctatacaatttttgcacgcatacacgtttatatagttttatataaatttttatgatataactttgaccccacttattaaaattt |
17353683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 19033797 - 19033616
Alignment:
| Q |
57 |
tgaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataact |
156 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||| | | |||||||| |||||||| ||| |||||||||||||| |||||| ||| |||||| |
|
|
| T |
19033797 |
tgaaaaaataattaattatggttctattttttatactcttctggaaatggagaaatatttaaaaaagaatcaacattttagagcaattataaacataact |
19033698 |
T |
|
| Q |
157 |
tgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
| ||||||||| | || |||| ||||| ||||| ||||||||| ||| |||||||||| ||||||||| |||| |||| |
|
|
| T |
19033697 |
tatataatttttgtacacttatgagtttatataattttatataaattcttacgatataattttacctcacttattaacattt |
19033616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 41342113 - 41342246
Alignment:
| Q |
117 |
tttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa- |
215 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||| | ||||||||| ||||||||| | ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
41342113 |
tttaaaaaatcaacattttaaagcaattataaacataacatatataatttttacacgcttacacgtttatatagttttatataaatttttatgatataac |
41342212 |
T |
|
| Q |
216 |
tttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
|||||||||| || ||||| ||| | |||||||| |
|
|
| T |
41342213 |
tttgacctcagttattaaattttttggattcgtc |
41342246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 34213913 - 34213812
Alignment:
| Q |
116 |
ttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa |
215 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||||| |||||||| ||||||||| || ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
34213913 |
ttttaaaaaatcaacattttaaagcaattataaacataactta-ataatttttgcacgcttatgcatttatatagtttgatataaatttttatgatataa |
34213815 |
T |
|
| Q |
216 |
ttt |
218 |
Q |
| |
|
||| |
|
|
| T |
34213814 |
ttt |
34213812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 34214215 - 34214187
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaagg |
32 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34214215 |
taaactattcttatatttgttgaaaaagg |
34214187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2751817 - 2752042
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
2751817 |
atataaattattcttatatttgttgaaaaaggttgtgactgacgctacgttggtggtgaaaaaat-------tatggttatattttttatactatgttaa |
2751909 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||| || | ||| ||||||||||||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
2751910 |
aaatggacaaatatttta-aacatatcaacattttagggtaaatataaatataacttgtataattttcgcacgcttacgcatgtataaaattttatataa |
2752008 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaa |
234 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
2752009 |
atttttatgatataacttgaccccacttattaaa |
2752042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9293568 - 9293328
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||| |
|
|
| T |
9293568 |
atataaaccattcttattttt-ttgaaaaaggttgtgactaacgctacgttggtggtgaaaaa-taattaattatggttatattttttatactctgctag |
9293471 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaa-----tcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaa |
195 |
Q |
| |
|
||| ||| |||||||| |||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||| | ||||||||||| | |
|
|
| T |
9293470 |
aaacggataaatatttaaaaaaaaaaaaaatcaacattttagggcaattataaatatagcttgtataattttcgcacgcttacgcgtttataaaatttta |
9293371 |
T |
|
| Q |
196 |
tataaatttttatgatataatttgacctcacttgttaaaattt |
238 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
9293370 |
tataaatttttatgatataacttgacctcccttattaaaattt |
9293328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 25380912 - 25381141
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatattt-ttaatactatgttagaa |
102 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| || ||||| || ||||| |
|
|
| T |
25380912 |
taaactattattatatttgatgaaaaaggttgtgactgacactaggttggtggtgaaaaaataattaattatggttatatttctttatactctgctagaa |
25381011 |
T |
|
| Q |
103 |
atggacaaata---ttttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatata |
199 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
25381012 |
atggacaaatattttttttttaaaaatcaacattttatggcaattataaatataacttatataattttcgcacgcttacgagtttataaagttttatata |
25381111 |
T |
|
| Q |
200 |
aatttttatgatataa-tttgacctcactt |
228 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| |
|
|
| T |
25381112 |
aatttttataatataactttgaccacactt |
25381141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15075622 - 15075858
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
15075622 |
atataaattattcttatatttgttgaaaaaggttgtaattgacactacgttggtggtgaaaaa--aattaattatggttatattttttatactctgttag |
15075719 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||| |||| ||| ||||||| |||||||||| |||||||||| | ||||| ||| |||||| |
|
|
| T |
15075720 |
aaatggacaaata-ttttaaacaaatcaacattttagggtaattataaatataactagtataatttttgcacgcttacgcgtgtataatgttttatataa |
15075818 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttct |
240 |
Q |
| |
|
||||||||| ||||| |||| | ||||| | ||||||||| |
|
|
| T |
15075819 |
atttttatgttataacttgatcccacttatcaaaatttct |
15075858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4975174 - 4974929
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| | |||| | | |||||||||||||||| |||||||||| ||||||||||| |||| | |||| |
|
|
| T |
4975174 |
atataaattattcttatatttgttgaaaaaagttgtaattgac-ctatgttggtggtgaaaaaa-aattaattatggttatattttttataccctattag |
4975077 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataa |
200 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||| |||| ||| ||||||| |||||||||| |||||||||| | ||||| ||| |||||| |
|
|
| T |
4975076 |
aaatggacaaata-ttttaaacaaatcaacattttaggataattataaatataactggtataatttttgcacgcttacgcgtgtataatgttttatataa |
4974978 |
T |
|
| Q |
201 |
atttttatgatataatttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
||||||||||||||| |||||| ||||| | ||||||||| ||| |||| |
|
|
| T |
4974977 |
atttttatgatataacttgaccccacttatcaaaatttctggatccgtc |
4974929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 25690348 - 25690562
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttata-tttttaatactatgttagaa |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| |||||| ||||| ||||| | ||||| |
|
|
| T |
25690348 |
taaactattattatatttgttgaaaaaggttgtgactaacgctgcgttggtggtcaaaaaataattaattatggttatatttttttatactcggctagaa |
25690447 |
T |
|
| Q |
103 |
atggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaat |
202 |
Q |
| |
|
||| ||||||| ||| |||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||| ||| |||| || |
|
|
| T |
25690448 |
atgcacaaata-tttaaaaaatatcaacattttatggcaattataaatataacttgtataattttcgcacgcttatgagtttataaagttttatattaaa |
25690546 |
T |
|
| Q |
203 |
ttttatgatataattt |
218 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25690547 |
ttttatgatataattt |
25690562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 20990652 - 20990560
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatact |
93 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
20990652 |
atataaaatattattatatttgttgaaaaaggttgtgattgatgctacgttggtggtgaaaaaataattaattatggttatattttttatact |
20990560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 13322652 - 13322811
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaagg--ttgtgactgacgccacgttggtggt-gaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| | ||||| |||||||| |||||||||||||||||| ||||||||||| ||||| || ||| |
|
|
| T |
13322652 |
taaattattcttatatttgttgaaaaaggctttgtcattgacg-----ttggtggttgaaaaaataattaattatggttatattttttatactctgctag |
13322746 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataatttt |
167 |
Q |
| |
|
|||| || ||||| | ||||||||||||||||||||| |||||| ||| |||||| ||||||||| |
|
|
| T |
13322747 |
aaat-gaaaaata-tctttaaaaaatcaacattttagagcaattataaacataactaatataatttt |
13322811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 53834 - 53690
Alignment:
| Q |
3 |
ataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttagaa |
102 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| || ||||| |
|
|
| T |
53834 |
ataaattattctaatatttgttgaaaaaggttgtgactgacgctacgttggtggtgaaaaaataattaattatgattatattttttatactttgctagaa |
53735 |
T |
|
| Q |
103 |
atggacaaatattttttaa---aaaatcaacattttagggcaatt |
144 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
53734 |
atggacaaatattttttaaaaaaaaatcaacattgtagggcaatt |
53690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 53421 - 53331
Alignment:
| Q |
150 |
tataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataatttgacctcacttgttaaaatttct |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
53421 |
tataacttgtataattttcgcacgcttacgcatttataaagttttatataaatttttatgatataacttgacctcacttattaaaatttct |
53331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 22433955 - 22434124
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |||||| ||||| | |||| |
|
|
| T |
22433955 |
atataaattattgttatatttgttgaaaaaggttgtgact-acgctacgttggtggtaaaaaaataattaattatggttacattttttatactctattag |
22434053 |
T |
|
| Q |
101 |
aaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcac |
172 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||| |||| ||| ||||| ||||||| ||||||||| |
|
|
| T |
22434054 |
aaatggacaaata-ttttaaacaaatcaacattttagggtaattataaatataaattgtatagttttcgcac |
22434124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 17028412 - 17028552
Alignment:
| Q |
98 |
tagaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaata |
197 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||| ||| |
|
|
| T |
17028412 |
tagaaattgacaaatattttttaaaaaatcaacattttatggcaattataaatataaattgtataattttcgcacacttacgcgtttataaaattttata |
17028511 |
T |
|
| Q |
198 |
taaatttttatgatataa-tttgacctcacttgttaaaatt |
237 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| |||||||| |
|
|
| T |
17028512 |
taaatttttatgatataactttgatcccacttattaaaatt |
17028552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 9591925 - 9592114
Alignment:
| Q |
49 |
gttggtggt-gaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgta |
147 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||| || |||||||||| ||||||||| ||||| ||||||||||| |||||| || |
|
|
| T |
9591925 |
gttggtggttgaaaaaataattaattatggttatatttttt-tactctgctagaaatggaaaaatatttta-aaaaactcaacattttatagcaattata |
9592022 |
T |
|
| Q |
148 |
agtataacttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa-tttgacctcacttgttaaaattt |
238 |
Q |
| |
|
| |||||||| |||||||| |||||||||| |||| || ||| ||||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
9592023 |
aatataacttacataatttttgcacgcttacatgtttattaagttttatataaatttttatgatataattttgaccccacttattaaaattt |
9592114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 19898285 - 19898514
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaaggt-tgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttagaa |
102 |
Q |
| |
|
|||||||||| ||||||||||||||| | | ||||| ||||||| | |||| |||||||||||||||||| ||||||||||| | ||| | ||| || |
|
|
| T |
19898285 |
taaactattcctatatttgttgaaaaggctatgtgattgacgcc--ggtggt--tgaaaaaataattaattaaggttatattttt-acactctattaaaa |
19898379 |
T |
|
| Q |
103 |
atggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatataaat |
202 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||| || ||| |||||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
19898380 |
atggaaaaata-tttttaaaaaatcaacattttaaagcaattata-----aac----ataatttttgcacgcttacgtgtttatataatttcatataaaa |
19898469 |
T |
|
| Q |
203 |
ttttatgatataatttg-acctcacttgttaaaatttctagattc |
246 |
Q |
| |
|
|||||||||||||| || ||| ||||| ||||||||||| ||||| |
|
|
| T |
19898470 |
ttttatgatataatctgaaccccacttattaaaatttctggattc |
19898514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 56490729 - 56490570
Alignment:
| Q |
59 |
aaaaaataattaattatagttatattttta-atactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaa----ttgtaagtata |
153 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || || ||||||| ||||||||| ||||||||||||||||| |||| || ||| ||| |
|
|
| T |
56490729 |
aaaaaataattaattagtgttatatttttttatactttgctacaaatggaaaaatattttc--aaaaatcaacattttagagcaattatttataaacata |
56490632 |
T |
|
| Q |
154 |
acttgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa |
215 |
Q |
| |
|
|||| ||||||||| |||||||| || ||||| |||| ||||||||||||||||||||| |
|
|
| T |
56490631 |
acttatataatttttacacgcttatgcaattatacaattctatataaatttttatgatataa |
56490570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 33819440 - 33819468
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaagg |
32 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33819440 |
taaactattcttatatttgttgaaaaagg |
33819468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8543964 - 8544081
Alignment:
| Q |
1 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgccacgttggtggtgaaaaaataattaattatagttatatttttaatactatgttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| || ||| |
|
|
| T |
8543964 |
atataaactattcttatatttgttgaaaaaggttgtgactgacgctacgttgatggtgaaaaaataattgattatggttatattttttatactctgctag |
8544063 |
T |
|
| Q |
101 |
aaatggacaaatattttt |
118 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
8544064 |
aaatggacaaatactttt |
8544081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 23428811 - 23428632
Alignment:
| Q |
57 |
tgaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataact |
156 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||| | |||||||||| ||||||||| || |||||||||||||| |||||| ||| |||||| |
|
|
| T |
23428811 |
tgaaaaaataattacttaaggttatattttttatactctactagaaatggaaaaatatttt--aagaaatcaacattttaaagcaattataaacataact |
23428714 |
T |
|
| Q |
157 |
tgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa-tttgacctcacttgttaaaatt |
237 |
Q |
| |
|
| ||||||||| ||| |||||| || ||||| ||||| ||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
23428713 |
tatataatttttgcatgcttacgcatttatataattttatataaatttttatgatataactttgaccccacttattaaaatt |
23428632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 8544097 - 8544154
Alignment:
| Q |
183 |
ttataaaatttaatataaatttttatgatataatttgacctcacttgttaaaatttct |
240 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
8544097 |
ttataaaattttatataaatttttatgatataacttgaccccacttattaaaatttct |
8544154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 292154 - 291973
Alignment:
| Q |
57 |
tgaaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataact |
156 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| || |||||| || |||||| ||||||||||| |||||||||| |||||| ||| ||||| |
|
|
| T |
292154 |
tgaaaaaataattaattatggttatattttttatactctgctagaaacagaaaaatatcttttaaaaaat-aacattttagagcaattataaacataaca |
292056 |
T |
|
| Q |
157 |
tgtataattttcgcacgcttacccacttataaaatttaatataaatttttatgatataa-tttgacctcacttgttaaaattt |
238 |
Q |
| |
|
| ||||||||| ||| |||||| || ||||| | ||| ||||||||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
292055 |
tatataatttttgcatgcttacgcatttatatagttttatataaatttttatgatataactttgaccttacttattaaaattt |
291973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 11083045 - 11082801
Alignment:
| Q |
4 |
taaactattcttatatttgttgaaaaaggtt--gtgactgacgccacgttggtggt-gaaaaaataattaattatagttatattttta-atactatgtta |
99 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||| ||||| ||| |||| |||||| |||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
11083045 |
taaattattcttatatttgttgaaaaaggctatgtgattgacg-----ttgatggttgaaaaattaattaattagggttatatttttttatactctgtta |
11082951 |
T |
|
| Q |
100 |
gaaatggacaaatattttttaaaaaatcaacattttagggcaattgtaagtataacttgtataattttcgcacgcttacccacttataaaatttaatata |
199 |
Q |
| |
|
||||| || |||||| || |||||||||| ||||||| |||||| ||| ||||| | ||||||||| ||||||||| || ||||| ||||| ||||| |
|
|
| T |
11082950 |
gaaatagaaaaatatctta-aaaaaatcaagattttagagcaattataaatataatctatataatttttgcacgcttatgcatttatataattttatata |
11082852 |
T |
|
| Q |
200 |
aatttttatgatat-aatttgacctcacttgttaaaatttctagattcgtc |
249 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||||||||| ||| |||| |
|
|
| T |
11082851 |
aatttttatgatataaattcgacctcacttattaaaatttctggatccgtc |
11082801 |
T |
|
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