View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_6 (Length: 462)
Name: NF20505_low_6
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_6 |
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| [»] scaffold0181 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: scaffold0181 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 11114 - 11538
Alignment:
| Q |
13 |
aaaatatcaagtatatccctatcatgagcaccttcaccctttacctttcttttctcttgatgttcccttatagccctctccaacattatgtcaaaccttt |
112 |
Q |
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| T |
11114 |
aaaatatcaagtatatccctatcatgagcaccttcaccctttacctttcttttctcttgatgttcccttatggccctctccaacattatgtcaaaccttt |
11213 |
T |
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| Q |
113 |
ccatagcaactttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaagctctaaaat |
212 |
Q |
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| T |
11214 |
ccatagcaactttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaagctctaaaat |
11313 |
T |
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| Q |
213 |
gtctttcaacatctccctaatttcttcaacttcactatcattttcagaacatgttttacttattgccatccttgctataatgttattggtgagagttaag |
312 |
Q |
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| T |
11314 |
gtccttcagcatctccctaatttcttcaacttcactatcattttcagaacatgttttacttattgccattcttgctataatgttattggtgagagttaag |
11413 |
T |
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| Q |
313 |
agctcgccgccgacatcaacggcgttgccagcttctcctttcttctgcaaaagttttaagaatctcaatgactcttgttgcatcaagggaaggaattgat |
412 |
Q |
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| T |
11414 |
agctcgccgccgacatcaacggcgttgccagcttctcctatcttctgcaaaagttttaagaatctcaatgactcttgttgcatcaatggaaggaattgat |
11513 |
T |
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| Q |
413 |
caagtgttcttttaccaagaagctc |
437 |
Q |
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| T |
11514 |
caagtgttcttttaccaagaagctc |
11538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 19199 - 18837
Alignment:
| Q |
13 |
aaaatatcaagtatatccctatcatgagcaccttcaccctttacctttcttttct---------cttgatgttcccttatagccctctccaacattatgt |
103 |
Q |
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| T |
19199 |
aaaatatcaagtagatccctaacatgatcaccttcacccttttctttccttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgt |
19100 |
T |
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| Q |
104 |
caaacctttccatagcaactttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaag |
203 |
Q |
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| T |
19099 |
caaacctctccataaccactttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaag |
19000 |
T |
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| Q |
204 |
ctctaaaatgtctttcaacatctccctaatttcttcaacttcactatcattttcagaacatgttttacttattgccatccttgctataatgttattggtg |
303 |
Q |
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| T |
18999 |
ctctacactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccatagttgtgatgattctattcgtg |
18900 |
T |
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| Q |
304 |
agagttaagagctcgccgccgacatcaacggcgttgccagcttctcctttcttctgcaaaagt |
366 |
Q |
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| T |
18899 |
agattcaagagctcgccgccaacattaacagcctcgcgagcttccccttttgtctgcaaaagt |
18837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 437
Target Start/End: Complemental strand, 24940044 - 24939724
Alignment:
| Q |
123 |
tttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaagctctaaaatgtctttcaac |
222 |
Q |
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| T |
24940044 |
tttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccgacacattaaacttccctgcaagctcggcagtgtctgtcacc |
24939945 |
T |
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| Q |
223 |
atctccctaatttcttcaacttcac---tatcattttcagaac---atgttttacttattgccatccttgctataatgttattggtgagagttaagagct |
316 |
Q |
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| T |
24939944 |
atcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggatagagtcaacagct |
24939845 |
T |
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| Q |
317 |
cgccgccgacatcaacggcgttgccagcttctcctttcttctgcaaaagttttaagaatctcaatgactcttgttgcatcaagggaaggaattgatcaag |
416 |
Q |
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| T |
24939844 |
cgccgccaatatcaacggcttcaccggcttcccctttcttatccaaaagtctaagaaatcttagagtctcttgttgcctcaagggacgaagttgatcgag |
24939745 |
T |
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| Q |
417 |
tgttcttttaccaagaagctc |
437 |
Q |
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| T |
24939744 |
ggttcttccaccaagaagctc |
24939724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 38808845 - 38808930
Alignment:
| Q |
235 |
tcttcaacttcactatcattttcagaacatgttttacttattgccatccttgctataatgttattggtgagagttaagagctcgcc |
320 |
Q |
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| T |
38808845 |
tcttcaacatcaccatcattttcacaacaagttttactcattgtcatccttgttatgattctattggtgtgaatcaagagctcgcc |
38808930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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