View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_5 (Length: 462)
Name: NF20505_low_5
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 41546696 - 41546958
Alignment:
| Q |
1 |
tgtaggatcaggcacataaggtattgcaactggtgcatttgcaacaggatcaacctgacttgcagaaggtgctacaattggtgcaggtacttcgacatga |
100 |
Q |
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| T |
41546696 |
tgtaggatcaggcacataaggtattgcaactggtgcatttgcaacaggatcaacctgacttgcagaaggtgctacaattggtgcaggtacttcgacatga |
41546795 |
T |
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| Q |
101 |
ccaactggtgcagaacaatgcagtttttgagataacatttcaagcacatcatcttcaaacataatatcagctaagatatttgggtcaattaaataacacc |
200 |
Q |
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| T |
41546796 |
ccaactggtgcagaacaatgcagtttttgagataacatttcaagcacatcatcttcaaacataatatcagctaagatattagggtcaattaaataacacc |
41546895 |
T |
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| Q |
201 |
ctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
263 |
Q |
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| T |
41546896 |
ctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
41546958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 365 - 428
Target Start/End: Original strand, 41547060 - 41547123
Alignment:
| Q |
365 |
caatatagtgtaaagaaattatagggaccacttactaatttaaccttggagtatatatgatttc |
428 |
Q |
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| T |
41547060 |
caatatagtgtaaagaaattatagggaccacttactaatttaaccttggagtatatatgatttc |
41547123 |
T |
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