View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_4 (Length: 462)
Name: NF20505_low_4
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 76 - 263
Target Start/End: Original strand, 41546771 - 41546958
Alignment:
| Q |
76 |
aattggtgcaggtacttcgacatgaccaactggtgcagaacaatgcagtttttgagataacatttcaagcacatcatcttcaaacataatatcagctaag |
175 |
Q |
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| T |
41546771 |
aattggtgcaggtacttcgacatgaccaactggtgcagaacaatgcagtttttgagataacatttcaagcacatcatcttcaaacataatatcagctaag |
41546870 |
T |
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| Q |
176 |
atatttgggtcaattaaataacaccctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
263 |
Q |
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| T |
41546871 |
atattagggtcaattaaataacaccctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
41546958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 365 - 428
Target Start/End: Original strand, 41547060 - 41547123
Alignment:
| Q |
365 |
caatatagtgtaaagaaattatagggaccacttactaatttaaccttggagtatatatgatttc |
428 |
Q |
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| T |
41547060 |
caatatagtgtaaagaaattatagggaccacttactaatttaaccttggagtatatatgatttc |
41547123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41546720 - 41546672
Alignment:
| Q |
1 |
aataccttatgtgcctgatcctacaaatgtaagtatttaagcatttgcc |
49 |
Q |
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| T |
41546720 |
aataccttatgtgcctgatcctacaaatgtaagtatttaagcatttgcc |
41546672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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