View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_31 (Length: 250)
Name: NF20505_low_31
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31435004 - 31434769
Alignment:
| Q |
1 |
caagaagatttcagttacatgtaggatcactcattgtgatttgtgatccctttattactatactttatttataatattaacataggtaactcgcttaagc |
100 |
Q |
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| T |
31435004 |
caagaagattccagttacatgtaggatcactcattgtgatttgtgatccctttattactatactttatttataacattaacataggtaactcgcttaagc |
31434905 |
T |
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| Q |
101 |
aaatgatctttggttgttgcaatccaagttatcaccaggactcactcccaatatttgacaataccttctataaaacccgatccgatcattaactcgagca |
200 |
Q |
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| T |
31434904 |
aaatgatctttggttgttgcaatccaagttatcaccaggactcactcccaatatttgacaataccttctataaaacccgatccgatcattaactcgagca |
31434805 |
T |
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| Q |
201 |
tcctgtccatgcccgcattcgagcccaccgttgatt |
236 |
Q |
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| T |
31434804 |
tcctgtccatgcccgcattcgagcccaccgttgatt |
31434769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31430869 - 31430643
Alignment:
| Q |
1 |
caagaagatttcagttacatgtaggatcactcattgtgatttgtgatccctttattactatactttat-ttataatattaacataggtaactcgcttaag |
99 |
Q |
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| T |
31430869 |
caagaagattccagttacatataggatcattcattgtgat-------ccctttatta---tactttatattacaacattaacataggtacttcgcttagg |
31430780 |
T |
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| Q |
100 |
caaatgatctttggttgttgcaatccaagttatcaccaggactcactcccaatatttgacaataccttctataaaacccgatccgatcattaactcgagc |
199 |
Q |
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| T |
31430779 |
caaatggcctttggttgttacaatccaagttattgccggggttcactcccaatatttgacaataccttctataaaatccgacccgatcctcgactttagg |
31430680 |
T |
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| Q |
200 |
atcctgtccatgcccgcattcgagcccaccgttgatt |
236 |
Q |
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| T |
31430679 |
atcctgaccgtgcccgcattcgagcccgccgttgatt |
31430643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 31445131 - 31445016
Alignment:
| Q |
69 |
ttataatattaacataggtaactcgcttaagcaaatgatctttggttgttgcaatccaagttatcaccaggactcactcccaatatttgacaataccttc |
168 |
Q |
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|||||| |||||||||||||| | ||||||||||||| ||||| |||| |||||||||||||||||| | | || || ||| | ||||||||| ||| |
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| T |
31445131 |
ttataacattaacataggtaattggcttaagcaaatggcctttgattgtagcaatccaagttatcaccggtagtcgttctcaacaattgacaatatcttt |
31445032 |
T |
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| Q |
169 |
tataaaacccgatccg |
184 |
Q |
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| T |
31445031 |
tataaaacccgatccg |
31445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31445219 - 31445179
Alignment:
| Q |
1 |
caagaagatttcagttacatgtaggatcactcattgtgatt |
41 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
31445219 |
caagaagatttcggttacatgtaggatcattcactgtgatt |
31445179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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