View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20505_low_25 (Length: 276)
Name: NF20505_low_25
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 10612789 - 10612534
Alignment:
| Q |
15 |
atataatacacacaagattgctacatatttgtttcttgtgtgtttattgtgacatacttgttcgagcccgatcaacttagggatagggatcagtttactc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612789 |
atataatacacacaagattgctacatatttgtttcttgtatgtttattgtgacatacttgttcgagcccgatcaacttagggatagggatcagtttactc |
10612690 |
T |
|
| Q |
115 |
aagttataaaaatgatgagtaaatggaaatcaagagttaatatgatattttagttaatggacacattaaactagcctaaatctttacaaataagatttag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612689 |
aagttataaaaatgatgagtaaatggaaatcaagagttaatatgatattttagttaatggacacattaaactagcctaaatctttacaaataagatttag |
10612590 |
T |
|
| Q |
215 |
ggtcactctgtgtagtttgagccattcatactttgaacattatcctatagaattat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
10612589 |
ggtcactctgtgtagtttgagccattcatactctgaacattaacctatagagttat |
10612534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University