View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20505_low_30 (Length: 251)
Name: NF20505_low_30
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 30990446 - 30990298
Alignment:
| Q |
1 |
cagaagagggccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaattcattcattgtgcaccactatgtcttctctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30990446 |
cagaagagggccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaattcattcattgtgcaccactatgtcttctctcct |
30990347 |
T |
|
| Q |
101 |
ataaaattcagctttcatgccttcttacttggaaatcttaaaatgctat |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30990346 |
ataaaattcagctttcatgccttcttacttggaaatcttaaaatgctat |
30990298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 43073199 - 43073347
Alignment:
| Q |
1 |
cagaagagggccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaattcattcattgtgcaccactatgtcttctctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43073199 |
cagaagagggccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaattcattcattgtgcaccactatgtcttctctcct |
43073298 |
T |
|
| Q |
101 |
ataaaattcagctttcatgccttcttacttggaaatcttaaaatgctat |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43073299 |
ataaaattcagctttcatgccttcttacttggaaatcttaaaatgctat |
43073347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 44429949 - 44429830
Alignment:
| Q |
70 |
attcattgtgcaccactatgtcttctctcctataaaattcagctttcatgccttcttacttggaaatcttaaaatgctatatgtccttccttctatccac |
169 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44429949 |
attcattgtgcaccactatgtctgctctcctataaaattcagctttcatgccttcttacttggaaatcttaaaatgctatctgtccttccttctatccac |
44429850 |
T |
|
| Q |
170 |
taacttgtttatgtagttct |
189 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44429849 |
taacttgtttatgtagttct |
44429830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 33134818 - 33134883
Alignment:
| Q |
3 |
gaagagggccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaatt |
68 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33134818 |
gaagagggccctagttgttcaacttcgtctacttctattgcatttgaagatgattgaatggtaatt |
33134883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 4457332 - 4457267
Alignment:
| Q |
3 |
gaagagggccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaatt |
68 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4457332 |
gaagagggccgtagttgttcaacttcgtctacttctattgcacttgaagatgattgaatggtaatt |
4457267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 7874269 - 7874212
Alignment:
| Q |
11 |
ccctagttgttcaactacgtctacttctattgcatttgaagatgattgaatggtaatt |
68 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7874269 |
ccctaattgttcaacatcgtctacttctattgcattcgaagatgattgaatggtaatt |
7874212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University