View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_37 (Length: 205)
Name: NF20505_low_37
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 41546869 - 41546958
Alignment:
| Q |
1 |
agatatttgggtcaattaaataacaccctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
90 |
Q |
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| T |
41546869 |
agatattagggtcaattaaataacaccctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
41546958 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 41546576 - 41546532
Alignment:
| Q |
161 |
gttaaggatgtcaagaaagctaaagtcaggtctagtcatgttaag |
205 |
Q |
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| T |
41546576 |
gttaaggatgtcaagaaagctaaagtcaggtctagtcatgttaag |
41546532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 41546537 - 41546493
Alignment:
| Q |
161 |
gttaaggatgtcaagaaagctaaagtcaggtctagtcatgttaag |
205 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41546537 |
gttaaggatgtcaagaaagccaaagtcaggtctagtcatgttaag |
41546493 |
T |
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